Wall clock time and date at job start Tue Mar 31 2020 10:38:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42901 * 114.00215 * 2 1 4 4 C 1.52994 * 109.47377 * 179.97438 * 3 2 1 5 5 N 1.46503 * 109.46930 * 61.26026 * 4 3 2 6 6 C 1.36942 * 119.99553 * 263.53709 * 5 4 3 7 7 H 1.08000 * 119.99477 * 173.21942 * 6 5 4 8 8 C 1.38811 * 120.00337 * 353.22269 * 6 5 4 9 9 N 1.31625 * 119.99784 * 38.53483 * 8 6 5 10 10 Si 1.86793 * 120.00375 * 218.53322 * 8 6 5 11 11 H 1.48507 * 109.46692 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.47505 * 119.99755 * 10 8 6 13 13 H 1.48500 * 109.47581 * 240.00093 * 10 8 6 14 14 C 1.46490 * 120.00151 * 83.53846 * 5 4 3 15 15 C 1.53001 * 109.47255 * 86.72901 * 14 5 4 16 16 N 1.46505 * 109.47426 * 184.49472 * 15 14 5 17 17 C 1.34773 * 119.99840 * 179.97438 * 16 15 14 18 18 O 1.21282 * 120.00643 * 0.02562 * 17 16 15 19 19 C 1.50700 * 119.99766 * 180.02562 * 17 16 15 20 20 H 1.09004 * 108.96016 * 301.20077 * 19 17 16 21 21 C 1.54201 * 108.97869 * 182.48209 * 19 17 16 22 22 C 1.50619 * 109.06486 * 161.82639 * 21 19 17 23 23 C 1.53822 * 112.46862 * 90.32685 * 22 21 19 24 24 O 1.43992 * 113.41052 * 317.88309 * 23 22 21 25 25 C 1.40316 * 116.58273 * 317.89577 * 24 23 22 26 26 C 1.46291 * 108.97886 * 59.99906 * 19 17 16 27 27 H 1.09002 * 109.46974 * 59.99992 * 1 2 3 28 28 H 1.08998 * 109.46933 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47060 * 299.99839 * 1 2 3 30 30 H 1.09002 * 109.46954 * 59.99781 * 3 2 1 31 31 H 1.08998 * 109.46796 * 300.00457 * 3 2 1 32 32 H 1.08999 * 109.47672 * 301.25838 * 4 3 2 33 33 H 1.09002 * 109.47085 * 181.25310 * 4 3 2 34 34 H 0.97000 * 119.99552 * 180.02562 * 9 8 6 35 35 H 1.09002 * 109.47198 * 206.72285 * 14 5 4 36 36 H 1.08999 * 109.47442 * 326.72497 * 14 5 4 37 37 H 1.08997 * 109.47288 * 304.49614 * 15 14 5 38 38 H 1.09005 * 109.47500 * 64.49590 * 15 14 5 39 39 H 0.96996 * 119.99586 * 0.02562 * 16 15 14 40 40 H 1.09001 * 109.53444 * 281.69731 * 21 19 17 41 41 H 1.08993 * 109.54303 * 41.94684 * 21 19 17 42 42 H 1.08996 * 108.88600 * 329.55651 * 22 21 19 43 43 H 1.09007 * 108.80378 * 211.04061 * 22 21 19 44 44 H 1.08999 * 108.69330 * 196.86843 * 23 22 21 45 45 H 1.08995 * 108.69532 * 78.90057 * 23 22 21 46 46 H 1.09005 * 109.60156 * 335.27051 * 25 24 23 47 47 H 1.09005 * 109.59750 * 214.80768 * 25 24 23 48 48 H 1.09000 * 108.93297 * 302.76666 * 26 19 17 49 49 H 1.08997 * 108.93444 * 61.36005 * 26 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9703 0.4838 -1.2102 6 6 4.2188 -0.8623 -1.1701 7 1 4.4324 -1.3993 -2.0825 8 6 4.1961 -1.5365 0.0430 9 7 3.2972 -1.2246 0.9526 10 14 5.4411 -2.8865 0.3848 11 1 6.3359 -3.0435 -0.7900 12 1 6.2483 -2.5251 1.5777 13 1 4.7286 -4.1646 0.6381 14 6 4.1392 1.2229 -2.4636 15 6 5.5494 1.8135 -2.5213 16 7 5.6836 2.6411 -3.7228 17 6 6.8484 3.2669 -3.9834 18 8 7.7858 3.1446 -3.2236 19 6 6.9862 4.1186 -5.2189 20 1 6.7902 3.5032 -6.0970 21 6 8.4288 4.6574 -5.2983 22 6 8.7055 5.1172 -6.7057 23 6 8.3537 6.5992 -6.9198 24 8 7.1127 6.9877 -6.3015 25 6 6.0424 6.0884 -6.4223 26 6 6.0004 5.1981 -5.1650 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.6886 1.8464 0.8900 31 1 1.6886 1.8463 -0.8899 32 1 3.8553 0.6246 0.8793 33 1 3.9787 2.1802 0.0231 34 1 3.2816 -1.6956 1.8004 35 1 3.9936 0.5471 -3.3064 36 1 3.4059 2.0279 -2.5125 37 1 5.7232 2.4263 -1.6368 38 1 6.2807 1.0058 -2.5531 39 1 4.9338 2.7391 -4.3303 40 1 8.5429 5.4962 -4.6117 41 1 9.1288 3.8665 -5.0290 42 1 8.1185 4.5119 -7.3964 43 1 9.7641 4.9712 -6.9213 44 1 8.2856 6.7909 -7.9907 45 1 9.1559 7.2117 -6.5083 46 1 6.1853 5.4664 -7.3060 47 1 5.1076 6.6421 -6.5096 48 1 5.0050 4.7638 -5.0721 49 1 6.1987 5.8146 -4.2883 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755838030.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:38:25 Heat of formation + Delta-G solvation = -90.944837 kcal Electronic energy + Delta-G solvation = -27269.001955 eV Core-core repulsion = 23425.859792 eV Total energy + Delta-G solvation = -3843.142163 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.204 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.43723 -38.72716 -36.99431 -35.65782 -34.84875 -34.20313 -32.84473 -31.32764 -29.33785 -27.83686 -27.05039 -25.93361 -25.29231 -23.63026 -22.33974 -21.68068 -20.83927 -20.16175 -19.62537 -17.60604 -16.82523 -16.75358 -16.05047 -15.74147 -15.51888 -15.31376 -14.95280 -14.59615 -14.36789 -14.09067 -13.89242 -13.72640 -13.55021 -13.38924 -13.25848 -12.89220 -12.52328 -12.46169 -11.97999 -11.74994 -11.53204 -11.42863 -11.16090 -11.01385 -10.88420 -10.84912 -10.70616 -10.69784 -10.54442 -10.33772 -10.11562 -10.00111 -9.81002 -9.45572 -9.36036 -8.68396 -8.34205 -8.04559 -6.95149 -5.70036 -2.86051 2.84951 3.38023 3.49883 3.54856 3.60412 3.64206 4.29918 4.49566 4.59106 4.65891 4.72068 4.74973 4.95948 5.07142 5.15639 5.20593 5.28923 5.31177 5.36104 5.44670 5.55586 5.64994 5.70296 5.74398 5.81416 5.88424 5.91514 6.04699 6.06873 6.09762 6.16453 6.20555 6.32348 6.43734 6.47382 6.61716 6.65656 6.75669 6.82251 6.95682 7.09000 7.67261 7.76279 7.94156 8.34109 8.47067 8.64181 9.24141 9.94992 10.38445 11.30282 Molecular weight = 314.20amu Principal moments of inertia in cm(-1) A = 0.018764 B = 0.002827 C = 0.002533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.823530 B = 9903.412476 C =11051.927778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.293 6.293 3 C 0.060 3.940 4 C 0.146 3.854 5 N -0.583 5.583 6 C -0.274 4.274 7 H 0.075 0.925 8 C 0.023 3.977 9 N -0.831 5.831 10 Si 0.855 3.145 11 H -0.280 1.280 12 H -0.290 1.290 13 H -0.296 1.296 14 C 0.149 3.851 15 C 0.094 3.906 16 N -0.725 5.725 17 C 0.510 3.490 18 O -0.542 6.542 19 C -0.104 4.104 20 H 0.090 0.910 21 C -0.099 4.099 22 C -0.155 4.155 23 C 0.062 3.938 24 O -0.384 6.384 25 C 0.071 3.929 26 C -0.146 4.146 27 H 0.014 0.986 28 H 0.069 0.931 29 H 0.017 0.983 30 H 0.016 0.984 31 H 0.008 0.992 32 H 0.114 0.886 33 H 0.023 0.977 34 H 0.247 0.753 35 H 0.051 0.949 36 H 0.036 0.964 37 H 0.059 0.941 38 H 0.067 0.933 39 H 0.395 0.605 40 H 0.074 0.926 41 H 0.079 0.921 42 H 0.064 0.936 43 H 0.077 0.923 44 H 0.049 0.951 45 H 0.087 0.913 46 H 0.053 0.947 47 H 0.088 0.912 48 H 0.075 0.925 49 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.422 14.322 -14.701 20.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.208 6.208 3 C -0.020 4.020 4 C 0.020 3.980 5 N -0.304 5.304 6 C -0.401 4.401 7 H 0.092 0.908 8 C -0.177 4.177 9 N -0.472 5.472 10 Si 0.683 3.317 11 H -0.206 1.206 12 H -0.217 1.217 13 H -0.224 1.224 14 C 0.020 3.980 15 C -0.032 4.032 16 N -0.376 5.376 17 C 0.295 3.705 18 O -0.419 6.419 19 C -0.125 4.125 20 H 0.108 0.892 21 C -0.137 4.137 22 C -0.192 4.192 23 C -0.014 4.014 24 O -0.303 6.303 25 C -0.006 4.006 26 C -0.184 4.184 27 H 0.032 0.968 28 H 0.087 0.913 29 H 0.036 0.964 30 H 0.034 0.966 31 H 0.026 0.974 32 H 0.131 0.869 33 H 0.041 0.959 34 H 0.058 0.942 35 H 0.070 0.930 36 H 0.054 0.946 37 H 0.078 0.922 38 H 0.086 0.914 39 H 0.228 0.772 40 H 0.093 0.907 41 H 0.098 0.902 42 H 0.083 0.917 43 H 0.096 0.904 44 H 0.067 0.933 45 H 0.105 0.895 46 H 0.072 0.928 47 H 0.106 0.894 48 H 0.093 0.907 49 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 3.123 14.112 -13.849 20.018 hybrid contribution -0.107 -0.820 -0.194 0.850 sum 3.017 13.292 -14.044 19.570 Atomic orbital electron populations 1.22606 0.86856 1.00748 0.97109 1.88772 1.13476 1.24417 1.94163 1.22909 0.98413 0.85382 0.95273 1.21461 0.89421 0.93971 0.93170 1.43863 1.77111 1.05237 1.04213 1.18931 1.43849 0.84064 0.93249 0.90754 1.24675 0.98059 0.97621 0.97363 1.70508 1.27439 1.41437 1.07781 0.86943 0.84471 0.82164 0.78078 1.20568 1.21679 1.22356 1.20742 0.91865 0.94847 0.90559 1.22440 1.01766 0.93578 0.85396 1.46146 1.14143 1.50122 1.27175 1.20603 0.82756 0.79969 0.87201 1.90695 1.38849 1.62795 1.49528 1.20436 0.97883 0.96989 0.97199 0.89168 1.21148 0.94564 1.01863 0.96119 1.21968 1.02698 0.96483 0.98095 1.22965 0.86244 0.95311 0.96856 1.87472 1.19573 1.45165 1.78064 1.22301 0.90156 0.92036 0.96106 1.21152 0.98904 0.97455 1.00936 0.96763 0.91250 0.96423 0.96607 0.97359 0.86857 0.95863 0.94213 0.93048 0.94615 0.92249 0.91420 0.77216 0.90702 0.90208 0.91690 0.90407 0.93283 0.89495 0.92840 0.89427 0.90680 0.90339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 11.01 101.05 1.11 1.59 16 2 O -0.29 -7.02 7.72 -35.23 -0.27 -7.29 16 3 C 0.06 1.30 6.26 37.15 0.23 1.53 16 4 C 0.15 3.36 5.58 -4.04 -0.02 3.33 16 5 N -0.58 -13.82 2.45 -173.25 -0.42 -14.24 16 6 C -0.27 -7.32 9.36 -15.06 -0.14 -7.46 16 7 H 0.07 2.00 8.01 -52.49 -0.42 1.58 16 8 C 0.02 0.64 4.82 -17.43 -0.08 0.56 16 9 N -0.83 -22.93 8.17 55.49 0.45 -22.47 16 10 Si 0.86 21.32 29.68 -169.99 -5.05 16.28 16 11 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 12 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 13 H -0.30 -7.49 7.11 56.52 0.40 -7.09 16 14 C 0.15 2.82 5.80 -4.05 -0.02 2.79 16 15 C 0.09 1.70 6.00 -4.04 -0.02 1.67 16 16 N -0.72 -10.17 5.39 -60.29 -0.33 -10.50 16 17 C 0.51 7.52 7.08 -10.99 -0.08 7.44 16 18 O -0.54 -10.44 15.63 5.56 0.09 -10.35 16 19 C -0.10 -1.08 2.09 -94.33 -0.20 -1.27 16 20 H 0.09 0.78 7.59 -51.93 -0.39 0.38 16 21 C -0.10 -1.04 4.51 -27.29 -0.12 -1.16 16 22 C -0.15 -1.17 5.32 -27.49 -0.15 -1.32 16 23 C 0.06 0.47 6.67 37.59 0.25 0.72 16 24 O -0.38 -3.72 10.17 -33.67 -0.34 -4.06 16 25 C 0.07 0.56 6.38 37.74 0.24 0.80 16 26 C -0.15 -1.32 4.62 -29.34 -0.14 -1.46 16 27 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 28 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 29 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.01 0.17 8.03 -51.93 -0.42 -0.25 16 32 H 0.11 2.97 5.26 -51.93 -0.27 2.69 16 33 H 0.02 0.49 8.12 -51.93 -0.42 0.06 16 34 H 0.25 6.71 8.31 -40.82 -0.34 6.37 16 35 H 0.05 0.96 7.98 -51.93 -0.41 0.55 16 36 H 0.04 0.62 7.98 -51.93 -0.41 0.20 16 37 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 39 H 0.39 4.26 7.70 -40.82 -0.31 3.95 16 40 H 0.07 0.88 7.82 -51.93 -0.41 0.47 16 41 H 0.08 0.96 7.46 -51.93 -0.39 0.58 16 42 H 0.06 0.44 6.83 -51.93 -0.35 0.09 16 43 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 44 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 45 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.05 0.35 6.98 -51.93 -0.36 -0.02 16 47 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 48 H 0.07 0.57 7.24 -51.93 -0.38 0.20 16 49 H 0.08 0.86 8.13 -51.93 -0.42 0.43 16 LS Contribution 380.90 15.07 5.74 5.74 Total: -1.00 -32.03 380.90 -8.01 -40.04 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: -8.74 Total: -0.90 kcal Atomic # 6 Polarization: 6.90 SS G_CDS: 0.86 Total: 7.76 kcal Atomic # 7 Polarization: -46.92 SS G_CDS: -0.30 Total: -47.21 kcal Atomic # 8 Polarization: -21.18 SS G_CDS: -0.53 Total: -21.70 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.05 Total: 16.28 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -32.03 -8.01 -40.04 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755838030.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.905 kcal (2) G-P(sol) polarization free energy of solvation -32.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds