Wall clock time and date at job start Tue Mar 31 2020 10:47:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31571 * 1 3 3 Si 1.86805 * 119.99875 * 2 1 4 4 H 1.48509 * 109.47006 * 270.00067 * 3 2 1 5 5 H 1.48498 * 109.47121 * 29.99911 * 3 2 1 6 6 H 1.48498 * 109.47487 * 150.00332 * 3 2 1 7 7 C 1.38631 * 120.00266 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00221 * 180.02562 * 7 2 1 9 9 O 1.34817 * 120.00038 * 359.97438 * 7 2 1 10 10 C 1.35776 * 116.99804 * 174.96261 * 9 7 2 11 11 C 1.38916 * 119.99557 * 185.07422 * 10 9 7 12 12 C 1.37997 * 120.00018 * 179.73212 * 11 10 9 13 13 C 1.38926 * 119.99793 * 0.54353 * 12 11 10 14 14 N 1.39991 * 120.00124 * 179.70724 * 13 12 11 15 15 C 1.34773 * 120.00031 * 35.14636 * 14 13 12 16 16 O 1.21293 * 120.00293 * 355.48763 * 15 14 13 17 17 C 1.50701 * 120.00046 * 175.49496 * 15 14 13 18 18 H 1.08999 * 115.55250 * 34.40941 * 17 15 14 19 19 C 1.53002 * 117.49532 * 248.74408 * 17 15 14 20 20 C 1.52999 * 117.49890 * 180.08743 * 17 15 14 21 21 Cl 1.80303 * 117.49783 * 214.97720 * 20 17 15 22 22 Cl 1.80298 * 117.50006 * 359.97438 * 20 17 15 23 23 C 1.38915 * 119.99702 * 359.72933 * 13 12 11 24 24 C 1.38009 * 120.00137 * 0.02562 * 23 13 12 25 25 H 0.96993 * 120.00124 * 359.97438 * 1 2 3 26 26 H 1.07995 * 119.99638 * 0.02562 * 11 10 9 27 27 H 1.07998 * 120.00535 * 180.27544 * 12 11 10 28 28 H 0.97004 * 119.99938 * 215.14381 * 14 13 12 29 29 H 1.08999 * 117.50025 * 0.02562 * 19 17 15 30 30 H 1.09004 * 117.49883 * 145.01647 * 19 17 15 31 31 H 1.08001 * 120.00268 * 179.97438 * 23 13 12 32 32 H 1.07993 * 119.99890 * 179.97438 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6178 0.0000 4 1 2.4972 2.0465 -1.4002 5 1 1.4471 2.6527 0.7000 6 1 3.5473 1.4403 0.6999 7 6 2.0089 -1.2005 -0.0005 8 1 3.0889 -1.2005 -0.0001 9 8 1.3349 -2.3681 -0.0005 10 6 2.0704 -3.5044 -0.1073 11 6 1.4353 -4.7348 -0.2199 12 6 2.1827 -5.8892 -0.3340 13 6 3.5703 -5.8220 -0.3249 14 7 4.3286 -6.9936 -0.4344 15 6 3.8927 -8.0087 -1.2064 16 8 2.8059 -7.9409 -1.7408 17 6 4.7555 -9.2281 -1.4057 18 1 5.3623 -9.5199 -0.5485 19 6 5.3450 -9.4563 -2.7990 20 6 4.2053 -10.3452 -2.2948 21 17 4.6108 -12.0434 -1.8447 22 17 2.5741 -10.1022 -3.0234 23 6 4.2053 -4.5922 -0.2066 24 6 3.4578 -3.4372 -0.0976 25 1 -0.4850 0.8400 0.0004 26 1 0.3566 -4.7873 -0.2229 27 1 1.6891 -6.8453 -0.4260 28 1 5.1678 -7.0749 0.0453 29 1 5.1092 -8.7243 -3.5713 30 1 6.3395 -9.8986 -2.8584 31 1 5.2841 -4.5399 -0.1990 32 1 3.9515 -2.4812 -0.0052 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000023228519.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:47:04 Heat of formation + Delta-G solvation = -24.826565 kcal Electronic energy + Delta-G solvation = -20446.572997 eV Core-core repulsion = 16846.665226 eV Total energy + Delta-G solvation = -3599.907771 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 315.022 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.61798 -40.49100 -38.75364 -37.78942 -36.96275 -36.08479 -35.38588 -34.14360 -31.85790 -29.80173 -27.41935 -25.67284 -23.89606 -23.36986 -22.64277 -21.27006 -19.91105 -18.96515 -18.87385 -18.05785 -16.75589 -16.38793 -16.34875 -16.09566 -15.76490 -15.48436 -15.07168 -14.61302 -14.40148 -14.20542 -14.06929 -13.58485 -13.49013 -13.27204 -13.19210 -12.93798 -12.68127 -12.42705 -12.13207 -12.10529 -11.90037 -11.61232 -11.34139 -11.11151 -10.98189 -10.55771 -10.42696 -9.82586 -8.60749 -8.44869 -6.12492 0.15559 0.51733 0.55637 1.11728 1.36794 1.37581 1.48774 1.55196 2.00616 2.19584 2.35330 2.83815 2.99425 3.16509 3.32341 3.53671 3.66755 4.08262 4.14952 4.17060 4.50881 4.56709 4.63462 4.72427 4.78138 5.07830 5.21374 5.31210 5.47999 5.57630 5.69351 6.03515 6.18022 6.52709 6.99347 7.21739 7.80671 8.78545 Molecular weight = 315.02amu Principal moments of inertia in cm(-1) A = 0.038437 B = 0.002511 C = 0.002432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.288612 B =11146.157326 C =11511.461590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.026 4.026 3 Si 1.021 2.979 4 H -0.265 1.265 5 H -0.274 1.274 6 H -0.248 1.248 7 C -0.412 4.412 8 H 0.108 0.892 9 O -0.233 6.233 10 C 0.108 3.892 11 C -0.193 4.193 12 C -0.071 4.071 13 C 0.064 3.936 14 N -0.640 5.640 15 C 0.524 3.476 16 O -0.536 6.536 17 C -0.149 4.149 18 H 0.184 0.816 19 C -0.092 4.092 20 C 0.003 3.997 21 Cl -0.086 7.086 22 Cl -0.089 7.089 23 C -0.075 4.075 24 C -0.222 4.222 25 H 0.272 0.728 26 H 0.107 0.893 27 H 0.133 0.867 28 H 0.427 0.573 29 H 0.122 0.878 30 H 0.168 0.832 31 H 0.162 0.838 32 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.258 -20.510 -2.801 27.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.223 4.223 3 Si 0.840 3.160 4 H -0.190 1.190 5 H -0.199 1.199 6 H -0.171 1.171 7 C -0.488 4.488 8 H 0.125 0.875 9 O -0.140 6.140 10 C 0.057 3.943 11 C -0.213 4.213 12 C -0.091 4.091 13 C -0.029 4.029 14 N -0.287 5.287 15 C 0.311 3.689 16 O -0.412 6.412 17 C -0.171 4.171 18 H 0.201 0.799 19 C -0.130 4.130 20 C -0.049 4.049 21 Cl -0.059 7.059 22 Cl -0.061 7.061 23 C -0.095 4.095 24 C -0.242 4.242 25 H 0.081 0.919 26 H 0.126 0.874 27 H 0.151 0.849 28 H 0.267 0.733 29 H 0.140 0.860 30 H 0.185 0.815 31 H 0.179 0.821 32 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 16.999 -20.456 -3.194 26.788 hybrid contribution -0.322 0.677 0.283 0.802 sum 16.677 -19.778 -2.911 26.034 Atomic orbital electron populations 1.70206 1.08204 1.28779 1.49036 1.26647 0.96830 1.02935 0.95922 0.84559 0.77942 0.74361 0.79176 1.18971 1.19915 1.17088 1.21882 0.92712 0.81274 1.52916 0.87499 1.83961 1.36062 1.12615 1.81330 1.19889 0.91889 0.87622 0.94850 1.20265 0.99700 0.90482 1.10884 1.20846 0.93205 0.97164 0.97903 1.17304 0.90062 0.86368 1.09176 1.42985 1.25245 1.13064 1.47411 1.20024 0.86657 0.83944 0.78241 1.90866 1.22330 1.79512 1.48495 1.23095 1.01311 0.92177 1.00494 0.79888 1.24143 0.97600 0.97421 0.93791 1.26575 0.88764 0.83530 1.06071 1.98758 1.92787 1.21382 1.92991 1.98805 1.27748 1.95851 1.83736 1.20854 1.00633 0.89068 0.98968 1.21136 0.92485 1.00050 1.10484 0.91923 0.87443 0.84901 0.73336 0.85985 0.81465 0.82093 0.85051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.15 13.67 21.61 0.30 -56.85 16 2 C -0.03 -1.49 5.49 84.83 0.47 -1.02 16 3 Si 1.02 42.22 29.55 68.60 2.03 44.25 16 4 H -0.26 -10.45 7.11 99.48 0.71 -9.75 16 5 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 6 H -0.25 -9.28 7.11 99.48 0.71 -8.57 16 7 C -0.41 -23.66 9.48 67.91 0.64 -23.01 16 8 H 0.11 5.48 5.20 -2.91 -0.02 5.47 16 9 O -0.23 -14.08 9.76 -22.89 -0.22 -14.30 16 10 C 0.11 5.39 6.65 22.59 0.15 5.54 16 11 C -0.19 -8.77 9.98 22.38 0.22 -8.55 16 12 C -0.07 -2.69 8.69 22.38 0.19 -2.50 16 13 C 0.06 1.97 6.30 38.16 0.24 2.21 16 14 N -0.64 -12.85 5.34 -303.38 -1.62 -14.47 16 15 C 0.52 11.32 7.45 87.66 0.65 11.98 16 16 O -0.54 -16.63 11.14 -3.07 -0.03 -16.67 16 17 C -0.15 -1.80 6.03 -11.54 -0.07 -1.87 16 18 H 0.18 0.84 8.14 -2.39 -0.02 0.82 16 19 C -0.09 -0.83 9.92 30.62 0.30 -0.53 16 20 C 0.00 0.04 3.62 30.62 0.11 0.15 16 21 Cl -0.09 -1.24 29.29 -2.72 -0.08 -1.32 16 22 Cl -0.09 -2.15 26.13 -2.72 -0.07 -2.22 16 23 C -0.08 -2.32 9.96 22.38 0.22 -2.09 16 24 C -0.22 -9.10 9.16 22.38 0.20 -8.90 16 25 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 26 H 0.11 4.98 8.06 -2.91 -0.02 4.96 16 27 H 0.13 4.96 6.23 -2.91 -0.02 4.95 16 28 H 0.43 4.63 8.82 -92.71 -0.82 3.81 16 29 H 0.12 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.17 0.32 8.14 -2.39 -0.02 0.30 16 31 H 0.16 3.38 8.06 -2.91 -0.02 3.36 16 32 H 0.13 5.33 5.63 -2.91 -0.02 5.31 16 Total: -1.00 -77.89 313.66 4.02 -73.88 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: 0.38 Total: 16.29 kcal Atomic # 6 Polarization: -31.93 SS G_CDS: 3.34 Total: -28.58 kcal Atomic # 7 Polarization: -70.00 SS G_CDS: -1.32 Total: -71.32 kcal Atomic # 8 Polarization: -30.71 SS G_CDS: -0.26 Total: -30.97 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 2.03 Total: 44.25 kcal Atomic # 17 Polarization: -3.39 SS G_CDS: -0.15 Total: -3.54 kcal Total: -77.89 4.02 -73.88 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000023228519.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.048 kcal (2) G-P(sol) polarization free energy of solvation -77.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds