Wall clock time and date at job start Tue Mar 31 2020 10:34:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42899 * 113.99502 * 2 1 4 4 C 1.53000 * 109.46742 * 179.97438 * 3 2 1 5 5 O 1.42900 * 109.47165 * 65.00097 * 4 3 2 6 6 C 1.42900 * 114.00052 * 179.97438 * 5 4 3 7 7 C 1.50701 * 109.47050 * 179.97438 * 6 5 4 8 8 O 1.21282 * 119.99989 * 0.02562 * 7 6 5 9 9 N 1.34781 * 119.99876 * 179.97438 * 7 6 5 10 10 C 1.46496 * 120.00228 * 359.97438 * 9 7 6 11 11 C 1.46499 * 119.99717 * 180.02562 * 9 7 6 12 12 C 1.52997 * 109.47226 * 59.19244 * 11 9 7 13 13 C 1.53001 * 109.47520 * 59.99854 * 12 11 9 14 14 C 1.53004 * 109.47085 * 59.99803 * 13 12 11 15 15 N 1.46494 * 109.47031 * 180.02562 * 14 13 12 16 16 C 1.36941 * 119.99762 * 205.00232 * 15 14 13 17 17 H 1.07999 * 120.00045 * 359.97438 * 16 15 14 18 18 C 1.38815 * 120.00184 * 179.97438 * 16 15 14 19 19 N 1.31621 * 119.99791 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00228 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46877 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.46817 * 120.00120 * 20 18 16 23 23 H 1.48492 * 109.47579 * 240.00263 * 20 18 16 24 24 C 1.52997 * 109.47103 * 300.00453 * 14 13 12 25 25 C 1.53001 * 109.47520 * 59.99813 * 24 14 13 26 26 H 1.09005 * 109.46993 * 60.00062 * 1 2 3 27 27 H 1.09001 * 109.46775 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47015 * 299.99965 * 1 2 3 29 29 H 1.08996 * 109.47751 * 60.00144 * 3 2 1 30 30 H 1.09001 * 109.47481 * 299.99391 * 3 2 1 31 31 H 1.08998 * 109.47530 * 305.00021 * 4 3 2 32 32 H 1.09006 * 109.47396 * 184.99798 * 4 3 2 33 33 H 1.08999 * 109.47038 * 59.99880 * 6 5 4 34 34 H 1.09000 * 109.47323 * 299.99506 * 6 5 4 35 35 H 1.09004 * 109.47130 * 275.92122 * 10 9 7 36 36 H 1.09000 * 109.46560 * 35.91748 * 10 9 7 37 37 H 1.08991 * 109.47463 * 155.91714 * 10 9 7 38 38 H 1.08996 * 109.47637 * 299.19030 * 11 9 7 39 39 H 1.08995 * 109.47128 * 299.99887 * 12 11 9 40 40 H 1.09004 * 109.47508 * 179.97438 * 12 11 9 41 41 H 1.09004 * 109.47010 * 300.00646 * 13 12 11 42 42 H 1.08994 * 109.47547 * 179.97438 * 13 12 11 43 43 H 1.08994 * 109.46773 * 60.00038 * 14 13 12 44 44 H 0.96995 * 120.00452 * 24.99297 * 15 14 13 45 45 H 0.96999 * 119.99824 * 179.97438 * 19 18 16 46 46 H 1.09000 * 109.47559 * 179.97438 * 24 14 13 47 47 H 1.09004 * 109.47508 * 300.00028 * 24 14 13 48 48 H 1.09004 * 109.47010 * 59.99354 * 25 24 14 49 49 H 1.08994 * 109.47547 * 180.02562 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 8 3.9658 0.5793 -1.2201 6 6 5.3822 0.4198 -1.3220 7 6 5.7215 -0.2251 -2.6411 8 8 4.8374 -0.5188 -3.4177 9 7 7.0075 -0.4746 -2.9583 10 6 8.0755 -0.1183 -2.0210 11 6 7.3373 -1.1011 -4.2408 12 6 6.8221 -0.2244 -5.3841 13 6 7.4802 1.1546 -5.3059 14 6 8.9981 1.0027 -5.4238 15 7 9.6283 2.3230 -5.3484 16 6 10.8561 2.5292 -5.9186 17 1 11.3600 1.7184 -6.4236 18 6 11.4531 3.7805 -5.8476 19 7 10.8392 4.7685 -5.2318 20 14 13.1282 4.0616 -6.6249 21 1 13.6015 2.8006 -7.2505 22 1 13.0213 5.1187 -7.6625 23 1 14.0932 4.4890 -5.5804 24 6 9.5133 0.1261 -4.2806 25 6 8.8552 -1.2529 -4.3588 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.6886 1.8464 0.8899 30 1 1.6886 1.8464 -0.8900 31 1 3.8508 0.5686 0.8427 32 1 3.9784 2.1766 0.0902 33 1 5.7362 -0.2119 -0.5074 34 1 5.8632 1.3960 -1.2602 35 1 8.3404 0.9307 -2.1537 36 1 7.7310 -0.2796 -0.9995 37 1 8.9494 -0.7408 -2.2123 38 1 6.8684 -2.0834 -4.2967 39 1 5.7408 -0.1162 -5.3000 40 1 7.0678 -0.6903 -6.3384 41 1 7.2349 1.6207 -4.3515 42 1 7.1135 1.7789 -6.1206 43 1 9.2435 0.5366 -6.3780 44 1 9.1758 3.0512 -4.8946 45 1 11.2565 5.6427 -5.1818 46 1 10.5946 0.0175 -4.3648 47 1 9.2679 0.5921 -3.3263 48 1 9.1005 -1.7190 -5.3131 49 1 9.2218 -1.8773 -3.5441 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755272765.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:34:48 Heat of formation + Delta-G solvation = -119.635003 kcal Electronic energy + Delta-G solvation = -27475.561731 eV Core-core repulsion = 23631.175469 eV Total energy + Delta-G solvation = -3844.386262 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.204 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.67258 -39.66569 -38.94326 -37.87374 -36.54851 -34.88024 -32.88299 -31.99481 -31.53851 -29.90872 -28.39020 -27.22500 -27.02316 -25.45290 -23.54104 -23.48130 -22.63107 -21.26490 -19.88751 -19.04148 -18.21604 -17.85602 -17.75342 -17.14984 -17.00825 -16.76745 -16.30880 -16.08879 -15.95159 -15.64092 -15.37081 -15.01013 -14.83465 -14.76590 -14.13477 -13.82649 -13.67545 -13.38045 -13.36420 -13.16749 -13.00998 -12.94154 -12.84073 -12.75283 -12.61721 -12.33283 -12.08337 -12.02440 -12.01870 -11.89504 -11.57940 -11.26778 -11.06853 -10.82265 -10.70560 -10.62798 -10.41833 -9.56019 -8.95745 -7.91813 -5.19313 1.47601 1.48536 1.58074 1.60659 1.78745 2.57551 2.85310 2.88809 3.41408 3.55144 3.76887 3.90261 3.92337 4.08155 4.16020 4.20950 4.27519 4.28681 4.31196 4.33915 4.45106 4.46722 4.47373 4.56863 4.58902 4.61182 4.63045 4.67163 4.74057 4.76856 4.83319 4.85447 4.91906 5.06864 5.16236 5.19506 5.26941 5.31293 5.50944 5.58414 5.60757 5.78149 6.05664 6.25646 6.30983 6.45386 7.21584 7.36394 8.13756 8.37013 9.32090 Molecular weight = 314.20amu Principal moments of inertia in cm(-1) A = 0.019994 B = 0.002709 C = 0.002541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.084110 B =10332.434429 C =11015.065960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.416 6.416 3 C 0.058 3.942 4 C 0.055 3.945 5 O -0.394 6.394 6 C 0.047 3.953 7 C 0.506 3.494 8 O -0.567 6.567 9 N -0.599 5.599 10 C 0.059 3.941 11 C 0.156 3.844 12 C -0.126 4.126 13 C -0.103 4.103 14 C 0.176 3.824 15 N -0.737 5.737 16 C -0.230 4.230 17 H 0.074 0.926 18 C -0.079 4.079 19 N -0.971 5.971 20 Si 0.969 3.031 21 H -0.267 1.267 22 H -0.298 1.298 23 H -0.293 1.293 24 C -0.151 4.151 25 C -0.112 4.112 26 H 0.041 0.959 27 H 0.091 0.909 28 H 0.060 0.940 29 H 0.096 0.904 30 H 0.049 0.951 31 H 0.072 0.928 32 H 0.090 0.910 33 H 0.109 0.891 34 H 0.097 0.903 35 H 0.058 0.942 36 H 0.094 0.906 37 H 0.100 0.900 38 H 0.078 0.922 39 H 0.062 0.938 40 H 0.077 0.923 41 H 0.047 0.953 42 H 0.038 0.962 43 H 0.033 0.967 44 H 0.370 0.630 45 H 0.249 0.751 46 H 0.047 0.953 47 H 0.087 0.913 48 H 0.083 0.917 49 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.500 -12.052 14.676 23.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.336 6.336 3 C -0.018 4.018 4 C -0.021 4.021 5 O -0.313 6.313 6 C -0.032 4.032 7 C 0.295 3.705 8 O -0.446 6.446 9 N -0.333 5.333 10 C -0.082 4.082 11 C 0.054 3.946 12 C -0.165 4.165 13 C -0.142 4.142 14 C 0.068 3.932 15 N -0.377 5.377 16 C -0.362 4.362 17 H 0.092 0.908 18 C -0.271 4.271 19 N -0.622 5.622 20 Si 0.799 3.201 21 H -0.191 1.191 22 H -0.226 1.226 23 H -0.220 1.220 24 C -0.191 4.191 25 C -0.150 4.150 26 H 0.060 0.940 27 H 0.109 0.891 28 H 0.078 0.922 29 H 0.113 0.887 30 H 0.068 0.932 31 H 0.090 0.910 32 H 0.108 0.892 33 H 0.126 0.874 34 H 0.115 0.885 35 H 0.076 0.924 36 H 0.112 0.888 37 H 0.118 0.882 38 H 0.096 0.904 39 H 0.081 0.919 40 H 0.096 0.904 41 H 0.065 0.935 42 H 0.056 0.944 43 H 0.051 0.949 44 H 0.201 0.799 45 H 0.058 0.942 46 H 0.066 0.934 47 H 0.105 0.895 48 H 0.102 0.898 49 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -13.807 -12.486 14.010 23.299 hybrid contribution 0.663 1.326 -0.434 1.545 sum -13.144 -11.161 13.576 21.946 Atomic orbital electron populations 1.22900 0.79696 1.03619 1.00800 1.87919 1.21359 1.28732 1.95592 1.22732 0.92185 0.84999 1.01921 1.22859 0.93888 0.98882 0.86489 1.88031 1.20678 1.82725 1.39843 1.22367 0.83550 1.02026 0.95300 1.20753 0.82258 0.78760 0.88775 1.90655 1.48086 1.53315 1.52583 1.47879 1.05705 1.60784 1.18910 1.22431 0.91586 1.01343 0.92880 1.21016 0.96242 0.95370 0.82013 1.21837 1.00483 0.95192 0.98947 1.21531 0.95447 0.97018 1.00179 1.20412 0.90710 0.85767 0.96338 1.42644 1.19768 1.08506 1.66752 1.19627 0.95075 0.95131 1.26361 0.90798 1.25508 1.02471 0.96132 1.02952 1.69823 1.40228 1.01998 1.50182 0.85128 0.80046 0.77609 0.77337 1.19092 1.22555 1.22008 1.22694 0.99476 0.95319 1.01562 1.21785 0.91902 0.97376 1.03904 0.94028 0.89055 0.92188 0.88657 0.93230 0.91007 0.89229 0.87378 0.88521 0.92387 0.88806 0.88203 0.90423 0.91886 0.90405 0.93468 0.94352 0.94915 0.79906 0.94209 0.93445 0.89511 0.89818 0.88928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 113.37 1.25 1.63 16 2 O -0.42 -9.33 10.67 -144.34 -1.54 -10.87 16 3 C 0.06 1.00 6.32 71.98 0.45 1.45 16 4 C 0.05 0.95 6.32 71.98 0.45 1.40 16 5 O -0.39 -10.47 9.84 -125.55 -1.24 -11.71 16 6 C 0.05 1.00 5.05 71.24 0.36 1.36 16 7 C 0.51 14.54 7.46 87.66 0.65 15.19 16 8 O -0.57 -21.51 14.55 16.00 0.23 -21.28 16 9 N -0.60 -14.62 2.25 -822.61 -1.85 -16.47 16 10 C 0.06 1.07 8.00 127.77 1.02 2.10 16 11 C 0.16 4.01 2.95 44.99 0.13 4.14 16 12 C -0.13 -3.87 5.23 30.59 0.16 -3.71 16 13 C -0.10 -3.72 5.23 30.60 0.16 -3.56 16 14 C 0.18 6.85 2.77 44.99 0.12 6.97 16 15 N -0.74 -36.89 5.12 -322.95 -1.65 -38.55 16 16 C -0.23 -12.62 9.93 84.03 0.83 -11.79 16 17 H 0.07 3.92 7.83 -2.91 -0.02 3.90 16 18 C -0.08 -4.50 5.50 84.86 0.47 -4.03 16 19 N -0.97 -59.23 13.06 21.65 0.28 -58.95 16 20 Si 0.97 45.98 29.55 68.60 2.03 48.00 16 21 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 22 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16 23 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 24 C -0.15 -4.69 4.84 30.59 0.15 -4.55 16 25 C -0.11 -2.57 4.91 30.60 0.15 -2.42 16 26 H 0.04 0.61 8.14 -2.38 -0.02 0.59 16 27 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.09 1.11 8.14 -2.38 -0.02 1.09 16 33 H 0.11 1.59 7.42 -2.39 -0.02 1.57 16 34 H 0.10 1.72 8.11 -2.39 -0.02 1.70 16 35 H 0.06 1.26 6.70 -2.38 -0.02 1.24 16 36 H 0.09 1.09 6.69 -2.39 -0.02 1.07 16 37 H 0.10 1.64 4.95 -2.39 -0.01 1.63 16 38 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 39 H 0.06 2.21 6.11 -2.39 -0.01 2.20 16 40 H 0.08 2.20 8.14 -2.39 -0.02 2.19 16 41 H 0.05 1.75 7.60 -2.38 -0.02 1.73 16 42 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 43 H 0.03 1.34 8.08 -2.39 -0.02 1.32 16 44 H 0.37 20.09 7.80 -92.71 -0.72 19.36 16 45 H 0.25 14.75 8.31 -92.71 -0.77 13.97 16 46 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 47 H 0.09 2.59 3.66 -2.39 -0.01 2.58 16 48 H 0.08 1.85 8.14 -2.38 -0.02 1.83 16 49 H 0.09 1.64 6.89 -2.39 -0.02 1.63 16 Total: -1.00 -77.04 379.72 2.85 -74.20 By element: Atomic # 1 Polarization: 31.21 SS G_CDS: 0.21 Total: 31.42 kcal Atomic # 6 Polarization: -2.17 SS G_CDS: 6.37 Total: 4.20 kcal Atomic # 7 Polarization: -110.75 SS G_CDS: -3.22 Total: -113.97 kcal Atomic # 8 Polarization: -41.31 SS G_CDS: -2.54 Total: -43.86 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 2.03 Total: 48.00 kcal Total: -77.04 2.85 -74.20 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755272765.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.439 kcal (2) G-P(sol) polarization free energy of solvation -77.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds