Wall clock time and date at job start Tue Mar 31 2020 11:05:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 S 1.81407 * 109.47032 * 2 1 4 4 C 1.76196 * 103.00121 * 180.02562 * 3 2 1 5 5 N 1.29643 * 125.40660 * 0.02562 * 4 3 2 6 6 N 1.37765 * 115.61085 * 179.97438 * 5 4 3 7 7 C 1.29646 * 115.61223 * 0.02562 * 6 5 4 8 8 S 1.76199 * 125.40899 * 179.97438 * 7 6 5 9 9 C 1.81400 * 103.00024 * 0.02562 * 8 7 6 10 10 C 1.52993 * 109.47167 * 180.02562 * 9 8 7 11 11 H 1.09007 * 109.47314 * 304.99780 * 10 9 8 12 12 C 1.47198 * 109.47360 * 64.99659 * 10 9 8 13 13 N 9.29378 * 139.40953 * 338.37550 * 3 1 2 14 14 C 1.52995 * 109.47592 * 184.99841 * 10 9 8 15 15 C 1.50697 * 109.47870 * 174.99909 * 14 10 9 16 16 H 1.08001 * 119.99244 * 359.97438 * 15 14 10 17 17 C 1.37874 * 120.00183 * 180.02562 * 15 14 10 18 18 N 1.31512 * 120.00244 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99631 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47676 * 59.99687 * 19 17 15 21 21 H 1.48503 * 109.46952 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.47384 * 299.99111 * 19 17 15 23 23 S 1.76039 * 109.18246 * 359.97438 * 7 6 5 24 24 H 1.08997 * 109.47532 * 59.99891 * 1 2 3 25 25 H 1.09002 * 109.47089 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47423 * 299.99582 * 1 2 3 27 27 H 1.08996 * 109.47423 * 240.00418 * 2 1 3 28 28 H 1.09005 * 109.47378 * 119.99826 * 2 1 3 29 29 H 1.08999 * 109.46962 * 299.99801 * 9 8 7 30 30 H 1.08997 * 109.47383 * 59.99704 * 9 8 7 31 31 H 1.09000 * 109.47495 * 295.00358 * 14 10 9 32 32 H 1.09007 * 109.46921 * 54.99278 * 14 10 9 33 33 H 0.96997 * 119.99991 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7103 0.0000 4 6 3.8854 1.5118 -0.0008 5 7 4.5126 0.3773 -0.0017 6 7 5.8880 0.4572 -0.0027 7 6 6.3796 1.6568 -0.0021 8 16 8.0956 2.0569 -0.0025 9 6 8.8943 0.4282 -0.0046 10 6 10.4139 0.6054 -0.0045 11 1 10.7065 1.2341 -0.8456 12 6 10.8335 1.2433 1.2540 13 7 11.1572 1.7364 2.2284 14 6 11.0870 -0.7626 -0.1320 15 6 12.5778 -0.5796 -0.2554 16 1 13.0026 0.4133 -0.2445 17 6 13.3991 -1.6796 -0.3833 18 7 12.8817 -2.8886 -0.3972 19 14 15.2470 -1.4526 -0.5356 20 1 15.7619 -0.7590 0.6723 21 1 15.9003 -2.7805 -0.6595 22 1 15.5482 -0.6381 -1.7402 23 16 5.0605 2.8225 -0.0008 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5137 0.8900 27 1 1.8933 -0.5137 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 8.5934 -0.1252 0.8849 30 1 8.5925 -0.1234 -0.8950 31 1 10.8664 -1.3600 0.7526 32 1 10.7089 -1.2724 -1.0182 33 1 13.4597 -3.6624 -0.4868 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000066398624.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:40 Heat of formation + Delta-G solvation = 50.015760 kcal Electronic energy + Delta-G solvation = -17541.278749 eV Core-core repulsion = 14559.582515 eV Total energy + Delta-G solvation = -2981.696235 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 315.023 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.51328 -38.45709 -35.78711 -34.19666 -33.85766 -33.24911 -29.64627 -27.18948 -25.80127 -24.51195 -23.76262 -23.17035 -20.70544 -18.83973 -18.51394 -18.43572 -17.47769 -16.76819 -16.55164 -16.27359 -15.72101 -15.54626 -15.45282 -14.68156 -14.65961 -14.34586 -14.05063 -13.75883 -13.44574 -13.25637 -13.10010 -13.03285 -12.84646 -12.71248 -12.54363 -12.47748 -12.27335 -12.17160 -11.94412 -11.54035 -11.37195 -11.36255 -11.21494 -10.72998 -10.56460 -9.37132 -8.80595 -8.20751 -6.29911 -0.92912 -0.77954 -0.30071 -0.09757 0.38897 0.79274 0.81809 0.97943 1.42514 1.44007 1.50920 1.80627 1.85812 2.41352 2.99892 3.16233 3.29565 3.71149 3.85118 3.92740 3.95713 4.01034 4.42470 4.47434 4.63432 4.75663 4.86906 4.87921 5.21486 5.42895 5.52866 5.75679 6.13445 6.45234 6.63847 6.83545 7.39116 8.89958 Molecular weight = 315.02amu Principal moments of inertia in cm(-1) A = 0.027851 B = 0.002465 C = 0.002318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.106693 B =11355.923307 C =12077.513021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.112 4.112 3 S 0.039 5.961 4 C 0.011 3.989 5 N -0.310 5.310 6 N -0.310 5.310 7 C 0.016 3.984 8 S 0.040 5.960 9 C -0.093 4.093 10 C 0.037 3.963 11 H 0.140 0.860 12 C 0.242 3.758 13 N -0.483 5.483 14 C 0.042 3.958 15 C -0.540 4.540 16 H 0.061 0.939 17 C 0.012 3.988 18 N -0.923 5.923 19 Si 0.950 3.050 20 H -0.280 1.280 21 H -0.284 1.284 22 H -0.261 1.261 23 S 0.177 5.823 24 H 0.075 0.925 25 H 0.096 0.904 26 H 0.074 0.926 27 H 0.093 0.907 28 H 0.091 0.909 29 H 0.096 0.904 30 H 0.129 0.871 31 H 0.005 0.995 32 H 0.041 0.959 33 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.612 10.603 -3.008 27.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.262 4.262 3 S 0.267 5.733 4 C -0.387 4.387 5 N -0.141 5.141 6 N -0.141 5.141 7 C -0.383 4.383 8 S 0.270 5.730 9 C -0.244 4.244 10 C 0.014 3.986 11 H 0.157 0.843 12 C -0.075 4.075 13 N -0.160 5.160 14 C 0.002 3.998 15 C -0.578 4.578 16 H 0.079 0.921 17 C -0.188 4.188 18 N -0.563 5.563 19 Si 0.776 3.224 20 H -0.206 1.206 21 H -0.210 1.210 22 H -0.186 1.186 23 S 0.412 5.588 24 H 0.094 0.906 25 H 0.114 0.886 26 H 0.093 0.907 27 H 0.112 0.888 28 H 0.110 0.890 29 H 0.114 0.886 30 H 0.148 0.852 31 H 0.024 0.976 32 H 0.060 0.940 33 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -25.191 12.698 -1.550 28.253 hybrid contribution 1.397 -2.937 -0.227 3.260 sum -23.793 9.761 -1.777 25.779 Atomic orbital electron populations 1.21601 0.89028 1.04800 1.04005 1.23825 1.01818 0.93522 1.07060 1.85549 0.84219 1.14026 1.89536 1.31251 1.07967 0.95610 1.03899 1.75408 0.98093 1.21801 1.18784 1.75485 1.01717 1.18321 1.18623 1.31001 1.07086 0.96194 1.04030 1.85738 0.85644 1.12176 1.89432 1.23837 0.95316 0.96171 1.09097 1.18895 0.91220 0.99579 0.88923 0.84251 1.29463 0.91807 0.91701 0.94554 1.81170 1.10180 1.12063 1.12549 1.19031 0.94102 0.88739 0.97900 1.21481 0.92846 0.93047 1.50466 0.92109 1.25723 1.03065 0.95061 0.94902 1.70029 1.37019 0.98484 1.50773 0.85719 0.80379 0.77370 0.78954 1.20562 1.20986 1.18552 1.85333 0.90873 1.07999 1.74577 0.90620 0.88589 0.90738 0.88809 0.88987 0.88568 0.85244 0.97643 0.94036 0.92659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.87 9.92 71.98 0.71 -0.15 16 2 C -0.11 -1.39 6.26 71.98 0.45 -0.94 16 3 S 0.04 0.60 22.16 -56.49 -1.25 -0.66 16 4 C 0.01 0.26 7.82 130.57 1.02 1.28 16 5 N -0.31 -8.92 11.62 -55.48 -0.64 -9.57 16 6 N -0.31 -9.71 11.62 -55.47 -0.64 -10.36 16 7 C 0.02 0.43 7.82 130.57 1.02 1.45 16 8 S 0.04 1.03 21.57 -56.49 -1.22 -0.19 16 9 C -0.09 -2.71 4.96 71.98 0.36 -2.35 16 10 C 0.04 1.27 2.22 -12.60 -0.03 1.25 16 11 H 0.14 4.12 8.14 -2.38 -0.02 4.10 16 12 C 0.24 9.37 13.32 89.41 1.19 10.56 16 13 N -0.48 -20.46 18.56 20.04 0.37 -20.09 16 14 C 0.04 1.90 4.42 29.85 0.13 2.03 16 15 C -0.54 -27.68 8.60 25.60 0.22 -27.46 16 16 H 0.06 3.03 7.59 -2.91 -0.02 3.00 16 17 C 0.01 0.63 5.46 84.65 0.46 1.10 16 18 N -0.92 -52.54 13.29 21.45 0.28 -52.26 16 19 Si 0.95 42.62 29.54 68.60 2.03 44.65 16 20 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 21 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 22 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 23 S 0.18 3.77 23.39 -56.49 -1.32 2.45 16 24 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 25 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 26 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 27 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.10 2.97 8.14 -2.39 -0.02 2.95 16 30 H 0.13 3.50 8.14 -2.39 -0.02 3.48 16 31 H 0.01 0.26 8.14 -2.39 -0.02 0.24 16 32 H 0.04 1.88 8.14 -2.38 -0.02 1.86 16 33 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 Total: -1.00 -64.78 341.17 4.28 -60.50 By element: Atomic # 1 Polarization: -2.38 SS G_CDS: 1.13 Total: -1.25 kcal Atomic # 6 Polarization: -18.78 SS G_CDS: 5.54 Total: -13.24 kcal Atomic # 7 Polarization: -91.63 SS G_CDS: -0.63 Total: -92.27 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.65 kcal Atomic # 16 Polarization: 5.39 SS G_CDS: -3.79 Total: 1.60 kcal Total: -64.78 4.28 -60.50 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066398624.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.516 kcal (2) G-P(sol) polarization free energy of solvation -64.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.500 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds