Wall clock time and date at job start Tue Mar 31 2020 10:42:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.50697 * 109.47239 * 120.00336 * 2 1 3 5 5 H 1.07994 * 120.00496 * 120.00058 * 4 2 1 6 6 C 1.37887 * 119.99690 * 299.99759 * 4 2 1 7 7 N 1.31515 * 119.99477 * 180.02562 * 6 4 2 8 8 Si 1.86789 * 119.99942 * 359.97438 * 6 4 2 9 9 H 1.48505 * 109.47181 * 90.00449 * 8 6 4 10 10 H 1.48500 * 109.47253 * 209.99840 * 8 6 4 11 11 H 1.48501 * 109.47537 * 330.00117 * 8 6 4 12 12 N 1.46500 * 109.46998 * 240.00054 * 2 1 3 13 13 C 1.34770 * 119.99955 * 84.99585 * 12 2 1 14 14 O 1.21578 * 120.00233 * 0.02562 * 13 12 2 15 15 C 1.47671 * 120.00297 * 180.02562 * 13 12 2 16 16 C 1.39693 * 120.12186 * 359.72426 * 15 13 12 17 17 C 1.37791 * 119.88827 * 179.72354 * 16 15 13 18 18 C 1.38712 * 120.14340 * 0.57960 * 17 16 15 19 19 F 1.35102 * 119.86919 * 179.71537 * 18 17 16 20 20 C 1.38573 * 120.26118 * 359.69791 * 18 17 16 21 21 C 1.37999 * 120.10792 * 359.97438 * 20 18 17 22 22 Br 1.89089 * 120.07681 * 180.02562 * 21 20 18 23 23 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 24 24 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 25 25 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 26 26 H 0.97006 * 119.99768 * 179.97438 * 7 6 4 27 27 H 0.96997 * 120.00110 * 265.00363 * 12 2 1 28 28 H 1.08001 * 120.06030 * 0.02562 * 16 15 13 29 29 H 1.08000 * 119.93037 * 180.27623 * 17 16 15 30 30 H 1.08001 * 119.95076 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 2.1382 -0.8591 3.5565 8 14 0.6261 1.2798 2.6541 9 1 -0.8019 0.8745 2.6994 10 1 0.9774 1.9953 3.9071 11 1 0.8493 2.1773 1.4923 12 7 2.0184 -0.6906 -1.1962 13 6 2.1470 -0.0183 -2.3571 14 8 1.8582 1.1614 -2.4116 15 6 2.6386 -0.7145 -3.5630 16 6 2.9766 -2.0685 -3.5020 17 6 3.4295 -2.7148 -4.6315 18 6 3.5617 -2.0208 -5.8253 19 9 4.0117 -2.6586 -6.9280 20 6 3.2336 -0.6761 -5.8914 21 6 2.7726 -0.0200 -4.7682 22 35 2.3246 1.8147 -4.8595 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 1.9042 -0.5275 4.4376 27 1 2.2490 -1.6317 -1.1527 28 1 2.8786 -2.6092 -2.5722 29 1 3.6868 -3.7627 -4.5862 30 1 3.3380 -0.1408 -6.8235 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050336150.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:42:09 Heat of formation + Delta-G solvation = -54.975566 kcal Electronic energy + Delta-G solvation = -17926.086977 eV Core-core repulsion = 14682.107787 eV Total energy + Delta-G solvation = -3243.979191 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 315.001 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -50.08488 -41.23889 -39.28901 -36.83949 -34.50325 -33.41483 -32.69816 -31.04090 -30.29259 -27.20252 -25.16289 -24.02820 -22.73117 -21.35887 -19.67931 -18.65478 -18.06898 -17.81632 -17.01316 -16.79227 -16.35389 -15.91171 -15.74470 -14.99215 -14.88032 -14.67487 -14.51857 -14.11594 -13.95883 -13.85369 -13.54724 -13.11512 -12.77273 -12.26846 -12.12279 -11.88836 -11.85871 -11.49453 -11.24939 -10.84943 -10.14479 -10.03001 -9.96084 -9.70489 -8.36195 -6.41621 -0.56042 -0.12232 0.53432 1.29427 1.38190 1.47088 1.71091 2.27972 2.31376 2.54113 3.00519 3.00823 3.48519 3.69073 3.81358 4.01278 4.21667 4.46604 4.56552 4.64334 4.71870 4.74863 4.90698 4.93863 5.04291 5.33945 5.44971 5.52357 5.63279 6.14699 6.59577 6.82631 7.20179 7.39225 8.78806 Molecular weight = 315.00amu Principal moments of inertia in cm(-1) A = 0.020226 B = 0.004712 C = 0.003935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.022585 B = 5940.232572 C = 7113.842628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.244 3.756 3 H 0.026 0.974 4 C -0.531 4.531 5 H 0.060 0.940 6 C 0.031 3.969 7 N -0.933 5.933 8 Si 0.936 3.064 9 H -0.261 1.261 10 H -0.295 1.295 11 H -0.262 1.262 12 N -0.692 5.692 13 C 0.534 3.466 14 O -0.552 6.552 15 C -0.133 4.133 16 C -0.045 4.045 17 C -0.132 4.132 18 C 0.129 3.871 19 F -0.127 7.127 20 C -0.134 4.134 21 C -0.033 4.033 22 Br -0.016 7.016 23 H 0.040 0.960 24 H 0.046 0.954 25 H 0.065 0.935 26 H 0.270 0.730 27 H 0.406 0.594 28 H 0.166 0.834 29 H 0.182 0.818 30 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.442 -2.417 -21.143 21.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.140 3.860 3 H 0.044 0.956 4 C -0.569 4.569 5 H 0.078 0.922 6 C -0.169 4.169 7 N -0.572 5.572 8 Si 0.764 3.236 9 H -0.186 1.186 10 H -0.222 1.222 11 H -0.186 1.186 12 N -0.342 5.342 13 C 0.320 3.680 14 O -0.431 6.431 15 C -0.139 4.139 16 C -0.065 4.065 17 C -0.150 4.150 18 C 0.108 3.892 19 F -0.106 7.106 20 C -0.154 4.154 21 C -0.114 4.114 22 Br 0.070 6.930 23 H 0.058 0.942 24 H 0.065 0.935 25 H 0.084 0.916 26 H 0.079 0.921 27 H 0.242 0.758 28 H 0.183 0.817 29 H 0.199 0.801 30 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 1.078 -0.903 -21.035 21.082 hybrid contribution -0.115 -0.169 0.508 0.547 sum 0.963 -1.072 -20.527 20.578 Atomic orbital electron populations 1.22343 0.97769 1.01749 0.99466 1.18779 0.91184 0.93312 0.82772 0.95607 1.21239 1.32285 1.13630 0.89756 0.92189 1.25506 0.96793 0.99164 0.95402 1.69970 1.46680 1.41902 0.98642 0.86050 0.79841 0.80582 0.77167 1.18626 1.22224 1.18635 1.45934 1.65165 1.14297 1.08831 1.18521 0.78737 0.86855 0.83869 1.90905 1.51340 1.16091 1.84797 1.19898 1.05166 0.95721 0.93091 1.21472 0.93527 0.91329 1.00129 1.21523 1.00514 1.02945 0.90061 1.17805 0.97459 0.90167 0.83768 1.91556 1.86192 1.81493 1.51320 1.21145 1.01480 0.93729 0.99088 1.21782 1.01767 0.93078 0.94798 1.96787 1.91912 1.06115 1.98138 0.94153 0.93481 0.91561 0.92104 0.75775 0.81683 0.80094 0.81587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.55 8.97 71.98 0.65 -5.91 16 2 C 0.24 11.20 2.15 44.25 0.10 11.29 16 3 H 0.03 1.33 6.63 -2.39 -0.02 1.32 16 4 C -0.53 -27.99 9.31 25.60 0.24 -27.75 16 5 H 0.06 3.33 7.98 -2.91 -0.02 3.31 16 6 C 0.03 1.72 5.45 84.66 0.46 2.18 16 7 N -0.93 -54.89 13.96 21.45 0.30 -54.59 16 8 Si 0.94 44.02 24.37 68.60 1.67 45.70 16 9 H -0.26 -11.53 6.87 99.48 0.68 -10.84 16 10 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 11 H -0.26 -12.25 6.53 99.48 0.65 -11.60 16 12 N -0.69 -25.86 5.02 -449.14 -2.25 -28.11 16 13 C 0.53 19.35 7.72 86.74 0.67 20.02 16 14 O -0.55 -23.40 13.13 -3.96 -0.05 -23.45 16 15 C -0.13 -3.70 5.88 -20.07 -0.12 -3.81 16 16 C -0.05 -0.90 9.53 22.52 0.21 -0.68 16 17 C -0.13 -2.04 10.01 22.28 0.22 -1.81 16 18 C 0.13 2.26 7.31 22.46 0.16 2.43 16 19 F -0.13 -2.18 17.26 44.97 0.78 -1.41 16 20 C -0.13 -2.66 9.75 22.29 0.22 -2.45 16 21 C -0.03 -0.86 6.26 22.58 0.14 -0.72 16 22 Br -0.02 -0.48 30.39 -20.37 -0.62 -1.10 16 23 H 0.04 1.75 3.27 -2.39 -0.01 1.75 16 24 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 25 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 26 H 0.27 14.95 8.31 -92.70 -0.77 14.18 16 27 H 0.41 12.76 6.57 -92.71 -0.61 12.15 16 28 H 0.17 2.68 6.40 -2.91 -0.02 2.66 16 29 H 0.18 1.61 8.06 -2.91 -0.02 1.59 16 30 H 0.17 2.63 8.06 -2.91 -0.02 2.61 16 Total: -1.00 -65.00 278.53 3.28 -61.71 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: 0.51 Total: 8.46 kcal Atomic # 6 Polarization: -10.16 SS G_CDS: 2.95 Total: -7.21 kcal Atomic # 7 Polarization: -80.75 SS G_CDS: -1.95 Total: -82.71 kcal Atomic # 8 Polarization: -23.40 SS G_CDS: -0.05 Total: -23.45 kcal Atomic # 9 Polarization: -2.18 SS G_CDS: 0.78 Total: -1.41 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 1.67 Total: 45.70 kcal Atomic # 35 Polarization: -0.48 SS G_CDS: -0.62 Total: -1.10 kcal Total: -65.00 3.28 -61.71 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050336150.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.736 kcal (2) G-P(sol) polarization free energy of solvation -64.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds