Wall clock time and date at job start Tue Mar 31 2020 11:05:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 S 1.81407 * 109.47032 * 2 1 4 4 C 1.76196 * 103.00121 * 180.02562 * 3 2 1 5 5 N 1.29643 * 125.40660 * 0.02562 * 4 3 2 6 6 N 1.37765 * 115.61085 * 179.97438 * 5 4 3 7 7 C 1.29646 * 115.61223 * 0.02562 * 6 5 4 8 8 S 1.76199 * 125.40899 * 179.97438 * 7 6 5 9 9 C 1.81400 * 103.00024 * 0.02562 * 8 7 6 10 10 C 1.52993 * 109.47167 * 180.02562 * 9 8 7 11 11 H 1.09007 * 109.47314 * 304.99780 * 10 9 8 12 12 C 1.47198 * 109.47360 * 64.99659 * 10 9 8 13 13 N 9.29378 * 139.40953 * 338.37550 * 3 1 2 14 14 C 1.52995 * 109.47592 * 184.99841 * 10 9 8 15 15 C 1.50697 * 109.47870 * 174.99909 * 14 10 9 16 16 H 1.08001 * 119.99244 * 359.97438 * 15 14 10 17 17 C 1.37874 * 120.00183 * 180.02562 * 15 14 10 18 18 N 1.31512 * 120.00244 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99631 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47676 * 59.99687 * 19 17 15 21 21 H 1.48503 * 109.46952 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.47384 * 299.99111 * 19 17 15 23 23 S 1.76039 * 109.18246 * 359.97438 * 7 6 5 24 24 H 1.08997 * 109.47532 * 59.99891 * 1 2 3 25 25 H 1.09002 * 109.47089 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47423 * 299.99582 * 1 2 3 27 27 H 1.08996 * 109.47423 * 240.00418 * 2 1 3 28 28 H 1.09005 * 109.47378 * 119.99826 * 2 1 3 29 29 H 1.08999 * 109.46962 * 299.99801 * 9 8 7 30 30 H 1.08997 * 109.47383 * 59.99704 * 9 8 7 31 31 H 1.09000 * 109.47495 * 295.00358 * 14 10 9 32 32 H 1.09007 * 109.46921 * 54.99278 * 14 10 9 33 33 H 0.96997 * 119.99991 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7103 0.0000 4 6 3.8854 1.5118 -0.0008 5 7 4.5126 0.3773 -0.0017 6 7 5.8880 0.4572 -0.0027 7 6 6.3796 1.6568 -0.0021 8 16 8.0956 2.0569 -0.0025 9 6 8.8943 0.4282 -0.0046 10 6 10.4139 0.6054 -0.0045 11 1 10.7065 1.2341 -0.8456 12 6 10.8335 1.2433 1.2540 13 7 11.1572 1.7364 2.2284 14 6 11.0870 -0.7626 -0.1320 15 6 12.5778 -0.5796 -0.2554 16 1 13.0026 0.4133 -0.2445 17 6 13.3991 -1.6796 -0.3833 18 7 12.8817 -2.8886 -0.3972 19 14 15.2470 -1.4526 -0.5356 20 1 15.7619 -0.7590 0.6723 21 1 15.9003 -2.7805 -0.6595 22 1 15.5482 -0.6381 -1.7402 23 16 5.0605 2.8225 -0.0008 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5137 0.8900 27 1 1.8933 -0.5137 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 8.5934 -0.1252 0.8849 30 1 8.5925 -0.1234 -0.8950 31 1 10.8664 -1.3600 0.7526 32 1 10.7089 -1.2724 -1.0182 33 1 13.4597 -3.6624 -0.4868 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066398624.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:41 Heat of formation + Delta-G solvation = 67.038300 kcal Electronic energy + Delta-G solvation = -17540.540597 eV Core-core repulsion = 14559.582515 eV Total energy + Delta-G solvation = -2980.958082 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 315.023 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.49962 -36.86706 -34.07169 -33.37010 -32.41203 -32.20358 -27.92212 -26.19736 -24.16622 -24.02733 -22.24667 -21.92958 -19.74149 -17.69907 -17.16472 -16.78452 -16.36111 -15.65010 -15.54470 -15.07379 -14.86592 -14.24007 -14.03168 -13.68178 -13.12480 -12.99803 -12.87690 -12.53271 -12.30501 -12.15459 -12.02157 -11.73353 -11.55563 -11.46558 -11.23235 -11.06745 -10.86771 -10.76626 -10.55450 -10.40624 -10.34679 -9.78039 -9.66979 -9.37289 -8.53994 -8.51334 -7.86425 -6.16744 -4.21544 -0.01281 0.19354 0.64145 0.85159 1.34841 1.63057 1.81842 1.98712 3.27131 3.32068 3.34847 3.37730 3.46577 4.27312 4.34498 4.43098 4.43508 4.50435 4.80799 4.89406 5.06675 5.21279 5.24831 5.28576 5.29355 5.54513 5.73749 6.07585 6.23445 7.30318 7.37832 7.44899 7.76407 8.10389 8.23153 8.82018 9.44549 10.93836 Molecular weight = 315.02amu Principal moments of inertia in cm(-1) A = 0.027851 B = 0.002465 C = 0.002318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.106693 B =11355.923307 C =12077.513021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.111 4.111 3 S 0.010 5.990 4 C 0.019 3.981 5 N -0.279 5.279 6 N -0.281 5.281 7 C 0.035 3.965 8 S 0.017 5.983 9 C -0.095 4.095 10 C 0.025 3.975 11 H 0.115 0.885 12 C 0.231 3.769 13 N -0.453 5.453 14 C 0.038 3.962 15 C -0.531 4.531 16 H 0.058 0.942 17 C 0.065 3.935 18 N -0.889 5.889 19 Si 0.894 3.106 20 H -0.276 1.276 21 H -0.286 1.286 22 H -0.274 1.274 23 S 0.134 5.866 24 H 0.067 0.933 25 H 0.081 0.919 26 H 0.067 0.933 27 H 0.098 0.902 28 H 0.098 0.902 29 H 0.104 0.896 30 H 0.119 0.881 31 H 0.031 0.969 32 H 0.044 0.956 33 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.221 9.204 -2.379 26.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.261 4.261 3 S 0.237 5.763 4 C -0.382 4.382 5 N -0.109 5.109 6 N -0.112 5.112 7 C -0.364 4.364 8 S 0.248 5.752 9 C -0.246 4.246 10 C 0.001 3.999 11 H 0.133 0.867 12 C -0.087 4.087 13 N -0.129 5.129 14 C -0.002 4.002 15 C -0.570 4.570 16 H 0.077 0.923 17 C -0.138 4.138 18 N -0.527 5.527 19 Si 0.721 3.279 20 H -0.202 1.202 21 H -0.211 1.211 22 H -0.199 1.199 23 S 0.368 5.632 24 H 0.086 0.914 25 H 0.100 0.900 26 H 0.086 0.914 27 H 0.117 0.883 28 H 0.116 0.884 29 H 0.123 0.877 30 H 0.137 0.863 31 H 0.049 0.951 32 H 0.062 0.938 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -23.792 11.275 -0.916 26.344 hybrid contribution 1.175 -2.557 -0.436 2.847 sum -22.617 8.719 -1.351 24.277 Atomic orbital electron populations 1.21563 0.91261 1.03658 1.03337 1.23682 1.00106 0.94755 1.07566 1.85599 0.87040 1.12797 1.90841 1.30652 1.06013 0.95816 1.05675 1.75434 0.98499 1.20652 1.16332 1.75540 1.00603 1.17115 1.17916 1.30913 1.06434 0.95456 1.03592 1.85948 0.85730 1.14412 1.89130 1.24070 0.97028 0.94660 1.08869 1.19049 0.89722 1.02066 0.89071 0.86705 1.29093 0.92682 0.92341 0.94545 1.81170 1.09115 1.10979 1.11633 1.19235 0.95194 0.86403 0.99330 1.21037 0.90969 0.93119 1.51839 0.92329 1.24946 0.99030 0.95119 0.94739 1.69923 1.35724 0.97836 1.49209 0.86612 0.84985 0.77394 0.78862 1.20177 1.21126 1.19939 1.85548 0.92559 1.09713 1.75381 0.91352 0.89994 0.91376 0.88337 0.88372 0.87730 0.86301 0.95084 0.93754 0.92557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.61 9.92 37.16 0.37 -0.24 16 2 C -0.11 -0.77 6.26 37.16 0.23 -0.54 16 3 S 0.01 0.09 22.16 -107.50 -2.38 -2.30 16 4 C 0.02 0.22 7.82 51.84 0.41 0.63 16 5 N -0.28 -4.08 11.62 31.11 0.36 -3.72 16 6 N -0.28 -4.43 11.62 31.11 0.36 -4.07 16 7 C 0.03 0.49 7.82 51.84 0.41 0.89 16 8 S 0.02 0.23 21.57 -107.50 -2.32 -2.09 16 9 C -0.10 -1.41 4.96 37.15 0.18 -1.23 16 10 C 0.02 0.43 2.22 -93.41 -0.21 0.23 16 11 H 0.12 1.80 8.14 -51.92 -0.42 1.38 16 12 C 0.23 4.54 13.32 -20.66 -0.28 4.26 16 13 N -0.45 -9.67 18.56 42.28 0.78 -8.89 16 14 C 0.04 0.85 4.42 -27.89 -0.12 0.73 16 15 C -0.53 -13.66 8.60 -34.44 -0.30 -13.96 16 16 H 0.06 1.48 7.59 -52.49 -0.40 1.08 16 17 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 18 N -0.89 -24.98 13.29 55.43 0.74 -24.25 16 19 Si 0.89 20.86 29.54 -169.99 -5.02 15.84 16 20 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 21 H -0.29 -6.62 7.11 56.52 0.40 -6.21 16 22 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 23 S 0.13 1.52 23.39 -107.50 -2.51 -0.99 16 24 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 25 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 26 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 27 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.10 0.74 8.14 -51.92 -0.42 0.31 16 29 H 0.10 1.60 8.14 -51.92 -0.42 1.18 16 30 H 0.12 1.64 8.14 -51.93 -0.42 1.22 16 31 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.04 1.00 8.14 -51.92 -0.42 0.57 16 33 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 341.17 15.07 5.14 5.14 Total: -1.00 -30.35 341.17 -8.02 -38.36 By element: Atomic # 1 Polarization: -1.71 SS G_CDS: -3.76 Total: -5.47 kcal Atomic # 6 Polarization: -8.18 SS G_CDS: 0.60 Total: -7.58 kcal Atomic # 7 Polarization: -43.16 SS G_CDS: 2.24 Total: -40.92 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Atomic # 16 Polarization: 1.84 SS G_CDS: -7.22 Total: -5.38 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -30.35 -8.02 -38.36 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066398624.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.401 kcal (2) G-P(sol) polarization free energy of solvation -30.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.363 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds