Wall clock time and date at job start Tue Mar 31 2020 10:35:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36937 * 119.99553 * 2 1 4 4 H 1.08004 * 120.00502 * 321.91719 * 3 2 1 5 5 C 1.38818 * 120.00172 * 141.91847 * 3 2 1 6 6 N 1.31616 * 119.99981 * 157.19036 * 5 3 2 7 7 Si 1.86800 * 119.99613 * 337.19586 * 5 3 2 8 8 H 1.48500 * 109.47451 * 95.67297 * 7 5 3 9 9 H 1.48507 * 109.46621 * 215.67059 * 7 5 3 10 10 H 1.48506 * 109.47107 * 335.66611 * 7 5 3 11 11 C 1.46495 * 120.00611 * 180.02562 * 2 1 3 12 12 C 1.53000 * 109.47470 * 89.99616 * 11 2 1 13 13 H 1.09003 * 109.47045 * 305.00384 * 12 11 2 14 14 O 1.42895 * 109.46985 * 65.00288 * 12 11 2 15 15 C 1.52995 * 109.47285 * 185.00286 * 12 11 2 16 16 N 1.46496 * 109.47077 * 179.97438 * 15 12 11 17 17 C 1.46501 * 120.00365 * 270.00233 * 16 15 12 18 18 C 1.34784 * 119.99717 * 90.00277 * 16 15 12 19 19 O 1.21283 * 119.99754 * 359.97438 * 18 16 15 20 20 C 1.50701 * 120.00050 * 180.02562 * 18 16 15 21 21 O 1.42897 * 109.47198 * 179.97438 * 20 18 16 22 22 C 1.42903 * 114.00271 * 179.97438 * 21 20 18 23 23 C 1.54891 * 110.48449 * 93.23585 * 22 21 20 24 24 C 1.55235 * 102.58429 * 156.67896 * 23 22 21 25 25 C 1.54272 * 104.23293 * 322.08805 * 24 23 22 26 26 C 1.53869 * 106.59783 * 23.60999 * 25 24 23 27 27 H 1.09009 * 109.47153 * 265.68218 * 1 2 3 28 28 H 1.08996 * 109.47788 * 25.68496 * 1 2 3 29 29 H 1.09001 * 109.47091 * 145.69110 * 1 2 3 30 30 H 0.97004 * 119.99754 * 180.02562 * 6 5 3 31 31 H 1.09004 * 109.46661 * 330.00053 * 11 2 1 32 32 H 1.09001 * 109.47174 * 210.00203 * 11 2 1 33 33 H 0.96701 * 114.00262 * 59.99778 * 14 12 11 34 34 H 1.09006 * 109.47115 * 60.00334 * 15 12 11 35 35 H 1.08997 * 109.47523 * 300.00253 * 15 12 11 36 36 H 1.09000 * 109.46924 * 269.99978 * 17 16 15 37 37 H 1.08999 * 109.46853 * 29.99932 * 17 16 15 38 38 H 1.09004 * 109.46941 * 149.99982 * 17 16 15 39 39 H 1.09004 * 109.47045 * 59.99475 * 20 18 16 40 40 H 1.09006 * 109.47059 * 299.99910 * 20 18 16 41 41 H 1.09000 * 110.43045 * 330.70216 * 22 21 20 42 42 H 1.08993 * 110.76017 * 275.07491 * 23 22 21 43 43 H 1.09004 * 110.75124 * 38.44546 * 23 22 21 44 44 H 1.09005 * 110.46765 * 203.39809 * 24 23 22 45 45 H 1.08995 * 110.58391 * 80.83704 * 24 23 22 46 46 H 1.09003 * 110.02877 * 264.32249 * 25 24 23 47 47 H 1.08999 * 110.07015 * 142.91887 * 25 24 23 48 48 H 1.08999 * 110.03302 * 240.71295 * 26 25 24 49 49 H 1.09005 * 110.07170 * 119.30504 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 1.7820 2.0218 -0.5769 5 6 3.3161 1.3141 0.7415 6 7 4.2019 2.2333 0.4211 7 14 3.6286 0.1816 2.1938 8 1 4.4687 -0.9626 1.7576 9 1 4.3324 0.9325 3.2645 10 1 2.3333 -0.3252 2.7141 11 6 2.1976 -1.2686 -0.0006 12 6 2.4526 -1.7097 -1.4432 13 1 1.5062 -1.7541 -1.9823 14 8 3.3209 -0.7715 -2.0817 15 6 3.1062 -3.0930 -1.4456 16 7 3.3498 -3.5156 -2.8270 17 6 2.3249 -4.2686 -3.5543 18 6 4.5168 -3.2116 -3.4288 19 8 5.3651 -2.5879 -2.8269 20 6 4.7673 -3.6458 -4.8500 21 8 6.0639 -3.2076 -5.2605 22 6 6.4029 -3.5703 -6.6006 23 6 6.0325 -2.4298 -7.5810 24 6 6.9732 -2.7008 -8.7858 25 6 8.2937 -3.1672 -8.1387 26 6 7.9310 -3.7200 -6.7493 27 1 -0.3634 -0.0774 1.0248 28 1 -0.3634 0.9260 -0.4454 29 1 -0.3633 -0.8489 -0.5793 30 1 5.0172 2.3225 0.9391 31 1 1.6085 -2.0285 0.5129 32 1 3.1500 -1.1384 0.5134 33 1 4.1836 -0.6802 -1.6545 34 1 2.4437 -3.8087 -0.9586 35 1 4.0525 -3.0488 -0.9066 36 1 2.4760 -5.3361 -3.3937 37 1 1.3378 -3.9827 -3.1911 38 1 2.3986 -4.0473 -4.6191 39 1 4.0123 -3.2069 -5.5024 40 1 4.7140 -4.7328 -4.9126 41 1 5.8997 -4.4949 -6.8834 42 1 4.9869 -2.5019 -7.8801 43 1 6.2426 -1.4563 -7.1380 44 1 7.1311 -1.7872 -9.3591 45 1 6.5633 -3.4840 -9.4234 46 1 8.9782 -2.3248 -8.0384 47 1 8.7511 -3.9496 -8.7442 48 1 8.4396 -3.1461 -5.9747 49 1 8.2117 -4.7710 -6.6799 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755798743.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:35:23 Heat of formation + Delta-G solvation = -128.690665 kcal Electronic energy + Delta-G solvation = -27638.501877 eV Core-core repulsion = 23793.722932 eV Total energy + Delta-G solvation = -3844.778945 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.204 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.10046 -39.76519 -38.80320 -36.95572 -36.61298 -35.97428 -33.71130 -31.78006 -29.90027 -29.57612 -28.41863 -27.90938 -27.80449 -26.13130 -23.40581 -22.49087 -21.70299 -21.26739 -20.43111 -18.98602 -18.35016 -17.96487 -17.45903 -17.36233 -17.07371 -16.59224 -16.25312 -15.98705 -15.77570 -15.57277 -15.27477 -14.97530 -14.57726 -14.33833 -14.30707 -14.11426 -13.82710 -13.71861 -13.46783 -13.24925 -13.10400 -13.07106 -12.68559 -12.61923 -12.45314 -12.33015 -12.10366 -12.04605 -11.98648 -11.95359 -11.56835 -11.53295 -11.33824 -11.11061 -10.74351 -10.61143 -10.52249 -9.57458 -8.67368 -8.15501 -5.51797 1.27551 1.37799 1.49275 1.60983 1.80517 2.42339 2.85652 3.05466 3.42481 3.55059 3.66917 3.69079 3.74095 3.99157 4.02138 4.07999 4.17418 4.23122 4.29230 4.32871 4.38561 4.50396 4.52000 4.56558 4.63319 4.64433 4.71243 4.73996 4.76292 4.79819 4.92279 4.94562 5.04461 5.05019 5.11755 5.15874 5.18849 5.22274 5.26503 5.45049 5.50513 5.96506 6.17922 6.19285 6.45112 6.84863 7.03475 7.24921 7.66195 8.06202 9.04703 Molecular weight = 314.20amu Principal moments of inertia in cm(-1) A = 0.017636 B = 0.003181 C = 0.002978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1587.324172 B = 8799.659310 C = 9398.945387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.123 3.877 2 N -0.619 5.619 3 C -0.241 4.241 4 H 0.028 0.972 5 C -0.022 4.022 6 N -0.949 5.949 7 Si 0.942 3.058 8 H -0.278 1.278 9 H -0.311 1.311 10 H -0.254 1.254 11 C 0.102 3.898 12 C 0.080 3.920 13 H 0.098 0.902 14 O -0.558 6.558 15 C 0.087 3.913 16 N -0.607 5.607 17 C 0.068 3.932 18 C 0.502 3.498 19 O -0.573 6.573 20 C 0.054 3.946 21 O -0.393 6.393 22 C 0.076 3.924 23 C -0.152 4.152 24 C -0.117 4.117 25 C -0.121 4.121 26 C -0.126 4.126 27 H 0.019 0.981 28 H 0.034 0.966 29 H 0.063 0.937 30 H 0.259 0.741 31 H 0.086 0.914 32 H 0.031 0.969 33 H 0.362 0.638 34 H 0.125 0.875 35 H 0.056 0.944 36 H 0.084 0.916 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.097 0.903 40 H 0.113 0.887 41 H 0.096 0.904 42 H 0.080 0.920 43 H 0.049 0.951 44 H 0.070 0.930 45 H 0.087 0.913 46 H 0.059 0.941 47 H 0.086 0.914 48 H 0.050 0.950 49 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.935 -22.853 -17.086 28.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.021 4.021 2 N -0.344 5.344 3 C -0.371 4.371 4 H 0.046 0.954 5 C -0.217 4.217 6 N -0.593 5.593 7 Si 0.771 3.229 8 H -0.205 1.205 9 H -0.240 1.240 10 H -0.178 1.178 11 C -0.024 4.024 12 C 0.018 3.982 13 H 0.115 0.885 14 O -0.362 6.362 15 C -0.037 4.037 16 N -0.341 5.341 17 C -0.073 4.073 18 C 0.290 3.710 19 O -0.451 6.451 20 C -0.026 4.026 21 O -0.312 6.312 22 C 0.019 3.981 23 C -0.190 4.190 24 C -0.155 4.155 25 C -0.158 4.158 26 C -0.164 4.164 27 H 0.037 0.963 28 H 0.053 0.947 29 H 0.082 0.918 30 H 0.068 0.932 31 H 0.104 0.896 32 H 0.049 0.951 33 H 0.208 0.792 34 H 0.143 0.857 35 H 0.075 0.925 36 H 0.103 0.897 37 H 0.104 0.896 38 H 0.104 0.896 39 H 0.114 0.886 40 H 0.131 0.869 41 H 0.114 0.886 42 H 0.098 0.902 43 H 0.068 0.932 44 H 0.089 0.911 45 H 0.106 0.894 46 H 0.078 0.922 47 H 0.104 0.896 48 H 0.069 0.931 49 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -1.804 -22.299 -17.021 28.110 hybrid contribution 0.893 0.368 1.283 1.606 sum -0.911 -21.930 -15.738 27.008 Atomic orbital electron populations 1.21194 0.82043 1.00259 0.98570 1.44036 1.02311 1.01259 1.86752 1.18481 1.05981 0.91178 1.21453 0.95389 1.26016 0.96762 0.98577 1.00388 1.70043 1.09270 1.39214 1.40786 0.85874 0.78145 0.78256 0.80592 1.20515 1.24006 1.17834 1.21965 0.96317 0.88379 0.95698 1.22989 0.93293 0.87147 0.94820 0.88457 1.86469 1.28972 1.64288 1.56438 1.22216 1.01548 0.96839 0.83087 1.47748 1.16414 1.55845 1.14090 1.22176 0.91148 0.96528 0.97458 1.20976 0.81735 0.78987 0.89271 1.90702 1.46522 1.40883 1.67017 1.22364 0.87142 1.01298 0.91747 1.88065 1.32677 1.79255 1.31187 1.23349 0.96574 0.97760 0.80459 1.23088 1.00721 0.98620 0.96610 1.22329 0.94611 1.02071 0.96468 1.22095 0.97889 1.01090 0.94747 1.22227 0.93964 1.02164 0.98047 0.96298 0.94689 0.91833 0.93213 0.89603 0.95062 0.79202 0.85733 0.92513 0.89747 0.89553 0.89635 0.88577 0.86927 0.88588 0.90178 0.93198 0.91116 0.89443 0.92241 0.89579 0.93103 0.89750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 4.70 10.70 127.77 1.37 6.07 16 2 N -0.62 -29.51 2.45 -726.93 -1.78 -31.29 16 3 C -0.24 -14.26 9.39 84.03 0.79 -13.48 16 4 H 0.03 1.89 8.06 -2.91 -0.02 1.87 16 5 C -0.02 -1.31 5.29 84.86 0.45 -0.86 16 6 N -0.95 -62.55 13.97 21.65 0.30 -62.24 16 7 Si 0.94 47.92 25.10 68.60 1.72 49.64 16 8 H -0.28 -13.59 6.68 99.48 0.66 -12.93 16 9 H -0.31 -16.17 7.11 99.48 0.71 -15.46 16 10 H -0.25 -12.05 7.11 99.48 0.71 -11.35 16 11 C 0.10 4.17 4.21 86.38 0.36 4.53 16 12 C 0.08 2.93 3.48 30.59 0.11 3.04 16 13 H 0.10 3.28 8.14 -2.39 -0.02 3.26 16 14 O -0.56 -26.97 11.62 -140.59 -1.63 -28.60 16 15 C 0.09 2.51 5.15 86.38 0.44 2.95 16 16 N -0.61 -15.33 2.83 -846.75 -2.39 -17.72 16 17 C 0.07 0.88 10.24 127.77 1.31 2.19 16 18 C 0.50 15.99 7.26 87.66 0.64 16.63 16 19 O -0.57 -25.36 14.87 21.62 0.32 -25.04 16 20 C 0.05 1.20 4.82 71.24 0.34 1.54 16 21 O -0.39 -11.27 9.59 -129.94 -1.25 -12.51 16 22 C 0.08 1.47 3.33 31.67 0.11 1.57 16 23 C -0.15 -2.84 6.65 32.01 0.21 -2.63 16 24 C -0.12 -1.59 6.84 31.79 0.22 -1.38 16 25 C -0.12 -1.74 6.80 31.32 0.21 -1.53 16 26 C -0.13 -2.34 6.56 31.31 0.21 -2.14 16 27 H 0.02 0.68 8.14 -2.38 -0.02 0.66 16 28 H 0.03 1.38 8.00 -2.39 -0.02 1.36 16 29 H 0.06 1.91 8.10 -2.39 -0.02 1.89 16 30 H 0.26 16.30 8.31 -92.71 -0.77 15.53 16 31 H 0.09 2.77 8.07 -2.39 -0.02 2.75 16 32 H 0.03 1.46 3.38 -2.39 -0.01 1.45 16 33 H 0.36 19.27 8.45 -74.06 -0.63 18.64 16 34 H 0.12 2.45 8.07 -2.38 -0.02 2.43 16 35 H 0.06 1.98 7.42 -2.39 -0.02 1.96 16 36 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 37 H 0.09 0.96 8.07 -2.39 -0.02 0.94 16 38 H 0.09 0.83 6.44 -2.39 -0.02 0.82 16 39 H 0.10 1.73 7.40 -2.38 -0.02 1.72 16 40 H 0.11 1.57 8.07 -2.38 -0.02 1.55 16 41 H 0.10 1.24 7.84 -2.39 -0.02 1.23 16 42 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 43 H 0.05 1.24 8.14 -2.38 -0.02 1.22 16 44 H 0.07 0.94 8.14 -2.38 -0.02 0.92 16 45 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 46 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 47 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 48 H 0.05 1.23 8.07 -2.39 -0.02 1.21 16 49 H 0.08 1.25 8.14 -2.38 -0.02 1.23 16 Total: -1.00 -86.18 387.21 2.31 -83.87 By element: Atomic # 1 Polarization: 27.13 SS G_CDS: 0.25 Total: 27.38 kcal Atomic # 6 Polarization: 9.75 SS G_CDS: 6.76 Total: 16.51 kcal Atomic # 7 Polarization: -107.38 SS G_CDS: -3.87 Total: -111.25 kcal Atomic # 8 Polarization: -63.59 SS G_CDS: -2.56 Total: -66.15 kcal Atomic # 14 Polarization: 47.92 SS G_CDS: 1.72 Total: 49.64 kcal Total: -86.18 2.31 -83.87 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755798743.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.822 kcal (2) G-P(sol) polarization free energy of solvation -86.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds