Wall clock time and date at job start Tue Mar 31 2020 10:38:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42901 * 114.00215 * 2 1 4 4 C 1.52994 * 109.47377 * 179.97438 * 3 2 1 5 5 N 1.46503 * 109.46930 * 61.26026 * 4 3 2 6 6 C 1.36942 * 119.99553 * 263.53709 * 5 4 3 7 7 H 1.08000 * 119.99477 * 173.21942 * 6 5 4 8 8 C 1.38811 * 120.00337 * 353.22269 * 6 5 4 9 9 N 1.31625 * 119.99784 * 38.53483 * 8 6 5 10 10 Si 1.86793 * 120.00375 * 218.53322 * 8 6 5 11 11 H 1.48507 * 109.46692 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.47505 * 119.99755 * 10 8 6 13 13 H 1.48500 * 109.47581 * 240.00093 * 10 8 6 14 14 C 1.46490 * 120.00151 * 83.53846 * 5 4 3 15 15 C 1.53001 * 109.47255 * 86.72901 * 14 5 4 16 16 N 1.46505 * 109.47426 * 184.49472 * 15 14 5 17 17 C 1.34773 * 119.99840 * 179.97438 * 16 15 14 18 18 O 1.21282 * 120.00643 * 0.02562 * 17 16 15 19 19 C 1.50700 * 119.99766 * 180.02562 * 17 16 15 20 20 H 1.09004 * 108.96016 * 301.20077 * 19 17 16 21 21 C 1.54201 * 108.97869 * 182.48209 * 19 17 16 22 22 C 1.50619 * 109.06486 * 161.82639 * 21 19 17 23 23 C 1.53822 * 112.46862 * 90.32685 * 22 21 19 24 24 O 1.43992 * 113.41052 * 317.88309 * 23 22 21 25 25 C 1.40316 * 116.58273 * 317.89577 * 24 23 22 26 26 C 1.46291 * 108.97886 * 59.99906 * 19 17 16 27 27 H 1.09002 * 109.46974 * 59.99992 * 1 2 3 28 28 H 1.08998 * 109.46933 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47060 * 299.99839 * 1 2 3 30 30 H 1.09002 * 109.46954 * 59.99781 * 3 2 1 31 31 H 1.08998 * 109.46796 * 300.00457 * 3 2 1 32 32 H 1.08999 * 109.47672 * 301.25838 * 4 3 2 33 33 H 1.09002 * 109.47085 * 181.25310 * 4 3 2 34 34 H 0.97000 * 119.99552 * 180.02562 * 9 8 6 35 35 H 1.09002 * 109.47198 * 206.72285 * 14 5 4 36 36 H 1.08999 * 109.47442 * 326.72497 * 14 5 4 37 37 H 1.08997 * 109.47288 * 304.49614 * 15 14 5 38 38 H 1.09005 * 109.47500 * 64.49590 * 15 14 5 39 39 H 0.96996 * 119.99586 * 0.02562 * 16 15 14 40 40 H 1.09001 * 109.53444 * 281.69731 * 21 19 17 41 41 H 1.08993 * 109.54303 * 41.94684 * 21 19 17 42 42 H 1.08996 * 108.88600 * 329.55651 * 22 21 19 43 43 H 1.09007 * 108.80378 * 211.04061 * 22 21 19 44 44 H 1.08999 * 108.69330 * 196.86843 * 23 22 21 45 45 H 1.08995 * 108.69532 * 78.90057 * 23 22 21 46 46 H 1.09005 * 109.60156 * 335.27051 * 25 24 23 47 47 H 1.09005 * 109.59750 * 214.80768 * 25 24 23 48 48 H 1.09000 * 108.93297 * 302.76666 * 26 19 17 49 49 H 1.08997 * 108.93444 * 61.36005 * 26 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9703 0.4838 -1.2102 6 6 4.2188 -0.8623 -1.1701 7 1 4.4324 -1.3993 -2.0825 8 6 4.1961 -1.5365 0.0430 9 7 3.2972 -1.2246 0.9526 10 14 5.4411 -2.8865 0.3848 11 1 6.3359 -3.0435 -0.7900 12 1 6.2483 -2.5251 1.5777 13 1 4.7286 -4.1646 0.6381 14 6 4.1392 1.2229 -2.4636 15 6 5.5494 1.8135 -2.5213 16 7 5.6836 2.6411 -3.7228 17 6 6.8484 3.2669 -3.9834 18 8 7.7858 3.1446 -3.2236 19 6 6.9862 4.1186 -5.2189 20 1 6.7902 3.5032 -6.0970 21 6 8.4288 4.6574 -5.2983 22 6 8.7055 5.1172 -6.7057 23 6 8.3537 6.5992 -6.9198 24 8 7.1127 6.9877 -6.3015 25 6 6.0424 6.0884 -6.4223 26 6 6.0004 5.1981 -5.1650 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.6886 1.8464 0.8900 31 1 1.6886 1.8463 -0.8899 32 1 3.8553 0.6246 0.8793 33 1 3.9787 2.1802 0.0231 34 1 3.2816 -1.6956 1.8004 35 1 3.9936 0.5471 -3.3064 36 1 3.4059 2.0279 -2.5125 37 1 5.7232 2.4263 -1.6368 38 1 6.2807 1.0058 -2.5531 39 1 4.9338 2.7391 -4.3303 40 1 8.5429 5.4962 -4.6117 41 1 9.1288 3.8665 -5.0290 42 1 8.1185 4.5119 -7.3964 43 1 9.7641 4.9712 -6.9213 44 1 8.2856 6.7909 -7.9907 45 1 9.1559 7.2117 -6.5083 46 1 6.1853 5.4664 -7.3060 47 1 5.1076 6.6421 -6.5096 48 1 5.0050 4.7638 -5.0721 49 1 6.1987 5.8146 -4.2883 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755838030.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:38:24 Heat of formation + Delta-G solvation = -112.500154 kcal Electronic energy + Delta-G solvation = -27269.936664 eV Core-core repulsion = 23425.859792 eV Total energy + Delta-G solvation = -3844.076872 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.204 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.42917 -39.64940 -38.69715 -37.26607 -35.74039 -35.69866 -33.64246 -33.11270 -30.93651 -29.27287 -28.00971 -26.91596 -26.75991 -25.32294 -23.85545 -22.70592 -21.75052 -21.53299 -20.83941 -18.80454 -18.46191 -17.54011 -17.31053 -16.89960 -16.72006 -16.46824 -16.26734 -16.17714 -15.95347 -15.45483 -15.36275 -15.02699 -14.79701 -14.59796 -14.44581 -14.02805 -13.76927 -13.67337 -13.22165 -13.07157 -13.02289 -12.74067 -12.44791 -12.40052 -12.29445 -12.26897 -12.12835 -11.88664 -11.78205 -11.74512 -11.58007 -11.33242 -11.25711 -10.92076 -10.28770 -10.13712 -10.03127 -9.89999 -8.85569 -7.74334 -4.88432 1.46156 1.55632 1.61357 1.66479 2.18827 2.63903 2.98403 3.24799 3.51276 3.54910 3.67018 3.83603 3.92758 4.01178 4.13486 4.25320 4.30657 4.34328 4.49087 4.53678 4.58054 4.59680 4.62568 4.65621 4.68400 4.75102 4.78713 4.85479 4.92736 4.99198 5.02862 5.06739 5.09808 5.10726 5.13200 5.17195 5.26957 5.29913 5.37001 5.51530 5.79215 5.85402 6.39076 6.52640 6.61732 7.01213 7.26404 7.31258 8.01411 8.41592 9.23715 Molecular weight = 314.20amu Principal moments of inertia in cm(-1) A = 0.018764 B = 0.002827 C = 0.002533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.823530 B = 9903.412476 C =11051.927778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.335 6.335 3 C 0.065 3.935 4 C 0.144 3.856 5 N -0.599 5.599 6 C -0.276 4.276 7 H 0.067 0.933 8 C -0.015 4.015 9 N -0.842 5.842 10 Si 0.901 3.099 11 H -0.282 1.282 12 H -0.297 1.297 13 H -0.300 1.300 14 C 0.154 3.846 15 C 0.114 3.886 16 N -0.711 5.711 17 C 0.505 3.495 18 O -0.593 6.593 19 C -0.091 4.091 20 H 0.120 0.880 21 C -0.099 4.099 22 C -0.148 4.148 23 C 0.059 3.941 24 O -0.408 6.408 25 C 0.071 3.929 26 C -0.144 4.144 27 H 0.032 0.968 28 H 0.070 0.930 29 H 0.032 0.968 30 H 0.028 0.972 31 H 0.025 0.975 32 H 0.080 0.920 33 H 0.042 0.958 34 H 0.241 0.759 35 H 0.056 0.944 36 H 0.062 0.938 37 H 0.039 0.961 38 H 0.036 0.964 39 H 0.415 0.585 40 H 0.054 0.946 41 H 0.057 0.943 42 H 0.081 0.919 43 H 0.088 0.912 44 H 0.069 0.931 45 H 0.086 0.914 46 H 0.074 0.926 47 H 0.102 0.898 48 H 0.093 0.907 49 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.394 15.606 -17.224 23.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.252 6.252 3 C -0.014 4.014 4 C 0.019 3.981 5 N -0.320 5.320 6 C -0.405 4.405 7 H 0.084 0.916 8 C -0.215 4.215 9 N -0.484 5.484 10 Si 0.731 3.269 11 H -0.208 1.208 12 H -0.225 1.225 13 H -0.228 1.228 14 C 0.027 3.973 15 C -0.013 4.013 16 N -0.363 5.363 17 C 0.292 3.708 18 O -0.473 6.473 19 C -0.112 4.112 20 H 0.138 0.862 21 C -0.137 4.137 22 C -0.186 4.186 23 C -0.017 4.017 24 O -0.327 6.327 25 C -0.005 4.005 26 C -0.182 4.182 27 H 0.051 0.949 28 H 0.088 0.912 29 H 0.051 0.949 30 H 0.047 0.953 31 H 0.043 0.957 32 H 0.098 0.902 33 H 0.060 0.940 34 H 0.051 0.949 35 H 0.075 0.925 36 H 0.080 0.920 37 H 0.058 0.942 38 H 0.054 0.946 39 H 0.252 0.748 40 H 0.073 0.927 41 H 0.076 0.924 42 H 0.099 0.901 43 H 0.107 0.893 44 H 0.087 0.913 45 H 0.105 0.895 46 H 0.092 0.908 47 H 0.120 0.880 48 H 0.112 0.888 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.070 15.422 -16.421 22.622 hybrid contribution 0.221 -1.182 0.570 1.331 sum 2.290 14.240 -15.851 21.431 Atomic orbital electron populations 1.22713 0.84632 1.01400 0.98670 1.88688 1.16116 1.25819 1.94532 1.22819 0.97048 0.84991 0.96556 1.21335 0.90933 0.94070 0.91805 1.43979 1.77549 1.04580 1.05907 1.19042 1.43024 0.85553 0.92843 0.91556 1.25082 0.99151 0.99419 0.97822 1.70636 1.27969 1.42160 1.07626 0.86233 0.82916 0.80505 0.77282 1.20795 1.22475 1.22816 1.20824 0.92493 0.95228 0.88793 1.21901 1.00325 0.92730 0.86392 1.45918 1.15002 1.49159 1.26237 1.21481 0.81805 0.79523 0.87957 1.90677 1.40600 1.64512 1.51556 1.20475 0.98274 0.96983 0.95511 0.86192 1.21111 0.94289 1.00422 0.97847 1.21915 1.03811 0.96837 0.96016 1.23081 0.85679 0.95028 0.97901 1.87452 1.20527 1.46106 1.78601 1.22412 0.90330 0.92024 0.95779 1.21163 0.99200 0.96861 1.00998 0.94917 0.91180 0.94921 0.95345 0.95706 0.90212 0.94035 0.94903 0.92548 0.91974 0.94209 0.94581 0.74825 0.92723 0.92399 0.90054 0.89304 0.91269 0.89530 0.90783 0.87974 0.88824 0.92793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.85 11.01 113.37 1.25 2.10 16 2 O -0.33 -15.72 7.72 -148.98 -1.15 -16.87 16 3 C 0.07 2.72 6.26 71.98 0.45 3.17 16 4 C 0.14 6.59 5.58 86.38 0.48 7.07 16 5 N -0.60 -28.08 2.45 -702.03 -1.72 -29.80 16 6 C -0.28 -14.83 9.36 84.03 0.79 -14.05 16 7 H 0.07 3.59 8.01 -2.91 -0.02 3.57 16 8 C -0.02 -0.85 4.82 84.86 0.41 -0.44 16 9 N -0.84 -47.04 8.17 21.65 0.18 -46.87 16 10 Si 0.90 44.78 29.68 68.60 2.04 46.81 16 11 H -0.28 -13.97 7.11 99.48 0.71 -13.26 16 12 H -0.30 -15.00 7.11 99.48 0.71 -14.29 16 13 H -0.30 -15.00 7.11 99.48 0.71 -14.29 16 14 C 0.15 5.60 5.80 86.38 0.50 6.10 16 15 C 0.11 4.07 6.00 86.38 0.52 4.59 16 16 N -0.71 -18.93 5.39 -463.05 -2.50 -21.43 16 17 C 0.50 14.59 7.08 87.66 0.62 15.21 16 18 O -0.59 -23.50 15.63 -3.04 -0.05 -23.54 16 19 C -0.09 -1.72 2.09 -13.20 -0.03 -1.75 16 20 H 0.12 1.61 7.59 -2.38 -0.02 1.59 16 21 C -0.10 -2.00 4.51 30.23 0.14 -1.87 16 22 C -0.15 -1.89 5.32 30.10 0.16 -1.73 16 23 C 0.06 0.75 6.67 72.26 0.48 1.23 16 24 O -0.41 -6.99 10.17 -143.41 -1.46 -8.45 16 25 C 0.07 0.88 6.38 72.36 0.46 1.34 16 26 C -0.14 -2.26 4.62 28.90 0.13 -2.13 16 27 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 29 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.02 0.94 8.03 -2.39 -0.02 0.92 16 32 H 0.08 4.24 5.26 -2.39 -0.01 4.22 16 33 H 0.04 1.70 8.12 -2.39 -0.02 1.68 16 34 H 0.24 13.31 8.31 -92.71 -0.77 12.54 16 35 H 0.06 2.00 7.98 -2.39 -0.02 1.98 16 36 H 0.06 1.95 7.98 -2.39 -0.02 1.94 16 37 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.04 1.52 8.14 -2.38 -0.02 1.50 16 39 H 0.41 7.71 7.70 -92.71 -0.71 7.00 16 40 H 0.05 1.31 7.82 -2.39 -0.02 1.29 16 41 H 0.06 1.42 7.46 -2.39 -0.02 1.40 16 42 H 0.08 0.79 6.83 -2.39 -0.02 0.78 16 43 H 0.09 0.96 8.14 -2.38 -0.02 0.94 16 44 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 45 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 46 H 0.07 0.62 6.98 -2.38 -0.02 0.61 16 47 H 0.10 0.98 8.14 -2.38 -0.02 0.96 16 48 H 0.09 1.11 7.24 -2.39 -0.02 1.09 16 49 H 0.05 1.13 8.13 -2.39 -0.02 1.11 16 Total: -1.00 -71.14 380.90 1.91 -69.22 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: 0.20 Total: 12.07 kcal Atomic # 6 Polarization: 12.49 SS G_CDS: 6.36 Total: 18.85 kcal Atomic # 7 Polarization: -94.05 SS G_CDS: -4.04 Total: -98.09 kcal Atomic # 8 Polarization: -46.21 SS G_CDS: -2.66 Total: -48.87 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.04 Total: 46.81 kcal Total: -71.14 1.91 -69.22 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755838030.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.275 kcal (2) G-P(sol) polarization free energy of solvation -71.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds