Wall clock time and date at job start Tue Mar 31 2020 10:35:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42903 * 113.99590 * 2 1 4 4 C 1.53002 * 109.46791 * 184.63094 * 3 2 1 5 5 C 1.50696 * 112.90653 * 313.48652 * 4 3 2 6 6 O 1.21278 * 120.00117 * 111.76520 * 5 4 3 7 7 N 1.34787 * 120.00237 * 291.75948 * 5 4 3 8 8 C 1.46508 * 119.99391 * 4.02729 * 7 5 4 9 9 C 1.46493 * 120.00027 * 184.02036 * 7 5 4 10 10 C 1.53003 * 109.46868 * 90.00719 * 9 7 5 11 11 H 1.08994 * 109.46828 * 304.99136 * 10 9 7 12 12 O 1.42898 * 109.47320 * 64.99865 * 10 9 7 13 13 C 1.53002 * 109.46864 * 184.99757 * 10 9 7 14 14 N 1.46496 * 109.47049 * 179.97438 * 13 10 9 15 15 C 1.46508 * 119.99736 * 269.99996 * 14 13 10 16 16 C 1.36936 * 120.00272 * 89.99828 * 14 13 10 17 17 H 1.07999 * 119.99946 * 23.17120 * 16 14 13 18 18 C 1.38814 * 120.00172 * 203.16613 * 16 14 13 19 19 N 1.31627 * 119.99674 * 11.76686 * 18 16 14 20 20 Si 1.86795 * 120.00021 * 191.75825 * 18 16 14 21 21 H 1.48502 * 109.47170 * 90.00844 * 20 18 16 22 22 H 1.48502 * 109.47086 * 210.00170 * 20 18 16 23 23 H 1.48501 * 109.47354 * 330.00263 * 20 18 16 24 24 C 1.53777 * 113.61417 * 182.23504 * 4 3 2 25 25 C 1.53781 * 87.08180 * 220.01875 * 24 4 3 26 26 C 1.53777 * 113.61381 * 84.73679 * 4 3 2 27 27 H 1.09004 * 109.47220 * 299.98999 * 1 2 3 28 28 H 1.08996 * 109.48022 * 59.99835 * 1 2 3 29 29 H 1.09003 * 109.47386 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46821 * 64.63169 * 3 2 1 31 31 H 1.09000 * 109.47166 * 304.63002 * 3 2 1 32 32 H 1.08997 * 109.47225 * 85.57935 * 8 7 5 33 33 H 1.09000 * 109.46540 * 205.58107 * 8 7 5 34 34 H 1.09003 * 109.46893 * 325.57231 * 8 7 5 35 35 H 1.09004 * 109.46826 * 210.00015 * 9 7 5 36 36 H 1.08997 * 109.47318 * 330.00474 * 9 7 5 37 37 H 0.96696 * 114.00050 * 59.99615 * 12 10 9 38 38 H 1.09000 * 109.47162 * 300.00010 * 13 10 9 39 39 H 1.09003 * 109.47318 * 59.99687 * 13 10 9 40 40 H 1.08994 * 109.47474 * 95.17426 * 15 14 13 41 41 H 1.09005 * 109.46767 * 215.17141 * 15 14 13 42 42 H 1.08995 * 109.47096 * 335.16987 * 15 14 13 43 43 H 0.96995 * 119.99498 * 179.97438 * 19 18 16 44 44 H 1.08999 * 113.61477 * 105.46610 * 24 4 3 45 45 H 1.09000 * 113.61572 * 334.56979 * 24 4 3 46 46 H 1.09000 * 113.61202 * 139.98139 * 25 24 4 47 47 H 1.09003 * 113.61027 * 270.88134 * 25 24 4 48 48 H 1.08999 * 113.61487 * 25.43632 * 26 4 3 49 49 H 1.08998 * 113.69115 * 254.53385 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5311 1.1867 -0.1165 5 6 4.1121 0.1561 0.8170 6 8 4.5966 -0.8620 0.3704 7 7 4.0933 0.3659 2.1483 8 6 3.4301 1.5531 2.6934 9 6 4.7360 -0.5931 3.0501 10 6 6.1964 -0.1909 3.2656 11 1 6.6946 -0.1009 2.3003 12 8 6.2493 1.0636 3.9478 13 6 6.9008 -1.2583 4.1054 14 7 8.2992 -0.8735 4.3112 15 6 9.3244 -1.2992 3.3551 16 6 8.6482 -0.1158 5.3972 17 1 8.0201 -0.1097 6.2757 18 6 9.8095 0.6442 5.3690 19 7 10.4510 0.8238 4.2337 20 14 10.4615 1.4122 6.9419 21 1 11.3933 0.4655 7.6058 22 1 11.1816 2.6697 6.6173 23 1 9.3280 1.7121 7.8533 24 6 4.2600 2.5399 -0.0707 25 6 5.1855 1.9895 -1.1686 26 6 4.0296 1.0561 -1.5653 27 1 -0.3634 0.5137 0.8901 28 1 -0.3635 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 1.7556 1.8165 0.9286 31 1 1.6244 1.8750 -0.8456 32 1 2.3678 1.3475 2.8253 33 1 3.8734 1.8070 3.6563 34 1 3.5558 2.3882 2.0042 35 1 4.2151 -0.5967 4.0076 36 1 4.6947 -1.5895 2.6102 37 1 5.8240 1.0573 4.8162 38 1 6.4025 -1.3484 5.0707 39 1 6.8604 -2.2152 3.5850 40 1 9.4891 -0.5088 2.6229 41 1 10.2545 -1.5021 3.8861 42 1 8.9925 -2.2036 2.8452 43 1 11.2622 1.3552 4.2140 44 1 4.7687 2.7301 0.8744 45 1 3.6451 3.3784 -0.3977 46 1 5.4376 2.7225 -1.9350 47 1 6.0581 1.4637 -0.7810 48 1 3.3517 1.4889 -2.3010 49 1 4.3525 0.0488 -1.8283 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755802566.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:35:20 Heat of formation + Delta-G solvation = -70.626073 kcal Electronic energy + Delta-G solvation = -28527.278087 eV Core-core repulsion = 24685.017012 eV Total energy + Delta-G solvation = -3842.261076 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.204 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.95089 -38.25069 -37.44637 -36.75289 -35.21480 -34.30955 -31.32601 -30.11098 -29.11319 -26.91360 -26.50586 -25.86945 -25.69293 -25.41130 -23.35034 -22.06391 -20.67894 -20.35379 -18.41420 -16.92444 -16.78582 -16.36737 -16.30808 -16.02547 -15.68893 -15.26731 -15.25462 -14.64638 -14.53065 -14.22487 -13.69103 -13.48192 -13.29851 -13.18712 -12.79375 -12.68562 -12.54220 -12.49868 -12.20713 -11.87795 -11.77340 -11.54507 -11.30154 -11.06807 -10.95489 -10.80731 -10.57248 -10.53600 -10.41131 -10.36959 -10.20028 -9.93603 -9.86612 -9.80585 -9.63145 -9.33756 -8.44739 -8.22472 -6.60833 -5.59212 -3.04501 2.83911 3.12560 3.44229 3.47782 3.49472 3.51502 4.23434 4.45508 4.57973 4.59346 4.71036 4.80013 4.98807 5.04230 5.09755 5.14014 5.20876 5.23411 5.28411 5.40241 5.43700 5.49166 5.51482 5.53389 5.60820 5.64323 5.79754 5.86953 5.91173 6.03675 6.06170 6.09276 6.11917 6.18123 6.31454 6.55149 6.71911 6.86123 6.89623 6.94498 7.45502 7.58615 7.83200 7.89819 8.41333 8.47483 8.55187 9.34503 9.97509 10.47382 11.46295 Molecular weight = 314.20amu Principal moments of inertia in cm(-1) A = 0.020940 B = 0.003419 C = 0.003336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.844374 B = 8187.530800 C = 8391.139891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.381 6.381 3 C 0.079 3.921 4 C -0.105 4.105 5 C 0.551 3.449 6 O -0.534 6.534 7 N -0.601 5.601 8 C 0.074 3.926 9 C 0.082 3.918 10 C 0.075 3.925 11 H 0.088 0.912 12 O -0.534 6.534 13 C 0.124 3.876 14 N -0.591 5.591 15 C 0.163 3.837 16 C -0.241 4.241 17 H 0.065 0.935 18 C 0.003 3.997 19 N -0.906 5.906 20 Si 0.903 3.097 21 H -0.291 1.291 22 H -0.293 1.293 23 H -0.281 1.281 24 C -0.128 4.128 25 C -0.141 4.141 26 C -0.115 4.115 27 H 0.039 0.961 28 H 0.040 0.960 29 H 0.085 0.915 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.046 0.954 33 H 0.079 0.921 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.086 0.914 37 H 0.356 0.644 38 H 0.045 0.955 39 H 0.045 0.955 40 H 0.030 0.970 41 H 0.042 0.958 42 H -0.004 1.004 43 H 0.250 0.750 44 H 0.086 0.914 45 H 0.091 0.909 46 H 0.073 0.927 47 H 0.086 0.914 48 H 0.084 0.916 49 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.545 3.240 -8.374 22.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.300 6.300 3 C 0.002 3.998 4 C -0.108 4.108 5 C 0.338 3.662 6 O -0.410 6.410 7 N -0.333 5.333 8 C -0.069 4.069 9 C -0.041 4.041 10 C 0.011 3.989 11 H 0.106 0.894 12 O -0.337 6.337 13 C -0.005 4.005 14 N -0.313 5.313 15 C 0.019 3.981 16 C -0.371 4.371 17 H 0.083 0.917 18 C -0.195 4.195 19 N -0.552 5.552 20 Si 0.734 3.266 21 H -0.218 1.218 22 H -0.219 1.219 23 H -0.207 1.207 24 C -0.165 4.165 25 C -0.178 4.178 26 C -0.152 4.152 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.104 0.896 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.065 0.935 33 H 0.097 0.903 34 H 0.093 0.907 35 H 0.091 0.909 36 H 0.105 0.895 37 H 0.201 0.799 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.048 0.952 41 H 0.060 0.940 42 H 0.015 0.985 43 H 0.060 0.940 44 H 0.104 0.896 45 H 0.109 0.891 46 H 0.091 0.909 47 H 0.105 0.895 48 H 0.103 0.897 49 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -19.665 2.777 -9.170 21.875 hybrid contribution -0.250 0.717 1.342 1.542 sum -19.915 3.494 -7.828 21.682 Atomic orbital electron populations 1.22734 0.81187 1.02824 0.99726 1.88013 1.19438 1.27245 1.95309 1.22571 0.91207 0.85328 1.00708 1.22011 0.93857 0.96929 0.97985 1.19507 0.78217 0.86445 0.82054 1.90662 1.46119 1.28052 1.76166 1.47575 1.55559 1.24455 1.05711 1.22033 0.96128 0.87795 1.00966 1.22426 0.95132 0.93562 0.93011 1.23159 0.91595 0.86835 0.97304 0.89441 1.86684 1.81676 1.31932 1.33380 1.21460 0.87314 0.94851 0.96905 1.43849 1.00021 1.60121 1.27316 1.20802 0.91228 0.93744 0.92362 1.19049 1.06739 1.19826 0.91444 0.91746 1.25001 0.99980 0.98144 0.96399 1.70070 1.19230 1.42466 1.23400 0.86281 0.78753 0.78507 0.83063 1.21810 1.21935 1.20670 1.23108 0.98063 0.94287 1.01068 1.22849 0.97594 0.99061 0.98302 1.22848 0.97369 1.01835 0.93165 0.94200 0.94145 0.89636 0.92524 0.92416 0.93545 0.90267 0.90726 0.90878 0.89525 0.79920 0.93684 0.93697 0.95200 0.93959 0.98513 0.94014 0.89597 0.89087 0.90862 0.89544 0.89702 0.89670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 101.05 1.11 1.37 16 2 O -0.38 -4.64 10.11 -35.23 -0.36 -4.99 16 3 C 0.08 0.79 5.06 37.16 0.19 0.98 16 4 C -0.10 -1.28 0.53 -154.85 -0.08 -1.36 16 5 C 0.55 8.88 5.80 -10.98 -0.06 8.81 16 6 O -0.53 -10.69 15.54 5.56 0.09 -10.61 16 7 N -0.60 -8.79 2.84 -181.57 -0.52 -9.30 16 8 C 0.07 0.82 8.61 59.85 0.52 1.33 16 9 C 0.08 1.27 5.08 -4.04 -0.02 1.25 16 10 C 0.07 1.43 3.48 -26.73 -0.09 1.34 16 11 H 0.09 2.02 8.14 -51.93 -0.42 1.59 16 12 O -0.53 -10.70 11.52 -35.23 -0.41 -11.11 16 13 C 0.12 2.55 5.43 -4.04 -0.02 2.53 16 14 N -0.59 -15.22 2.87 -181.12 -0.52 -15.74 16 15 C 0.16 4.26 9.01 59.85 0.54 4.80 16 16 C -0.24 -6.64 9.01 -15.06 -0.14 -6.78 16 17 H 0.06 1.72 7.85 -52.49 -0.41 1.30 16 18 C 0.00 0.08 5.13 -17.43 -0.09 -0.01 16 19 N -0.91 -27.32 10.65 55.49 0.59 -26.73 16 20 Si 0.90 22.30 29.57 -169.99 -5.03 17.27 16 21 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 22 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 23 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 24 C -0.13 -1.35 5.93 -25.92 -0.15 -1.51 16 25 C -0.14 -1.67 7.80 -25.92 -0.20 -1.87 16 26 C -0.11 -1.36 7.10 -25.92 -0.18 -1.54 16 27 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.49 5.98 -51.93 -0.31 0.18 16 31 H 0.06 0.46 7.89 -51.93 -0.41 0.05 16 32 H 0.05 0.43 7.43 -51.93 -0.39 0.05 16 33 H 0.08 0.86 7.20 -51.93 -0.37 0.49 16 34 H 0.07 0.75 4.11 -51.93 -0.21 0.53 16 35 H 0.07 0.94 8.07 -51.93 -0.42 0.52 16 36 H 0.09 1.44 7.37 -51.93 -0.38 1.06 16 37 H 0.36 5.93 9.04 45.56 0.41 6.34 16 38 H 0.04 0.86 8.03 -51.93 -0.42 0.44 16 39 H 0.04 0.88 7.86 -51.93 -0.41 0.47 16 40 H 0.03 0.85 7.34 -51.93 -0.38 0.47 16 41 H 0.04 1.16 7.32 -51.93 -0.38 0.78 16 42 H 0.00 -0.09 7.83 -51.93 -0.41 -0.49 16 43 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 44 H 0.09 1.03 6.43 -51.93 -0.33 0.70 16 45 H 0.09 0.71 8.10 -51.93 -0.42 0.29 16 46 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 47 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 48 H 0.08 0.79 7.93 -51.93 -0.41 0.38 16 49 H 0.08 1.21 7.36 -51.93 -0.38 0.83 16 LS Contribution 383.70 15.07 5.78 5.78 Total: -1.00 -35.33 383.70 -6.76 -42.10 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: -7.71 Total: 3.99 kcal Atomic # 6 Polarization: 8.03 SS G_CDS: 1.31 Total: 9.34 kcal Atomic # 7 Polarization: -51.33 SS G_CDS: -0.44 Total: -51.77 kcal Atomic # 8 Polarization: -26.03 SS G_CDS: -0.68 Total: -26.71 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.03 Total: 17.27 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -35.33 -6.76 -42.10 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755802566.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.528 kcal (2) G-P(sol) polarization free energy of solvation -35.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds