Wall clock time and date at job start Tue Mar 31 2020 11:05:41
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 S 1.81407 * 109.47032 * 2 1
4 4 C 1.76196 * 103.00121 * 180.02562 * 3 2 1
5 5 N 1.29643 * 125.40660 * 0.02562 * 4 3 2
6 6 N 1.37765 * 115.61085 * 179.97438 * 5 4 3
7 7 C 1.29646 * 115.61223 * 0.02562 * 6 5 4
8 8 S 1.76199 * 125.40899 * 179.97438 * 7 6 5
9 9 C 1.81400 * 103.00024 * 0.02562 * 8 7 6
10 10 C 1.52993 * 109.47167 * 180.02562 * 9 8 7
11 11 H 1.09007 * 109.47314 * 304.99780 * 10 9 8
12 12 C 1.47198 * 109.47360 * 64.99659 * 10 9 8
13 13 N 9.29378 * 139.40953 * 338.37550 * 3 1 2
14 14 C 1.52995 * 109.47592 * 184.99841 * 10 9 8
15 15 C 1.50697 * 109.47870 * 174.99909 * 14 10 9
16 16 H 1.08001 * 119.99244 * 359.97438 * 15 14 10
17 17 C 1.37874 * 120.00183 * 180.02562 * 15 14 10
18 18 N 1.31512 * 120.00244 * 359.97438 * 17 15 14
19 19 Si 1.86801 * 119.99631 * 180.02562 * 17 15 14
20 20 H 1.48498 * 109.47676 * 59.99687 * 19 17 15
21 21 H 1.48503 * 109.46952 * 179.97438 * 19 17 15
22 22 H 1.48497 * 109.47384 * 299.99111 * 19 17 15
23 23 S 1.76039 * 109.18246 * 359.97438 * 7 6 5
24 24 H 1.08997 * 109.47532 * 59.99891 * 1 2 3
25 25 H 1.09002 * 109.47089 * 180.02562 * 1 2 3
26 26 H 1.08996 * 109.47423 * 299.99582 * 1 2 3
27 27 H 1.08996 * 109.47423 * 240.00418 * 2 1 3
28 28 H 1.09005 * 109.47378 * 119.99826 * 2 1 3
29 29 H 1.08999 * 109.46962 * 299.99801 * 9 8 7
30 30 H 1.08997 * 109.47383 * 59.99704 * 9 8 7
31 31 H 1.09000 * 109.47495 * 295.00358 * 14 10 9
32 32 H 1.09007 * 109.46921 * 54.99278 * 14 10 9
33 33 H 0.96997 * 119.99991 * 180.02562 * 18 17 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 16 2.1346 1.7103 0.0000
4 6 3.8854 1.5118 -0.0008
5 7 4.5126 0.3773 -0.0017
6 7 5.8880 0.4572 -0.0027
7 6 6.3796 1.6568 -0.0021
8 16 8.0956 2.0569 -0.0025
9 6 8.8943 0.4282 -0.0046
10 6 10.4139 0.6054 -0.0045
11 1 10.7065 1.2341 -0.8456
12 6 10.8335 1.2433 1.2540
13 7 11.1572 1.7364 2.2284
14 6 11.0870 -0.7626 -0.1320
15 6 12.5778 -0.5796 -0.2554
16 1 13.0026 0.4133 -0.2445
17 6 13.3991 -1.6796 -0.3833
18 7 12.8817 -2.8886 -0.3972
19 14 15.2470 -1.4526 -0.5356
20 1 15.7619 -0.7590 0.6723
21 1 15.9003 -2.7805 -0.6595
22 1 15.5482 -0.6381 -1.7402
23 16 5.0605 2.8225 -0.0008
24 1 -0.3634 0.5138 -0.8899
25 1 -0.3633 -1.0277 0.0005
26 1 -0.3634 0.5137 0.8900
27 1 1.8933 -0.5137 -0.8900
28 1 1.8933 -0.5138 0.8900
29 1 8.5934 -0.1252 0.8849
30 1 8.5925 -0.1234 -0.8950
31 1 10.8664 -1.3600 0.7526
32 1 10.7089 -1.2724 -1.0182
33 1 13.4597 -3.6624 -0.4868
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000066398624.mol2 33
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:05:41
Heat of formation + Delta-G solvation = 67.038300 kcal
Electronic energy + Delta-G solvation = -17540.540597 eV
Core-core repulsion = 14559.582515 eV
Total energy + Delta-G solvation = -2980.958082 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 315.023 amu
Computer time = 0.30 seconds
Orbital eigenvalues (eV)
-39.49962 -36.86706 -34.07169 -33.37010 -32.41203 -32.20358 -27.92212 -26.19736
-24.16622 -24.02733 -22.24667 -21.92958 -19.74149 -17.69907 -17.16472 -16.78452
-16.36111 -15.65010 -15.54470 -15.07379 -14.86592 -14.24007 -14.03168 -13.68178
-13.12480 -12.99803 -12.87690 -12.53271 -12.30501 -12.15459 -12.02157 -11.73353
-11.55563 -11.46558 -11.23235 -11.06745 -10.86771 -10.76626 -10.55450 -10.40624
-10.34679 -9.78039 -9.66979 -9.37289 -8.53994 -8.51334 -7.86425 -6.16744
-4.21544 -0.01281 0.19354 0.64145 0.85159 1.34841 1.63057 1.81842
1.98712 3.27131 3.32068 3.34847 3.37730 3.46577 4.27312 4.34498
4.43098 4.43508 4.50435 4.80799 4.89406 5.06675 5.21279 5.24831
5.28576 5.29355 5.54513 5.73749 6.07585 6.23445 7.30318 7.37832
7.44899 7.76407 8.10389 8.23153 8.82018 9.44549 10.93836
Molecular weight = 315.02amu
Principal moments of inertia in cm(-1)
A = 0.027851 B = 0.002465 C = 0.002318
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1005.106693 B =11355.923307 C =12077.513021
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.139 4.139
2 C -0.111 4.111
3 S 0.010 5.990
4 C 0.019 3.981
5 N -0.279 5.279
6 N -0.281 5.281
7 C 0.035 3.965
8 S 0.017 5.983
9 C -0.095 4.095
10 C 0.025 3.975
11 H 0.115 0.885
12 C 0.231 3.769
13 N -0.453 5.453
14 C 0.038 3.962
15 C -0.531 4.531
16 H 0.058 0.942
17 C 0.065 3.935
18 N -0.889 5.889
19 Si 0.894 3.106
20 H -0.276 1.276
21 H -0.286 1.286
22 H -0.274 1.274
23 S 0.134 5.866
24 H 0.067 0.933
25 H 0.081 0.919
26 H 0.067 0.933
27 H 0.098 0.902
28 H 0.098 0.902
29 H 0.104 0.896
30 H 0.119 0.881
31 H 0.031 0.969
32 H 0.044 0.956
33 H 0.265 0.735
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -24.221 9.204 -2.379 26.020
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.198 4.198
2 C -0.261 4.261
3 S 0.237 5.763
4 C -0.382 4.382
5 N -0.109 5.109
6 N -0.112 5.112
7 C -0.364 4.364
8 S 0.248 5.752
9 C -0.246 4.246
10 C 0.001 3.999
11 H 0.133 0.867
12 C -0.087 4.087
13 N -0.129 5.129
14 C -0.002 4.002
15 C -0.570 4.570
16 H 0.077 0.923
17 C -0.138 4.138
18 N -0.527 5.527
19 Si 0.721 3.279
20 H -0.202 1.202
21 H -0.211 1.211
22 H -0.199 1.199
23 S 0.368 5.632
24 H 0.086 0.914
25 H 0.100 0.900
26 H 0.086 0.914
27 H 0.117 0.883
28 H 0.116 0.884
29 H 0.123 0.877
30 H 0.137 0.863
31 H 0.049 0.951
32 H 0.062 0.938
33 H 0.074 0.926
Dipole moment (debyes) X Y Z Total
from point charges -23.792 11.275 -0.916 26.344
hybrid contribution 1.175 -2.557 -0.436 2.847
sum -22.617 8.719 -1.351 24.277
Atomic orbital electron populations
1.21563 0.91261 1.03658 1.03337 1.23682 1.00106 0.94755 1.07566
1.85599 0.87040 1.12797 1.90841 1.30652 1.06013 0.95816 1.05675
1.75434 0.98499 1.20652 1.16332 1.75540 1.00603 1.17115 1.17916
1.30913 1.06434 0.95456 1.03592 1.85948 0.85730 1.14412 1.89130
1.24070 0.97028 0.94660 1.08869 1.19049 0.89722 1.02066 0.89071
0.86705 1.29093 0.92682 0.92341 0.94545 1.81170 1.09115 1.10979
1.11633 1.19235 0.95194 0.86403 0.99330 1.21037 0.90969 0.93119
1.51839 0.92329 1.24946 0.99030 0.95119 0.94739 1.69923 1.35724
0.97836 1.49209 0.86612 0.84985 0.77394 0.78862 1.20177 1.21126
1.19939 1.85548 0.92559 1.09713 1.75381 0.91352 0.89994 0.91376
0.88337 0.88372 0.87730 0.86301 0.95084 0.93754 0.92557
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -0.61 9.92 37.16 0.37 -0.24 16
2 C -0.11 -0.77 6.26 37.16 0.23 -0.54 16
3 S 0.01 0.09 22.16 -107.50 -2.38 -2.30 16
4 C 0.02 0.22 7.82 51.84 0.41 0.63 16
5 N -0.28 -4.08 11.62 31.11 0.36 -3.72 16
6 N -0.28 -4.43 11.62 31.11 0.36 -4.07 16
7 C 0.03 0.49 7.82 51.84 0.41 0.89 16
8 S 0.02 0.23 21.57 -107.50 -2.32 -2.09 16
9 C -0.10 -1.41 4.96 37.15 0.18 -1.23 16
10 C 0.02 0.43 2.22 -93.41 -0.21 0.23 16
11 H 0.12 1.80 8.14 -51.92 -0.42 1.38 16
12 C 0.23 4.54 13.32 -20.66 -0.28 4.26 16
13 N -0.45 -9.67 18.56 42.28 0.78 -8.89 16
14 C 0.04 0.85 4.42 -27.89 -0.12 0.73 16
15 C -0.53 -13.66 8.60 -34.44 -0.30 -13.96 16
16 H 0.06 1.48 7.59 -52.49 -0.40 1.08 16
17 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16
18 N -0.89 -24.98 13.29 55.43 0.74 -24.25 16
19 Si 0.89 20.86 29.54 -169.99 -5.02 15.84 16
20 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16
21 H -0.29 -6.62 7.11 56.52 0.40 -6.21 16
22 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16
23 S 0.13 1.52 23.39 -107.50 -2.51 -0.99 16
24 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16
25 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16
26 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16
27 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16
28 H 0.10 0.74 8.14 -51.92 -0.42 0.31 16
29 H 0.10 1.60 8.14 -51.92 -0.42 1.18 16
30 H 0.12 1.64 8.14 -51.93 -0.42 1.22 16
31 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16
32 H 0.04 1.00 8.14 -51.92 -0.42 0.57 16
33 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16
LS Contribution 341.17 15.07 5.14 5.14
Total: -1.00 -30.35 341.17 -8.02 -38.36
By element:
Atomic # 1 Polarization: -1.71 SS G_CDS: -3.76 Total: -5.47 kcal
Atomic # 6 Polarization: -8.18 SS G_CDS: 0.60 Total: -7.58 kcal
Atomic # 7 Polarization: -43.16 SS G_CDS: 2.24 Total: -40.92 kcal
Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal
Atomic # 16 Polarization: 1.84 SS G_CDS: -7.22 Total: -5.38 kcal
Total LS contribution 5.14 Total: 5.14 kcal
Total: -30.35 -8.02 -38.36 kcal
The number of atoms in the molecule is 33
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000066398624.mol2 33
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 105.401 kcal
(2) G-P(sol) polarization free energy of solvation -30.347 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.054 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.015 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.363 kcal
(6) G-S(sol) free energy of system = (1) + (5) 67.038 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.30 seconds