Wall clock time and date at job start Tue Mar 31 2020 10:36:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 113.99815 * 2 1 4 4 C 1.53004 * 109.46833 * 180.02562 * 3 2 1 5 5 C 1.53006 * 109.46851 * 175.68259 * 4 3 2 6 6 C 1.50693 * 110.43527 * 297.70910 * 5 4 3 7 7 O 1.21286 * 120.00191 * 121.70954 * 6 5 4 8 8 N 1.34779 * 120.00078 * 301.71339 * 6 5 4 9 9 C 1.46503 * 119.99837 * 174.99286 * 8 6 5 10 10 C 1.53007 * 109.46916 * 179.97438 * 9 8 6 11 11 H 1.09005 * 109.47015 * 294.99591 * 10 9 8 12 12 C 1.53000 * 109.46949 * 174.99882 * 10 9 8 13 13 O 1.42894 * 109.47204 * 304.99859 * 12 10 9 14 14 N 1.46500 * 109.47354 * 54.99772 * 10 9 8 15 15 C 1.36931 * 120.00064 * 205.00050 * 14 10 9 16 16 H 1.08005 * 120.00307 * 0.02562 * 15 14 10 17 17 C 1.38815 * 120.00156 * 180.02562 * 15 14 10 18 18 N 1.31617 * 119.99679 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99913 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47039 * 90.00255 * 19 17 15 21 21 H 1.48502 * 109.46958 * 209.99569 * 19 17 15 22 22 H 1.48491 * 109.47276 * 329.99910 * 19 17 15 23 23 C 1.54881 * 110.59977 * 60.32880 * 5 4 3 24 24 C 1.54891 * 102.74954 * 156.67503 * 23 5 4 25 25 C 1.54269 * 104.19397 * 322.05635 * 24 23 5 26 26 C 1.53879 * 106.59890 * 23.61042 * 25 24 23 27 27 H 1.09000 * 109.46916 * 299.99727 * 1 2 3 28 28 H 1.08999 * 109.47270 * 60.00090 * 1 2 3 29 29 H 1.09005 * 109.46916 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47428 * 60.00067 * 3 2 1 31 31 H 1.09001 * 109.47344 * 299.99583 * 3 2 1 32 32 H 1.09004 * 109.46984 * 55.68365 * 4 3 2 33 33 H 1.08995 * 109.47117 * 295.67792 * 4 3 2 34 34 H 0.97002 * 120.00063 * 354.98693 * 8 6 5 35 35 H 1.08994 * 109.47361 * 59.99991 * 9 8 6 36 36 H 1.09003 * 109.47117 * 299.99323 * 9 8 6 37 37 H 1.09003 * 109.46953 * 184.99547 * 12 10 9 38 38 H 1.09004 * 109.47304 * 65.00227 * 12 10 9 39 39 H 0.96705 * 114.00008 * 179.97438 * 13 12 10 40 40 H 0.97000 * 119.99897 * 24.99926 * 14 10 9 41 41 H 0.97000 * 119.99914 * 179.97438 * 18 17 15 42 42 H 1.08996 * 110.75726 * 274.99219 * 23 5 4 43 43 H 1.09009 * 110.75686 * 38.36299 * 23 5 4 44 44 H 1.09004 * 110.48587 * 203.38363 * 24 23 5 45 45 H 1.08994 * 110.48536 * 80.73590 * 24 23 5 46 46 H 1.08996 * 110.03353 * 264.32152 * 25 24 23 47 47 H 1.09004 * 110.02886 * 142.89209 * 25 24 23 48 48 H 1.08999 * 110.02780 * 240.71457 * 26 25 24 49 49 H 1.08995 * 110.03096 * 119.28270 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.1574 2.5783 -0.1092 6 6 3.7634 3.2305 -1.4094 7 8 3.1780 4.2926 -1.4022 8 7 4.0615 2.6333 -2.5803 9 6 3.5836 3.2102 -3.8393 10 6 4.0579 2.3454 -5.0091 11 1 5.1456 2.3815 -5.0699 12 6 3.4563 2.8757 -6.3121 13 8 2.0340 2.9379 -6.1895 14 7 3.6261 0.9613 -4.7997 15 6 4.3166 -0.0671 -5.3834 16 1 5.1798 0.1422 -5.9978 17 6 3.9072 -1.3786 -5.1854 18 7 2.8556 -1.6337 -4.4362 19 14 4.8496 -2.7815 -5.9811 20 1 5.9231 -3.2400 -5.0632 21 1 3.9213 -3.9070 -6.2584 22 1 5.4535 -2.3128 -7.2542 23 6 3.7312 3.4602 1.0905 24 6 4.8597 4.5192 1.1543 25 6 6.1398 3.7289 0.8127 26 6 5.6932 2.4948 0.0092 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.6886 1.8464 0.8899 31 1 1.6886 1.8464 -0.8900 32 1 3.8515 0.5785 -0.8497 33 1 3.8629 0.7119 0.9253 34 1 4.5926 1.8216 -2.5895 35 1 3.9799 4.2195 -3.9501 36 1 2.4942 3.2463 -3.8321 37 1 3.7216 2.2089 -7.1325 38 1 3.8476 3.8730 -6.5135 39 1 1.5850 3.2666 -6.9804 40 1 2.8511 0.7733 -4.2475 41 1 2.5692 -2.5501 -4.2981 42 1 2.7680 3.9332 0.8994 43 1 3.6994 2.8739 2.0089 44 1 4.9291 4.9430 2.1562 45 1 4.6882 5.3043 0.4180 46 1 6.6415 3.4167 1.7285 47 1 6.8089 4.3441 0.2110 48 1 5.9782 1.5837 0.5353 49 1 6.1457 2.5111 -0.9823 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755647909.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:36:36 Heat of formation + Delta-G solvation = -164.041904 kcal Electronic energy + Delta-G solvation = -28515.956986 eV Core-core repulsion = 24669.645096 eV Total energy + Delta-G solvation = -3846.311890 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.204 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.64364 -39.10330 -38.65429 -37.89686 -36.38278 -35.20312 -33.68838 -32.92908 -30.25664 -29.56589 -28.84949 -26.94582 -26.47028 -25.59435 -23.68519 -23.11517 -21.64614 -21.22891 -20.09358 -19.31271 -18.17052 -17.84533 -17.53689 -17.24110 -17.02015 -16.52578 -16.25392 -16.00572 -15.80174 -15.49814 -15.30174 -15.06132 -14.86234 -14.56150 -14.28633 -14.22643 -13.90019 -13.62557 -13.24869 -13.01409 -12.75561 -12.64689 -12.59335 -12.43748 -12.26074 -12.22514 -12.11469 -11.91820 -11.88670 -11.77115 -11.70598 -11.53456 -11.27725 -10.99744 -10.73858 -10.67264 -10.57551 -9.95651 -8.97919 -7.86250 -5.16046 1.50500 1.50938 1.58958 1.67345 2.29859 2.59215 2.75740 3.44686 3.48340 3.59934 3.62666 3.76942 3.90410 4.00337 4.05637 4.09897 4.19918 4.35460 4.42035 4.42663 4.45268 4.49519 4.54239 4.55321 4.57227 4.60018 4.69087 4.79374 4.82438 4.86050 4.94992 4.99321 5.02508 5.09380 5.11128 5.15893 5.21917 5.28327 5.36830 5.53337 5.54155 5.58331 6.20656 6.30641 6.63118 7.04717 7.28633 7.39285 8.11139 8.37136 9.35569 Molecular weight = 314.20amu Principal moments of inertia in cm(-1) A = 0.010374 B = 0.004817 C = 0.004277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2698.443788 B = 5811.672766 C = 6545.770607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.411 6.411 3 C 0.067 3.933 4 C -0.097 4.097 5 C -0.075 4.075 6 C 0.523 3.477 7 O -0.580 6.580 8 N -0.712 5.712 9 C 0.132 3.868 10 C 0.161 3.839 11 H 0.078 0.922 12 C 0.065 3.935 13 O -0.584 6.584 14 N -0.720 5.720 15 C -0.239 4.239 16 H 0.080 0.920 17 C -0.067 4.067 18 N -0.960 5.960 19 Si 0.966 3.034 20 H -0.287 1.287 21 H -0.304 1.304 22 H -0.271 1.271 23 C -0.100 4.100 24 C -0.121 4.121 25 C -0.118 4.118 26 C -0.112 4.112 27 H 0.062 0.938 28 H 0.029 0.971 29 H 0.095 0.905 30 H 0.069 0.931 31 H 0.017 0.983 32 H 0.058 0.942 33 H 0.103 0.897 34 H 0.407 0.593 35 H 0.074 0.926 36 H 0.046 0.954 37 H 0.036 0.964 38 H 0.064 0.936 39 H 0.385 0.615 40 H 0.372 0.628 41 H 0.247 0.753 42 H 0.059 0.941 43 H 0.097 0.903 44 H 0.086 0.914 45 H 0.047 0.953 46 H 0.088 0.912 47 H 0.062 0.938 48 H 0.094 0.906 49 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.942 10.522 10.182 15.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.330 6.330 3 C -0.009 4.009 4 C -0.135 4.135 5 C -0.078 4.078 6 C 0.311 3.689 7 O -0.461 6.461 8 N -0.362 5.362 9 C 0.007 3.993 10 C 0.052 3.948 11 H 0.095 0.905 12 C -0.016 4.016 13 O -0.391 6.391 14 N -0.359 5.359 15 C -0.371 4.371 16 H 0.097 0.903 17 C -0.260 4.260 18 N -0.610 5.610 19 Si 0.796 3.204 20 H -0.214 1.214 21 H -0.231 1.231 22 H -0.196 1.196 23 C -0.138 4.138 24 C -0.159 4.159 25 C -0.156 4.156 26 C -0.150 4.150 27 H 0.081 0.919 28 H 0.048 0.952 29 H 0.113 0.887 30 H 0.087 0.913 31 H 0.036 0.964 32 H 0.077 0.923 33 H 0.121 0.879 34 H 0.243 0.757 35 H 0.092 0.908 36 H 0.064 0.936 37 H 0.055 0.945 38 H 0.082 0.918 39 H 0.233 0.767 40 H 0.203 0.797 41 H 0.056 0.944 42 H 0.078 0.922 43 H 0.116 0.884 44 H 0.104 0.896 45 H 0.066 0.934 46 H 0.107 0.893 47 H 0.081 0.919 48 H 0.113 0.887 49 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.911 10.776 10.641 15.641 hybrid contribution -0.452 -1.019 -1.461 1.838 sum 3.459 9.756 9.180 13.835 Atomic orbital electron populations 1.22862 0.79932 1.03617 1.00296 1.87862 1.21222 1.28522 1.95440 1.22522 0.94619 0.84262 0.99526 1.21509 0.92777 0.94886 1.04337 1.21611 0.98483 0.95044 0.92635 1.20812 0.77784 0.84392 0.85956 1.90609 1.43754 1.23542 1.88196 1.46002 1.54792 1.29692 1.05761 1.21325 0.98577 0.96429 0.82989 1.20834 0.97553 0.84562 0.91876 0.90461 1.22875 0.81079 0.98881 0.98736 1.86525 1.19857 1.89633 1.43038 1.42426 1.34205 1.00013 1.59304 1.19561 1.07743 0.86473 1.23295 0.90254 1.25448 0.99226 0.99619 1.01688 1.69853 1.28235 1.18685 1.44199 0.85266 0.77370 0.79421 0.78377 1.21432 1.23111 1.19588 1.22474 0.99075 0.96371 0.95876 1.22323 0.94208 0.97442 1.01893 1.22133 0.97459 0.95452 1.00535 1.22280 0.90484 1.00776 1.01433 0.91950 0.95201 0.88664 0.91316 0.96445 0.92293 0.87870 0.75671 0.90763 0.93584 0.94523 0.91775 0.76728 0.79666 0.94399 0.92233 0.88439 0.89588 0.93430 0.89306 0.91913 0.88703 0.92047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.83 11.01 113.37 1.25 2.08 16 2 O -0.41 -14.63 10.70 -148.98 -1.59 -16.22 16 3 C 0.07 2.15 5.50 71.98 0.40 2.54 16 4 C -0.10 -2.81 4.47 30.60 0.14 -2.67 16 5 C -0.07 -1.98 0.47 -51.86 -0.02 -2.00 16 6 C 0.52 17.76 5.10 87.65 0.45 18.21 16 7 O -0.58 -22.82 15.10 -3.05 -0.05 -22.86 16 8 N -0.71 -25.00 5.02 -463.05 -2.33 -27.32 16 9 C 0.13 4.76 5.12 86.38 0.44 5.20 16 10 C 0.16 6.05 2.84 44.99 0.13 6.18 16 11 H 0.08 2.71 8.08 -2.38 -0.02 2.69 16 12 C 0.07 2.17 6.86 71.98 0.49 2.67 16 13 O -0.58 -20.66 12.64 -148.98 -1.88 -22.54 16 14 N -0.72 -34.51 4.51 -322.92 -1.46 -35.97 16 15 C -0.24 -12.49 9.93 84.04 0.83 -11.65 16 16 H 0.08 3.91 7.83 -2.91 -0.02 3.89 16 17 C -0.07 -3.70 5.50 84.86 0.47 -3.24 16 18 N -0.96 -58.04 13.06 21.65 0.28 -57.76 16 19 Si 0.97 45.03 29.55 68.60 2.03 47.06 16 20 H -0.29 -13.13 7.11 99.48 0.71 -12.43 16 21 H -0.30 -14.65 7.11 99.48 0.71 -13.94 16 22 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 23 C -0.10 -2.30 4.46 31.88 0.14 -2.16 16 24 C -0.12 -2.52 6.52 31.67 0.21 -2.31 16 25 C -0.12 -2.18 6.80 31.32 0.21 -1.96 16 26 C -0.11 -2.44 5.92 31.32 0.19 -2.25 16 27 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 28 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.09 2.46 8.14 -2.38 -0.02 2.44 16 30 H 0.07 1.84 7.40 -2.39 -0.02 1.82 16 31 H 0.02 0.65 7.20 -2.39 -0.02 0.63 16 32 H 0.06 2.04 7.61 -2.38 -0.02 2.02 16 33 H 0.10 2.46 8.09 -2.39 -0.02 2.44 16 34 H 0.41 14.67 7.47 -92.71 -0.69 13.98 16 35 H 0.07 2.45 8.14 -2.39 -0.02 2.44 16 36 H 0.05 1.93 7.40 -2.39 -0.02 1.91 16 37 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.06 1.67 8.14 -2.38 -0.02 1.65 16 39 H 0.38 9.57 9.12 -74.05 -0.68 8.90 16 40 H 0.37 20.39 7.80 -92.71 -0.72 19.66 16 41 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 42 H 0.06 1.60 7.37 -2.39 -0.02 1.58 16 43 H 0.10 1.76 8.06 -2.38 -0.02 1.74 16 44 H 0.09 1.39 8.14 -2.38 -0.02 1.37 16 45 H 0.05 1.22 7.64 -2.39 -0.02 1.20 16 46 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 47 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 48 H 0.09 1.75 7.80 -2.39 -0.02 1.73 16 49 H 0.06 1.44 7.50 -2.39 -0.02 1.42 16 Total: -1.00 -70.32 390.34 -0.82 -71.14 By element: Atomic # 1 Polarization: 56.99 SS G_CDS: -1.14 Total: 55.85 kcal Atomic # 6 Polarization: 3.32 SS G_CDS: 5.32 Total: 8.63 kcal Atomic # 7 Polarization: -117.55 SS G_CDS: -3.50 Total: -121.05 kcal Atomic # 8 Polarization: -58.11 SS G_CDS: -3.52 Total: -61.63 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Total: -70.32 -0.82 -71.14 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755647909.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.906 kcal (2) G-P(sol) polarization free energy of solvation -70.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds