Wall clock time and date at job start Tue Mar 31 2020 10:35:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42903 * 113.99590 * 2 1 4 4 C 1.53002 * 109.46791 * 184.63094 * 3 2 1 5 5 C 1.50696 * 112.90653 * 313.48652 * 4 3 2 6 6 O 1.21278 * 120.00117 * 111.76520 * 5 4 3 7 7 N 1.34787 * 120.00237 * 291.75948 * 5 4 3 8 8 C 1.46508 * 119.99391 * 4.02729 * 7 5 4 9 9 C 1.46493 * 120.00027 * 184.02036 * 7 5 4 10 10 C 1.53003 * 109.46868 * 90.00719 * 9 7 5 11 11 H 1.08994 * 109.46828 * 304.99136 * 10 9 7 12 12 O 1.42898 * 109.47320 * 64.99865 * 10 9 7 13 13 C 1.53002 * 109.46864 * 184.99757 * 10 9 7 14 14 N 1.46496 * 109.47049 * 179.97438 * 13 10 9 15 15 C 1.46508 * 119.99736 * 269.99996 * 14 13 10 16 16 C 1.36936 * 120.00272 * 89.99828 * 14 13 10 17 17 H 1.07999 * 119.99946 * 23.17120 * 16 14 13 18 18 C 1.38814 * 120.00172 * 203.16613 * 16 14 13 19 19 N 1.31627 * 119.99674 * 11.76686 * 18 16 14 20 20 Si 1.86795 * 120.00021 * 191.75825 * 18 16 14 21 21 H 1.48502 * 109.47170 * 90.00844 * 20 18 16 22 22 H 1.48502 * 109.47086 * 210.00170 * 20 18 16 23 23 H 1.48501 * 109.47354 * 330.00263 * 20 18 16 24 24 C 1.53777 * 113.61417 * 182.23504 * 4 3 2 25 25 C 1.53781 * 87.08180 * 220.01875 * 24 4 3 26 26 C 1.53777 * 113.61381 * 84.73679 * 4 3 2 27 27 H 1.09004 * 109.47220 * 299.98999 * 1 2 3 28 28 H 1.08996 * 109.48022 * 59.99835 * 1 2 3 29 29 H 1.09003 * 109.47386 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46821 * 64.63169 * 3 2 1 31 31 H 1.09000 * 109.47166 * 304.63002 * 3 2 1 32 32 H 1.08997 * 109.47225 * 85.57935 * 8 7 5 33 33 H 1.09000 * 109.46540 * 205.58107 * 8 7 5 34 34 H 1.09003 * 109.46893 * 325.57231 * 8 7 5 35 35 H 1.09004 * 109.46826 * 210.00015 * 9 7 5 36 36 H 1.08997 * 109.47318 * 330.00474 * 9 7 5 37 37 H 0.96696 * 114.00050 * 59.99615 * 12 10 9 38 38 H 1.09000 * 109.47162 * 300.00010 * 13 10 9 39 39 H 1.09003 * 109.47318 * 59.99687 * 13 10 9 40 40 H 1.08994 * 109.47474 * 95.17426 * 15 14 13 41 41 H 1.09005 * 109.46767 * 215.17141 * 15 14 13 42 42 H 1.08995 * 109.47096 * 335.16987 * 15 14 13 43 43 H 0.96995 * 119.99498 * 179.97438 * 19 18 16 44 44 H 1.08999 * 113.61477 * 105.46610 * 24 4 3 45 45 H 1.09000 * 113.61572 * 334.56979 * 24 4 3 46 46 H 1.09000 * 113.61202 * 139.98139 * 25 24 4 47 47 H 1.09003 * 113.61027 * 270.88134 * 25 24 4 48 48 H 1.08999 * 113.61487 * 25.43632 * 26 4 3 49 49 H 1.08998 * 113.69115 * 254.53385 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5311 1.1867 -0.1165 5 6 4.1121 0.1561 0.8170 6 8 4.5966 -0.8620 0.3704 7 7 4.0933 0.3659 2.1483 8 6 3.4301 1.5531 2.6934 9 6 4.7360 -0.5931 3.0501 10 6 6.1964 -0.1909 3.2656 11 1 6.6946 -0.1009 2.3003 12 8 6.2493 1.0636 3.9478 13 6 6.9008 -1.2583 4.1054 14 7 8.2992 -0.8735 4.3112 15 6 9.3244 -1.2992 3.3551 16 6 8.6482 -0.1158 5.3972 17 1 8.0201 -0.1097 6.2757 18 6 9.8095 0.6442 5.3690 19 7 10.4510 0.8238 4.2337 20 14 10.4615 1.4122 6.9419 21 1 11.3933 0.4655 7.6058 22 1 11.1816 2.6697 6.6173 23 1 9.3280 1.7121 7.8533 24 6 4.2600 2.5399 -0.0707 25 6 5.1855 1.9895 -1.1686 26 6 4.0296 1.0561 -1.5653 27 1 -0.3634 0.5137 0.8901 28 1 -0.3635 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 1.7556 1.8165 0.9286 31 1 1.6244 1.8750 -0.8456 32 1 2.3678 1.3475 2.8253 33 1 3.8734 1.8070 3.6563 34 1 3.5558 2.3882 2.0042 35 1 4.2151 -0.5967 4.0076 36 1 4.6947 -1.5895 2.6102 37 1 5.8240 1.0573 4.8162 38 1 6.4025 -1.3484 5.0707 39 1 6.8604 -2.2152 3.5850 40 1 9.4891 -0.5088 2.6229 41 1 10.2545 -1.5021 3.8861 42 1 8.9925 -2.2036 2.8452 43 1 11.2622 1.3552 4.2140 44 1 4.7687 2.7301 0.8744 45 1 3.6451 3.3784 -0.3977 46 1 5.4376 2.7225 -1.9350 47 1 6.0581 1.4637 -0.7810 48 1 3.3517 1.4889 -2.3010 49 1 4.3525 0.0488 -1.8283 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755802566.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:35:19 Heat of formation + Delta-G solvation = -97.199479 kcal Electronic energy + Delta-G solvation = -28528.430396 eV Core-core repulsion = 24685.017012 eV Total energy + Delta-G solvation = -3843.413385 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.204 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.00068 -39.47079 -38.55036 -37.94814 -36.83439 -35.89267 -33.29453 -31.48702 -30.16538 -28.21760 -27.84088 -27.36188 -26.76051 -26.54736 -24.55289 -23.51680 -22.18817 -21.77807 -19.52009 -18.78674 -17.88069 -17.61385 -17.25768 -17.04836 -16.91386 -16.48995 -16.40219 -16.20070 -16.07936 -15.60178 -15.26524 -14.87836 -14.73264 -14.38381 -14.10783 -13.83470 -13.68131 -13.53947 -13.33659 -13.21496 -13.04963 -12.80535 -12.68716 -12.50225 -12.48947 -12.24694 -12.20184 -12.03589 -11.94925 -11.86859 -11.80158 -11.39730 -11.32385 -11.13910 -10.73060 -10.57504 -10.46795 -9.53155 -8.68981 -7.74603 -5.22473 1.48537 1.50199 1.58626 1.65416 2.03667 2.56091 2.75590 3.31492 3.40406 3.51703 3.57690 3.67746 3.80679 3.83853 3.93587 4.07168 4.21405 4.29757 4.33492 4.43351 4.49006 4.55212 4.55662 4.57850 4.61941 4.67725 4.72366 4.76120 4.79036 4.80334 4.87540 4.89525 4.94409 4.99351 5.10239 5.12135 5.23114 5.28152 5.38773 5.57766 5.64723 5.70276 6.24138 6.37357 6.45464 7.08938 7.20513 7.22703 7.90054 8.36868 9.30628 Molecular weight = 314.20amu Principal moments of inertia in cm(-1) A = 0.020940 B = 0.003419 C = 0.003336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.844374 B = 8187.530800 C = 8391.139891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.419 6.419 3 C 0.080 3.920 4 C -0.107 4.107 5 C 0.538 3.462 6 O -0.589 6.589 7 N -0.603 5.603 8 C 0.068 3.932 9 C 0.093 3.907 10 C 0.094 3.906 11 H 0.037 0.963 12 O -0.552 6.552 13 C 0.120 3.880 14 N -0.609 5.609 15 C 0.178 3.822 16 C -0.239 4.239 17 H 0.079 0.921 18 C -0.060 4.060 19 N -0.945 5.945 20 Si 0.970 3.030 21 H -0.291 1.291 22 H -0.303 1.303 23 H -0.261 1.261 24 C -0.112 4.112 25 C -0.148 4.148 26 C -0.113 4.113 27 H 0.054 0.946 28 H 0.057 0.943 29 H 0.084 0.916 30 H 0.076 0.924 31 H 0.087 0.913 32 H 0.072 0.928 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.110 0.890 36 H 0.072 0.928 37 H 0.373 0.627 38 H 0.071 0.929 39 H 0.054 0.946 40 H -0.005 1.005 41 H 0.019 0.981 42 H 0.022 0.978 43 H 0.242 0.758 44 H 0.069 0.931 45 H 0.134 0.866 46 H 0.097 0.903 47 H 0.042 0.958 48 H 0.119 0.881 49 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.858 4.885 -7.221 25.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.339 6.339 3 C 0.004 3.996 4 C -0.111 4.111 5 C 0.327 3.673 6 O -0.469 6.469 7 N -0.333 5.333 8 C -0.074 4.074 9 C -0.031 4.031 10 C 0.031 3.969 11 H 0.056 0.944 12 O -0.357 6.357 13 C -0.007 4.007 14 N -0.331 5.331 15 C 0.033 3.967 16 C -0.369 4.369 17 H 0.097 0.903 18 C -0.253 4.253 19 N -0.593 5.593 20 Si 0.799 3.201 21 H -0.218 1.218 22 H -0.230 1.230 23 H -0.186 1.186 24 C -0.149 4.149 25 C -0.186 4.186 26 C -0.150 4.150 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.103 0.897 30 H 0.094 0.906 31 H 0.105 0.895 32 H 0.090 0.910 33 H 0.101 0.899 34 H 0.105 0.895 35 H 0.128 0.872 36 H 0.090 0.910 37 H 0.220 0.780 38 H 0.089 0.911 39 H 0.072 0.928 40 H 0.013 0.987 41 H 0.038 0.962 42 H 0.041 0.959 43 H 0.051 0.949 44 H 0.088 0.912 45 H 0.152 0.848 46 H 0.115 0.885 47 H 0.061 0.939 48 H 0.138 0.862 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -23.052 4.434 -7.975 24.793 hybrid contribution 0.726 0.138 0.960 1.211 sum -22.327 4.571 -7.015 23.845 Atomic orbital electron populations 1.22895 0.79313 1.03390 1.01252 1.87973 1.21617 1.28649 1.95642 1.22676 0.88968 0.85070 1.02936 1.22030 0.95855 0.96395 0.96774 1.20346 0.77415 0.86627 0.82928 1.90626 1.48537 1.30554 1.77188 1.47706 1.55009 1.25236 1.05382 1.22289 0.97212 0.86645 1.01227 1.22165 0.92970 0.93092 0.94851 1.22678 0.93618 0.86053 0.94595 0.94430 1.86643 1.82307 1.32152 1.34644 1.21661 0.85030 0.95460 0.98590 1.44079 1.02020 1.60050 1.26936 1.20496 0.91001 0.93593 0.91617 1.19458 1.06525 1.18631 0.92261 0.90350 1.25823 1.00748 0.99485 0.99294 1.70282 1.19548 1.43867 1.25624 0.85214 0.78339 0.76904 0.79634 1.21814 1.22978 1.18577 1.23127 0.97500 0.94618 0.99667 1.22811 0.96489 0.99539 0.99726 1.22905 0.97925 1.00081 0.94116 0.92722 0.92460 0.89728 0.90644 0.89537 0.90982 0.89860 0.89548 0.87185 0.90956 0.77962 0.91078 0.92814 0.98698 0.96227 0.95915 0.94893 0.91213 0.84762 0.88490 0.93940 0.86232 0.93201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 11.01 113.37 1.25 1.62 16 2 O -0.42 -9.33 10.11 -148.98 -1.51 -10.84 16 3 C 0.08 1.34 5.06 71.98 0.36 1.70 16 4 C -0.11 -2.48 0.53 -52.40 -0.03 -2.51 16 5 C 0.54 17.58 5.80 87.65 0.51 18.09 16 6 O -0.59 -25.05 15.54 -3.02 -0.05 -25.09 16 7 N -0.60 -17.11 2.84 -846.74 -2.40 -19.51 16 8 C 0.07 1.31 8.61 127.77 1.10 2.41 16 9 C 0.09 2.81 5.08 86.38 0.44 3.25 16 10 C 0.09 3.63 3.48 30.60 0.11 3.74 16 11 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 12 O -0.55 -21.75 11.52 -148.98 -1.72 -23.47 16 13 C 0.12 4.87 5.43 86.38 0.47 5.34 16 14 N -0.61 -31.57 2.87 -726.92 -2.09 -33.65 16 15 C 0.18 9.65 9.01 127.77 1.15 10.80 16 16 C -0.24 -13.06 9.01 84.03 0.76 -12.30 16 17 H 0.08 4.01 7.85 -2.91 -0.02 3.99 16 18 C -0.06 -3.43 5.13 84.86 0.44 -2.99 16 19 N -0.95 -58.91 10.65 21.65 0.23 -58.68 16 20 Si 0.97 46.03 29.57 68.60 2.03 48.05 16 21 H -0.29 -13.68 7.11 99.48 0.71 -12.98 16 22 H -0.30 -14.72 7.11 99.48 0.71 -14.02 16 23 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 24 C -0.11 -2.14 5.93 31.12 0.18 -1.95 16 25 C -0.15 -3.51 7.80 31.12 0.24 -3.27 16 26 C -0.11 -2.62 7.10 31.12 0.22 -2.40 16 27 H 0.05 0.56 8.14 -2.38 -0.02 0.54 16 28 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.08 0.96 5.98 -2.39 -0.01 0.94 16 31 H 0.09 0.96 7.89 -2.39 -0.02 0.94 16 32 H 0.07 1.05 7.43 -2.39 -0.02 1.04 16 33 H 0.08 1.55 7.20 -2.39 -0.02 1.54 16 34 H 0.09 1.47 4.11 -2.39 -0.01 1.46 16 35 H 0.11 2.51 8.07 -2.39 -0.02 2.49 16 36 H 0.07 2.42 7.37 -2.39 -0.02 2.40 16 37 H 0.37 11.60 9.04 -74.06 -0.67 10.93 16 38 H 0.07 2.54 8.03 -2.39 -0.02 2.52 16 39 H 0.05 2.08 7.86 -2.39 -0.02 2.06 16 40 H -0.01 -0.32 7.34 -2.39 -0.02 -0.34 16 41 H 0.02 1.10 7.32 -2.38 -0.02 1.09 16 42 H 0.02 1.07 7.83 -2.39 -0.02 1.05 16 43 H 0.24 14.76 8.31 -92.71 -0.77 13.99 16 44 H 0.07 1.58 6.43 -2.39 -0.02 1.57 16 45 H 0.13 1.44 8.10 -2.39 -0.02 1.42 16 46 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 47 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 48 H 0.12 1.91 7.93 -2.39 -0.02 1.89 16 49 H 0.05 1.51 7.36 -2.39 -0.02 1.49 16 Total: -1.00 -81.81 383.70 1.96 -79.85 By element: Atomic # 1 Polarization: 21.57 SS G_CDS: 0.26 Total: 21.84 kcal Atomic # 6 Polarization: 14.30 SS G_CDS: 7.20 Total: 21.50 kcal Atomic # 7 Polarization: -107.59 SS G_CDS: -4.26 Total: -111.85 kcal Atomic # 8 Polarization: -56.13 SS G_CDS: -3.27 Total: -59.40 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 2.03 Total: 48.05 kcal Total: -81.81 1.96 -79.85 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755802566.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.348 kcal (2) G-P(sol) polarization free energy of solvation -81.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds