Wall clock time and date at job start Tue Mar 31 2020 10:42:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47021 * 119.99638 * 2 1 3 13 13 C 1.34779 * 119.99943 * 275.00054 * 12 2 1 14 14 O 1.21549 * 120.00261 * 0.02562 * 13 12 2 15 15 C 1.47857 * 120.00033 * 180.02562 * 13 12 2 16 16 C 1.39566 * 120.12994 * 180.02562 * 15 13 12 17 17 C 1.38181 * 119.84849 * 179.97438 * 16 15 13 18 18 F 1.35099 * 119.94808 * 179.97438 * 17 16 15 19 19 C 1.38573 * 120.09993 * 0.02562 * 17 16 15 20 20 C 1.38383 * 120.26235 * 359.97022 * 19 17 16 21 21 Br 1.89098 * 119.92577 * 180.02562 * 20 19 17 22 22 C 1.38086 * 120.15082 * 359.75147 * 20 19 17 23 23 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 25 25 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 26 26 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 27 27 H 0.96997 * 120.00208 * 95.00345 * 12 2 1 28 28 H 1.08004 * 120.07668 * 359.94853 * 16 15 13 29 29 H 1.08008 * 119.87019 * 179.97438 * 19 17 16 30 30 H 1.07996 * 120.05327 * 180.25069 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 7 2.0183 -0.6905 1.1962 13 6 2.1470 -0.0181 2.3571 14 8 1.8575 1.1612 2.4118 15 6 2.6404 -0.7149 3.5643 16 6 2.7742 -0.0213 4.7680 17 6 3.2353 -0.6783 5.8928 18 9 3.3661 -0.0088 7.0589 19 6 3.5648 -2.0227 5.8261 20 6 3.4337 -2.7146 4.6349 21 35 3.8854 -4.5491 4.5549 22 6 2.9685 -2.0699 3.5059 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 0.7088 1.1611 -3.4845 27 1 2.2490 -1.6316 1.1527 28 1 2.5183 1.0267 4.8202 29 1 3.9253 -2.5325 6.7074 30 1 2.8630 -2.6125 2.5781 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050337294.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:42:14 Heat of formation + Delta-G solvation = -75.673861 kcal Electronic energy + Delta-G solvation = -17681.047261 eV Core-core repulsion = 14436.170525 eV Total energy + Delta-G solvation = -3244.876736 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 315.001 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -50.09372 -41.28877 -39.40321 -36.81373 -34.48184 -33.60672 -32.42547 -30.56794 -30.33854 -27.34650 -25.62349 -23.76073 -22.81362 -21.36485 -19.79609 -18.22713 -17.89168 -17.47347 -17.08387 -16.87421 -16.82340 -16.08785 -15.88057 -15.05641 -14.90289 -14.54298 -14.44056 -14.03530 -13.69469 -13.28525 -13.01376 -12.88352 -12.74052 -12.60797 -12.27194 -12.15619 -11.91352 -11.46210 -11.13527 -11.00696 -10.59462 -10.26569 -9.93443 -9.82738 -8.17140 -6.34825 -0.57020 -0.26433 0.33400 1.47424 1.49066 1.56700 1.59170 2.20544 2.46361 2.48744 2.99763 3.13878 3.44552 3.65296 3.82847 3.90432 4.04110 4.45133 4.64126 4.74354 4.79666 4.90517 4.92987 5.07303 5.39681 5.40640 5.55097 5.65859 5.86374 6.07685 6.70240 6.80764 7.26041 7.41728 8.89031 Molecular weight = 315.00amu Principal moments of inertia in cm(-1) A = 0.015889 B = 0.004084 C = 0.003347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1761.813026 B = 6854.511167 C = 8363.359242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.269 3.731 3 H 0.004 0.996 4 C -0.548 4.548 5 H 0.076 0.924 6 C 0.017 3.983 7 N -0.916 5.916 8 Si 0.972 3.028 9 H -0.288 1.288 10 H -0.271 1.271 11 H -0.263 1.263 12 N -0.692 5.692 13 C 0.542 3.458 14 O -0.587 6.587 15 C -0.100 4.100 16 C -0.091 4.091 17 C 0.102 3.898 18 F -0.129 7.129 19 C -0.090 4.090 20 C -0.073 4.073 21 Br -0.012 7.012 22 C -0.062 4.062 23 H 0.042 0.958 24 H 0.013 0.987 25 H 0.069 0.931 26 H 0.266 0.734 27 H 0.406 0.594 28 H 0.145 0.855 29 H 0.178 0.822 30 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.669 -13.260 17.065 22.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.166 3.834 3 H 0.022 0.978 4 C -0.586 4.586 5 H 0.094 0.906 6 C -0.184 4.184 7 N -0.554 5.554 8 Si 0.797 3.203 9 H -0.213 1.213 10 H -0.196 1.196 11 H -0.188 1.188 12 N -0.341 5.341 13 C 0.329 3.671 14 O -0.470 6.470 15 C -0.104 4.104 16 C -0.111 4.111 17 C 0.082 3.918 18 F -0.108 7.108 19 C -0.111 4.111 20 C -0.153 4.153 21 Br 0.074 6.926 22 C -0.083 4.083 23 H 0.062 0.938 24 H 0.032 0.968 25 H 0.087 0.913 26 H 0.075 0.925 27 H 0.242 0.758 28 H 0.163 0.837 29 H 0.195 0.805 30 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 6.543 -12.995 16.927 22.321 hybrid contribution 0.024 0.377 -0.774 0.861 sum 6.567 -12.618 16.153 21.524 Atomic orbital electron populations 1.21913 0.97977 0.99718 0.99776 1.18455 0.91356 0.92139 0.81437 0.97844 1.21484 1.32834 1.13739 0.90576 0.90605 1.25777 0.94790 0.95533 1.02269 1.70042 1.36812 1.23863 1.24732 0.85396 0.78643 0.78750 0.77553 1.21318 1.19589 1.18776 1.46230 1.64118 1.14286 1.09428 1.18565 0.78175 0.86365 0.83977 1.90730 1.53092 1.17480 1.85668 1.19651 1.03175 0.94229 0.93334 1.21373 0.97132 1.01866 0.90707 1.17256 1.02430 0.90564 0.81597 1.91549 1.93661 1.80261 1.45298 1.21466 0.98594 0.92000 0.99009 1.21493 1.05102 0.93337 0.95330 1.96818 1.91999 1.04791 1.98980 1.21496 0.95067 0.92582 0.99110 0.93841 0.96790 0.91269 0.92503 0.75779 0.83716 0.80467 0.82566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.70 9.26 71.98 0.67 -6.04 16 2 C 0.27 13.65 2.56 44.24 0.11 13.76 16 3 H 0.00 0.22 7.58 -2.38 -0.02 0.20 16 4 C -0.55 -28.16 8.73 25.60 0.22 -27.94 16 5 H 0.08 3.59 7.74 -2.91 -0.02 3.57 16 6 C 0.02 0.88 5.30 84.66 0.45 1.32 16 7 N -0.92 -51.58 11.32 21.45 0.24 -51.34 16 8 Si 0.97 40.95 29.54 68.60 2.03 42.97 16 9 H -0.29 -12.12 7.11 99.48 0.71 -11.41 16 10 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 11 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 12 N -0.69 -27.97 5.02 -448.97 -2.25 -30.23 16 13 C 0.54 21.56 7.74 86.79 0.67 22.23 16 14 O -0.59 -28.47 16.01 -3.87 -0.06 -28.53 16 15 C -0.10 -2.93 5.87 -20.10 -0.12 -3.05 16 16 C -0.09 -2.44 9.57 22.58 0.22 -2.22 16 17 C 0.10 2.21 7.29 22.34 0.16 2.37 16 18 F -0.13 -2.80 17.26 44.97 0.78 -2.03 16 19 C -0.09 -1.58 9.76 22.38 0.22 -1.36 16 20 C -0.07 -1.39 6.22 22.27 0.14 -1.25 16 21 Br -0.01 -0.19 33.69 -20.37 -0.69 -0.87 16 22 C -0.06 -1.43 9.27 22.55 0.21 -1.22 16 23 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 24 H 0.01 0.65 8.14 -2.39 -0.02 0.63 16 25 H 0.07 3.77 6.07 -2.39 -0.01 3.75 16 26 H 0.27 14.22 8.31 -92.71 -0.77 13.45 16 27 H 0.41 13.47 6.57 -92.71 -0.61 12.86 16 28 H 0.15 4.16 7.65 -2.91 -0.02 4.14 16 29 H 0.18 2.08 8.06 -2.91 -0.02 2.06 16 30 H 0.16 3.21 6.40 -2.91 -0.02 3.19 16 Total: -1.00 -62.83 290.39 3.58 -59.25 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: 0.58 Total: 14.17 kcal Atomic # 6 Polarization: -6.35 SS G_CDS: 2.95 Total: -3.40 kcal Atomic # 7 Polarization: -79.56 SS G_CDS: -2.01 Total: -81.57 kcal Atomic # 8 Polarization: -28.47 SS G_CDS: -0.06 Total: -28.53 kcal Atomic # 9 Polarization: -2.80 SS G_CDS: 0.78 Total: -2.03 kcal Atomic # 14 Polarization: 40.95 SS G_CDS: 2.03 Total: 42.97 kcal Atomic # 35 Polarization: -0.19 SS G_CDS: -0.69 Total: -0.87 kcal Total: -62.83 3.58 -59.25 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050337294.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.424 kcal (2) G-P(sol) polarization free energy of solvation -62.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds