Wall clock time and date at job start Tue Mar 31 2020 10:34:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42899 * 113.99502 * 2 1 4 4 C 1.53000 * 109.46742 * 179.97438 * 3 2 1 5 5 O 1.42900 * 109.47165 * 65.00097 * 4 3 2 6 6 C 1.42900 * 114.00052 * 179.97438 * 5 4 3 7 7 C 1.50701 * 109.47050 * 179.97438 * 6 5 4 8 8 O 1.21282 * 119.99989 * 0.02562 * 7 6 5 9 9 N 1.34781 * 119.99876 * 179.97438 * 7 6 5 10 10 C 1.46496 * 120.00228 * 359.97438 * 9 7 6 11 11 C 1.46499 * 119.99717 * 180.02562 * 9 7 6 12 12 C 1.52997 * 109.47226 * 59.19244 * 11 9 7 13 13 C 1.53001 * 109.47520 * 59.99854 * 12 11 9 14 14 C 1.53004 * 109.47085 * 59.99803 * 13 12 11 15 15 N 1.46494 * 109.47031 * 180.02562 * 14 13 12 16 16 C 1.36941 * 119.99762 * 205.00232 * 15 14 13 17 17 H 1.07999 * 120.00045 * 359.97438 * 16 15 14 18 18 C 1.38815 * 120.00184 * 179.97438 * 16 15 14 19 19 N 1.31621 * 119.99791 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00228 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46877 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.46817 * 120.00120 * 20 18 16 23 23 H 1.48492 * 109.47579 * 240.00263 * 20 18 16 24 24 C 1.52997 * 109.47103 * 300.00453 * 14 13 12 25 25 C 1.53001 * 109.47520 * 59.99813 * 24 14 13 26 26 H 1.09005 * 109.46993 * 60.00062 * 1 2 3 27 27 H 1.09001 * 109.46775 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47015 * 299.99965 * 1 2 3 29 29 H 1.08996 * 109.47751 * 60.00144 * 3 2 1 30 30 H 1.09001 * 109.47481 * 299.99391 * 3 2 1 31 31 H 1.08998 * 109.47530 * 305.00021 * 4 3 2 32 32 H 1.09006 * 109.47396 * 184.99798 * 4 3 2 33 33 H 1.08999 * 109.47038 * 59.99880 * 6 5 4 34 34 H 1.09000 * 109.47323 * 299.99506 * 6 5 4 35 35 H 1.09004 * 109.47130 * 275.92122 * 10 9 7 36 36 H 1.09000 * 109.46560 * 35.91748 * 10 9 7 37 37 H 1.08991 * 109.47463 * 155.91714 * 10 9 7 38 38 H 1.08996 * 109.47637 * 299.19030 * 11 9 7 39 39 H 1.08995 * 109.47128 * 299.99887 * 12 11 9 40 40 H 1.09004 * 109.47508 * 179.97438 * 12 11 9 41 41 H 1.09004 * 109.47010 * 300.00646 * 13 12 11 42 42 H 1.08994 * 109.47547 * 179.97438 * 13 12 11 43 43 H 1.08994 * 109.46773 * 60.00038 * 14 13 12 44 44 H 0.96995 * 120.00452 * 24.99297 * 15 14 13 45 45 H 0.96999 * 119.99824 * 179.97438 * 19 18 16 46 46 H 1.09000 * 109.47559 * 179.97438 * 24 14 13 47 47 H 1.09004 * 109.47508 * 300.00028 * 24 14 13 48 48 H 1.09004 * 109.47010 * 59.99354 * 25 24 14 49 49 H 1.08994 * 109.47547 * 180.02562 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 8 3.9658 0.5793 -1.2201 6 6 5.3822 0.4198 -1.3220 7 6 5.7215 -0.2251 -2.6411 8 8 4.8374 -0.5188 -3.4177 9 7 7.0075 -0.4746 -2.9583 10 6 8.0755 -0.1183 -2.0210 11 6 7.3373 -1.1011 -4.2408 12 6 6.8221 -0.2244 -5.3841 13 6 7.4802 1.1546 -5.3059 14 6 8.9981 1.0027 -5.4238 15 7 9.6283 2.3230 -5.3484 16 6 10.8561 2.5292 -5.9186 17 1 11.3600 1.7184 -6.4236 18 6 11.4531 3.7805 -5.8476 19 7 10.8392 4.7685 -5.2318 20 14 13.1282 4.0616 -6.6249 21 1 13.6015 2.8006 -7.2505 22 1 13.0213 5.1187 -7.6625 23 1 14.0932 4.4890 -5.5804 24 6 9.5133 0.1261 -4.2806 25 6 8.8552 -1.2529 -4.3588 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.6886 1.8464 0.8899 30 1 1.6886 1.8464 -0.8900 31 1 3.8508 0.5686 0.8427 32 1 3.9784 2.1766 0.0902 33 1 5.7362 -0.2119 -0.5074 34 1 5.8632 1.3960 -1.2602 35 1 8.3404 0.9307 -2.1537 36 1 7.7310 -0.2796 -0.9995 37 1 8.9494 -0.7408 -2.2123 38 1 6.8684 -2.0834 -4.2967 39 1 5.7408 -0.1162 -5.3000 40 1 7.0678 -0.6903 -6.3384 41 1 7.2349 1.6207 -4.3515 42 1 7.1135 1.7789 -6.1206 43 1 9.2435 0.5366 -6.3780 44 1 9.1758 3.0512 -4.8946 45 1 11.2565 5.6427 -5.1818 46 1 10.5946 0.0175 -4.3648 47 1 9.2679 0.5921 -3.3263 48 1 9.1005 -1.7190 -5.3131 49 1 9.2218 -1.8773 -3.5441 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755272765.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:34:49 Heat of formation + Delta-G solvation = -96.231735 kcal Electronic energy + Delta-G solvation = -27474.546889 eV Core-core repulsion = 23631.175469 eV Total energy + Delta-G solvation = -3843.371420 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.204 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.53031 -38.72459 -37.91593 -36.91922 -35.03600 -33.29199 -31.25361 -30.77196 -30.60462 -28.42181 -27.44356 -26.44666 -25.91456 -23.59256 -22.81466 -22.14974 -21.32717 -19.89977 -18.68345 -17.40182 -17.10681 -16.96744 -16.78778 -16.19330 -15.87639 -15.53593 -15.29192 -15.05412 -14.90972 -14.16881 -13.94694 -13.77383 -13.50209 -13.23378 -12.97939 -12.78960 -12.54343 -12.42394 -12.25819 -12.07145 -11.86594 -11.67437 -11.62278 -11.47770 -11.32073 -11.00248 -10.88755 -10.57064 -10.32771 -10.10855 -10.04899 -9.96782 -9.86765 -9.72193 -9.56594 -9.17900 -8.87124 -8.45739 -6.92856 -5.75795 -3.03665 2.68130 2.75239 3.42555 3.48522 3.49481 3.50515 3.70752 4.50401 4.59387 4.73130 4.86937 4.91331 4.99698 5.06685 5.07488 5.08770 5.09871 5.12195 5.16394 5.21723 5.28589 5.41520 5.44119 5.47568 5.55604 5.63793 5.69261 5.77030 5.85253 5.94973 6.04426 6.09227 6.10801 6.38107 6.50794 6.53183 6.62385 6.71275 6.78363 6.85098 6.94892 7.03608 7.18403 7.47630 7.71608 8.29990 8.43390 9.54224 10.13957 10.48464 11.47118 Molecular weight = 314.20amu Principal moments of inertia in cm(-1) A = 0.019994 B = 0.002709 C = 0.002541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.084110 B =10332.434429 C =11015.065960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.383 6.383 3 C 0.064 3.936 4 C 0.061 3.939 5 O -0.355 6.355 6 C 0.045 3.955 7 C 0.516 3.484 8 O -0.518 6.518 9 N -0.601 5.601 10 C 0.064 3.936 11 C 0.156 3.844 12 C -0.133 4.133 13 C -0.116 4.116 14 C 0.180 3.820 15 N -0.725 5.725 16 C -0.233 4.233 17 H 0.070 0.930 18 C -0.016 4.016 19 N -0.934 5.934 20 Si 0.904 3.096 21 H -0.281 1.281 22 H -0.292 1.292 23 H -0.292 1.292 24 C -0.161 4.161 25 C -0.125 4.125 26 H 0.042 0.958 27 H 0.085 0.915 28 H 0.039 0.961 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.068 0.932 33 H 0.077 0.923 34 H 0.080 0.920 35 H 0.071 0.929 36 H 0.059 0.941 37 H 0.090 0.910 38 H 0.069 0.931 39 H 0.080 0.920 40 H 0.067 0.933 41 H 0.053 0.947 42 H 0.059 0.941 43 H 0.043 0.957 44 H 0.382 0.618 45 H 0.253 0.747 46 H 0.061 0.939 47 H 0.079 0.921 48 H 0.075 0.925 49 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.235 -10.636 13.118 22.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.302 6.302 3 C -0.013 4.013 4 C -0.016 4.016 5 O -0.273 6.273 6 C -0.035 4.035 7 C 0.302 3.698 8 O -0.393 6.393 9 N -0.337 5.337 10 C -0.078 4.078 11 C 0.054 3.946 12 C -0.172 4.172 13 C -0.155 4.155 14 C 0.070 3.930 15 N -0.365 5.365 16 C -0.365 4.365 17 H 0.088 0.912 18 C -0.212 4.212 19 N -0.583 5.583 20 Si 0.736 3.264 21 H -0.206 1.206 22 H -0.220 1.220 23 H -0.220 1.220 24 C -0.200 4.200 25 C -0.163 4.163 26 H 0.061 0.939 27 H 0.104 0.896 28 H 0.057 0.943 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.086 0.914 33 H 0.095 0.905 34 H 0.098 0.902 35 H 0.090 0.910 36 H 0.077 0.923 37 H 0.108 0.892 38 H 0.087 0.913 39 H 0.098 0.902 40 H 0.086 0.914 41 H 0.072 0.928 42 H 0.078 0.922 43 H 0.061 0.939 44 H 0.215 0.785 45 H 0.063 0.937 46 H 0.080 0.920 47 H 0.097 0.903 48 H 0.094 0.906 49 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -14.558 -11.020 12.440 22.094 hybrid contribution 0.977 0.907 0.056 1.334 sum -13.581 -10.113 12.495 21.044 Atomic orbital electron populations 1.22741 0.81109 1.02840 0.99829 1.87974 1.19574 1.27264 1.95364 1.22545 0.92189 0.85581 1.01000 1.22589 0.93657 0.97723 0.87587 1.88074 1.19637 1.81971 1.37641 1.22277 0.83905 1.00920 0.96421 1.20066 0.82382 0.79346 0.87981 1.90681 1.46640 1.51132 1.50891 1.47794 1.05436 1.61582 1.18893 1.22276 0.91879 1.02066 0.91592 1.21036 0.95761 0.95480 0.82306 1.21925 1.01814 0.96227 0.97222 1.21695 0.96486 0.95842 1.01434 1.20194 0.90020 0.87434 0.95375 1.42445 1.20261 1.06872 1.66963 1.19291 0.94431 0.95188 1.27540 0.91239 1.24732 0.98830 0.96104 1.01528 1.69672 1.38636 1.01784 1.48201 0.86150 0.84144 0.77602 0.78511 1.20618 1.21959 1.21972 1.22867 1.00344 0.93906 1.02926 1.21871 0.93107 0.99270 1.02057 0.93928 0.89617 0.94281 0.91726 0.92125 0.92310 0.91409 0.90513 0.90181 0.91043 0.92291 0.89185 0.91292 0.90157 0.91418 0.92791 0.92244 0.93939 0.78464 0.93663 0.92041 0.90324 0.90646 0.92095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 101.05 1.11 1.36 16 2 O -0.38 -4.40 10.67 -40.09 -0.43 -4.83 16 3 C 0.06 0.58 6.32 37.16 0.23 0.82 16 4 C 0.06 0.58 6.32 37.16 0.23 0.82 16 5 O -0.36 -4.87 9.84 -59.73 -0.59 -5.45 16 6 C 0.04 0.52 5.05 36.01 0.18 0.70 16 7 C 0.52 7.66 7.46 -10.98 -0.08 7.57 16 8 O -0.52 -9.71 14.55 -14.35 -0.21 -9.92 16 9 N -0.60 -7.92 2.25 -173.94 -0.39 -8.32 16 10 C 0.06 0.68 8.00 59.84 0.48 1.16 16 11 C 0.16 2.15 2.95 -67.93 -0.20 1.95 16 12 C -0.13 -2.07 5.23 -26.73 -0.14 -2.21 16 13 C -0.12 -2.07 5.23 -26.73 -0.14 -2.21 16 14 C 0.18 3.52 2.77 -67.93 -0.19 3.33 16 15 N -0.73 -17.94 5.12 -53.43 -0.27 -18.21 16 16 C -0.23 -6.39 9.93 -15.06 -0.15 -6.54 16 17 H 0.07 1.87 7.83 -52.49 -0.41 1.45 16 18 C -0.02 -0.47 5.50 -17.43 -0.10 -0.56 16 19 N -0.93 -28.04 13.06 55.49 0.72 -27.32 16 20 Si 0.90 22.30 29.55 -169.99 -5.02 17.27 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 22 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 23 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 24 C -0.16 -2.63 4.84 -26.73 -0.13 -2.75 16 25 C -0.12 -1.62 4.91 -26.73 -0.13 -1.75 16 26 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.08 0.69 7.42 -51.93 -0.39 0.31 16 34 H 0.08 0.80 8.11 -51.93 -0.42 0.38 16 35 H 0.07 0.85 6.70 -51.93 -0.35 0.50 16 36 H 0.06 0.46 6.69 -51.93 -0.35 0.12 16 37 H 0.09 0.91 4.95 -51.93 -0.26 0.66 16 38 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 39 H 0.08 1.38 6.11 -51.93 -0.32 1.06 16 40 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.05 0.98 7.60 -51.93 -0.39 0.59 16 42 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 43 H 0.04 0.87 8.08 -51.93 -0.42 0.45 16 44 H 0.38 10.13 7.80 -40.82 -0.32 9.81 16 45 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 46 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 47 H 0.08 1.24 3.66 -51.93 -0.19 1.05 16 48 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 49 H 0.06 0.68 6.89 -51.93 -0.36 0.32 16 LS Contribution 379.72 15.07 5.72 5.72 Total: -1.00 -34.67 379.72 -7.85 -42.53 By element: Atomic # 1 Polarization: 15.21 SS G_CDS: -8.38 Total: 6.84 kcal Atomic # 6 Polarization: 0.70 SS G_CDS: 0.99 Total: 1.69 kcal Atomic # 7 Polarization: -53.91 SS G_CDS: 0.06 Total: -53.85 kcal Atomic # 8 Polarization: -18.98 SS G_CDS: -1.22 Total: -20.21 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.67 -7.85 -42.53 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755272765.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.703 kcal (2) G-P(sol) polarization free energy of solvation -34.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds