Wall clock time and date at job start Tue Mar 31 2020 10:42:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.50697 * 109.47239 * 120.00336 * 2 1 3 5 5 H 1.07994 * 120.00496 * 120.00058 * 4 2 1 6 6 C 1.37887 * 119.99690 * 299.99759 * 4 2 1 7 7 N 1.31515 * 119.99477 * 180.02562 * 6 4 2 8 8 Si 1.86789 * 119.99942 * 359.97438 * 6 4 2 9 9 H 1.48505 * 109.47181 * 90.00449 * 8 6 4 10 10 H 1.48500 * 109.47253 * 209.99840 * 8 6 4 11 11 H 1.48501 * 109.47537 * 330.00117 * 8 6 4 12 12 N 1.46500 * 109.46998 * 240.00054 * 2 1 3 13 13 C 1.34770 * 119.99955 * 84.99585 * 12 2 1 14 14 O 1.21578 * 120.00233 * 0.02562 * 13 12 2 15 15 C 1.47671 * 120.00297 * 180.02562 * 13 12 2 16 16 C 1.39693 * 120.12186 * 359.72426 * 15 13 12 17 17 C 1.37791 * 119.88827 * 179.72354 * 16 15 13 18 18 C 1.38712 * 120.14340 * 0.57960 * 17 16 15 19 19 F 1.35102 * 119.86919 * 179.71537 * 18 17 16 20 20 C 1.38573 * 120.26118 * 359.69791 * 18 17 16 21 21 C 1.37999 * 120.10792 * 359.97438 * 20 18 17 22 22 Br 1.89089 * 120.07681 * 180.02562 * 21 20 18 23 23 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 24 24 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 25 25 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 26 26 H 0.97006 * 119.99768 * 179.97438 * 7 6 4 27 27 H 0.96997 * 120.00110 * 265.00363 * 12 2 1 28 28 H 1.08001 * 120.06030 * 0.02562 * 16 15 13 29 29 H 1.08000 * 119.93037 * 180.27623 * 17 16 15 30 30 H 1.08001 * 119.95076 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 2.1382 -0.8591 3.5565 8 14 0.6261 1.2798 2.6541 9 1 -0.8019 0.8745 2.6994 10 1 0.9774 1.9953 3.9071 11 1 0.8493 2.1773 1.4923 12 7 2.0184 -0.6906 -1.1962 13 6 2.1470 -0.0183 -2.3571 14 8 1.8582 1.1614 -2.4116 15 6 2.6386 -0.7145 -3.5630 16 6 2.9766 -2.0685 -3.5020 17 6 3.4295 -2.7148 -4.6315 18 6 3.5617 -2.0208 -5.8253 19 9 4.0117 -2.6586 -6.9280 20 6 3.2336 -0.6761 -5.8914 21 6 2.7726 -0.0200 -4.7682 22 35 2.3246 1.8147 -4.8595 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 1.9042 -0.5275 4.4376 27 1 2.2490 -1.6317 -1.1527 28 1 2.8786 -2.6092 -2.5722 29 1 3.6868 -3.7627 -4.5862 30 1 3.3380 -0.1408 -6.8235 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050336150.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:42:09 Heat of formation + Delta-G solvation = -35.473740 kcal Electronic energy + Delta-G solvation = -17925.241314 eV Core-core repulsion = 14682.107787 eV Total energy + Delta-G solvation = -3243.133528 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 315.001 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -49.23996 -40.00446 -38.06788 -35.12342 -32.78507 -32.25244 -31.35266 -29.72973 -29.12567 -25.23747 -23.98520 -23.02164 -21.27548 -19.80566 -18.32984 -17.55886 -16.76982 -16.28481 -15.94786 -15.37185 -15.07897 -14.50695 -14.36090 -13.90017 -13.59943 -13.36972 -13.06890 -12.79271 -12.64488 -12.22007 -11.85158 -11.38475 -11.31599 -10.90180 -10.86225 -10.53717 -10.20893 -9.64285 -9.27340 -9.20950 -8.92023 -8.77889 -8.63620 -8.18942 -6.23958 -4.26916 0.44516 0.75895 1.55663 2.79961 3.21968 3.34411 3.38612 3.70081 3.75920 3.89608 4.29416 4.37005 4.58343 4.82065 4.99167 5.11200 5.17286 5.52595 5.60326 5.81278 5.82861 6.28050 6.35163 6.37974 6.52645 6.82690 7.13459 7.21896 7.46805 8.07352 8.44206 8.70166 8.81508 9.36480 10.88098 Molecular weight = 315.00amu Principal moments of inertia in cm(-1) A = 0.020226 B = 0.004712 C = 0.003935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.022585 B = 5940.232572 C = 7113.842628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.238 3.762 3 H 0.052 0.948 4 C -0.536 4.536 5 H 0.080 0.920 6 C 0.079 3.921 7 N -0.892 5.892 8 Si 0.885 3.115 9 H -0.276 1.276 10 H -0.294 1.294 11 H -0.261 1.261 12 N -0.692 5.692 13 C 0.534 3.466 14 O -0.519 6.519 15 C -0.111 4.111 16 C -0.052 4.052 17 C -0.147 4.147 18 C 0.120 3.880 19 F -0.132 7.132 20 C -0.138 4.138 21 C -0.022 4.022 22 Br 0.003 6.997 23 H 0.048 0.952 24 H 0.037 0.963 25 H 0.053 0.947 26 H 0.268 0.732 27 H 0.393 0.607 28 H 0.149 0.851 29 H 0.147 0.853 30 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.578 -1.301 -19.443 19.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.135 3.865 3 H 0.070 0.930 4 C -0.574 4.574 5 H 0.098 0.902 6 C -0.125 4.125 7 N -0.528 5.528 8 Si 0.715 3.285 9 H -0.203 1.203 10 H -0.222 1.222 11 H -0.186 1.186 12 N -0.341 5.341 13 C 0.318 3.682 14 O -0.397 6.397 15 C -0.116 4.116 16 C -0.072 4.072 17 C -0.166 4.166 18 C 0.099 3.901 19 F -0.111 7.111 20 C -0.159 4.159 21 C -0.103 4.103 22 Br 0.090 6.910 23 H 0.066 0.934 24 H 0.056 0.944 25 H 0.072 0.928 26 H 0.078 0.922 27 H 0.227 0.773 28 H 0.167 0.833 29 H 0.165 0.835 30 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 1.211 0.238 -19.304 19.343 hybrid contribution -0.260 -0.405 0.102 0.493 sum 0.951 -0.167 -19.202 19.226 Atomic orbital electron populations 1.22451 0.99139 1.00911 0.99459 1.19146 0.90209 0.94780 0.82378 0.93040 1.21013 1.33408 1.14502 0.88503 0.90203 1.24820 0.95450 0.96690 0.95493 1.69866 1.44798 1.40101 0.98073 0.86880 0.80511 0.83609 0.77532 1.20289 1.22150 1.18554 1.46161 1.64668 1.13713 1.09549 1.18012 0.79736 0.87139 0.83271 1.90927 1.50059 1.14568 1.84141 1.20165 1.02494 0.94368 0.94594 1.21300 0.94411 0.92713 0.98752 1.21210 1.02500 1.01553 0.91347 1.17731 0.98450 0.90465 0.83408 1.91531 1.86412 1.81695 1.51450 1.21003 1.02396 0.93261 0.99234 1.21750 1.00570 0.93852 0.94169 1.96813 1.91673 1.04378 1.98144 0.93376 0.94373 0.92820 0.92244 0.77294 0.83317 0.83505 0.83377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.51 8.97 37.16 0.33 -3.18 16 2 C 0.24 5.49 2.15 -69.08 -0.15 5.35 16 3 H 0.05 1.31 6.63 -51.93 -0.34 0.97 16 4 C -0.54 -14.08 9.31 -34.44 -0.32 -14.40 16 5 H 0.08 2.19 7.98 -52.49 -0.42 1.77 16 6 C 0.08 2.18 5.45 -17.82 -0.10 2.08 16 7 N -0.89 -25.95 13.96 55.43 0.77 -25.18 16 8 Si 0.89 21.40 24.37 -169.99 -4.14 17.26 16 9 H -0.28 -6.47 6.87 56.52 0.39 -6.08 16 10 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 11 H -0.26 -6.26 6.53 56.52 0.37 -5.90 16 12 N -0.69 -13.17 5.02 -55.93 -0.28 -13.45 16 13 C 0.53 9.84 7.72 -12.41 -0.10 9.75 16 14 O -0.52 -10.99 13.13 5.30 0.07 -10.92 16 15 C -0.11 -1.62 5.88 -104.94 -0.62 -2.23 16 16 C -0.05 -0.59 9.53 -39.20 -0.37 -0.97 16 17 C -0.15 -1.43 10.01 -39.57 -0.40 -1.83 16 18 C 0.12 1.27 7.31 -39.28 -0.29 0.98 16 19 F -0.13 -1.39 17.26 2.25 0.04 -1.35 16 20 C -0.14 -1.55 9.75 -39.55 -0.39 -1.93 16 21 C -0.02 -0.30 6.26 -39.11 -0.24 -0.55 16 22 Br 0.00 0.04 30.39 -68.01 -2.07 -2.02 16 23 H 0.05 1.09 3.27 -51.93 -0.17 0.92 16 24 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 26 H 0.27 7.33 8.31 -40.82 -0.34 7.00 16 27 H 0.39 6.41 6.57 -40.82 -0.27 6.14 16 28 H 0.15 1.43 6.40 -52.49 -0.34 1.10 16 29 H 0.15 1.04 8.06 -52.49 -0.42 0.62 16 30 H 0.15 1.36 8.06 -52.49 -0.42 0.94 16 LS Contribution 278.53 15.07 4.20 4.20 Total: -1.00 -30.15 278.53 -6.45 -36.61 By element: Atomic # 1 Polarization: 4.20 SS G_CDS: -2.41 Total: 1.79 kcal Atomic # 6 Polarization: -4.30 SS G_CDS: -2.63 Total: -6.93 kcal Atomic # 7 Polarization: -39.13 SS G_CDS: 0.49 Total: -38.63 kcal Atomic # 8 Polarization: -10.99 SS G_CDS: 0.07 Total: -10.92 kcal Atomic # 9 Polarization: -1.39 SS G_CDS: 0.04 Total: -1.35 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.14 Total: 17.26 kcal Atomic # 35 Polarization: 0.04 SS G_CDS: -2.07 Total: -2.02 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -30.15 -6.45 -36.61 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050336150.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.134 kcal (2) G-P(sol) polarization free energy of solvation -30.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds