Wall clock time and date at job start Tue Mar 31 2020 10:42:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46501 * 109.47071 * 2 1 4 4 C 1.36890 * 120.00275 * 91.64251 * 3 2 1 5 5 H 1.07997 * 120.00168 * 225.97267 * 4 3 2 6 6 C 1.39032 * 119.99944 * 45.96751 * 4 3 2 7 7 N 1.31379 * 120.00240 * 31.40683 * 6 4 3 8 8 Si 1.86801 * 120.00129 * 211.40724 * 6 4 3 9 9 H 1.48501 * 109.46936 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.47328 * 120.00035 * 8 6 4 11 11 H 1.48494 * 109.47072 * 240.00022 * 8 6 4 12 12 C 1.34772 * 119.99826 * 271.63823 * 3 2 1 13 13 O 1.21609 * 120.00058 * 187.27081 * 12 3 2 14 14 C 1.47617 * 120.00127 * 7.27674 * 12 3 2 15 15 C 1.39738 * 120.12136 * 189.70698 * 14 12 3 16 16 C 1.37805 * 119.89175 * 179.97438 * 15 14 12 17 17 C 1.38670 * 120.13812 * 0.02562 * 16 15 14 18 18 F 1.35091 * 119.87903 * 179.97438 * 17 16 15 19 19 C 1.38729 * 120.24107 * 359.97438 * 17 16 15 20 20 Br 1.89099 * 119.94656 * 180.02562 * 19 17 16 21 21 C 1.37928 * 120.10809 * 359.73982 * 19 17 16 22 22 H 1.09003 * 109.46673 * 314.64020 * 1 2 3 23 23 H 1.08994 * 109.46994 * 74.63680 * 1 2 3 24 24 H 1.08995 * 109.46944 * 194.64158 * 1 2 3 25 25 H 1.09003 * 109.47073 * 119.99851 * 2 1 3 26 26 H 1.08999 * 109.47215 * 239.99916 * 2 1 3 27 27 H 0.96992 * 120.00278 * 179.97438 * 7 6 4 28 28 H 1.08006 * 120.05081 * 359.97438 * 15 14 12 29 29 H 1.08000 * 119.93166 * 179.97438 * 16 15 14 30 30 H 1.08000 * 120.07090 * 180.25346 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2785 2.0153 1.1850 5 1 1.9263 3.0233 1.3468 6 6 2.9962 1.3615 2.1802 7 7 3.9172 0.4824 1.8563 8 14 2.6509 1.7330 3.9781 9 1 1.5751 2.7520 4.0752 10 1 2.2184 0.4902 4.6662 11 1 3.8843 2.2518 4.6220 12 6 2.2115 2.0276 -1.1667 13 8 2.7399 3.1229 -1.1748 14 6 1.7815 1.4062 -2.4348 15 6 2.1575 1.9721 -3.6559 16 6 1.7539 1.3878 -4.8369 17 6 0.9754 0.2404 -4.8156 18 9 0.5823 -0.3278 -5.9764 19 6 0.5989 -0.3261 -3.6065 20 35 -0.4621 -1.8913 -3.5872 21 6 1.0022 0.2470 -2.4185 22 1 -0.3633 0.7221 0.7313 23 1 -0.3633 0.2723 -0.9909 24 1 -0.3633 -0.9943 0.2598 25 1 1.8933 -0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 4.4182 0.0266 2.5506 28 1 2.7634 2.8660 -3.6740 29 1 2.0437 1.8249 -5.7810 30 1 0.7122 -0.1969 -1.4776 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079733522.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:42:47 Heat of formation + Delta-G solvation = -1.189326 kcal Electronic energy + Delta-G solvation = -18580.509922 eV Core-core repulsion = 15338.863078 eV Total energy + Delta-G solvation = -3241.646844 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 315.001 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -50.11515 -41.61908 -39.02009 -37.40427 -34.72801 -33.52526 -32.26982 -31.20153 -30.21317 -27.28654 -24.65300 -24.13535 -23.76121 -21.20523 -19.13285 -18.85996 -18.21580 -17.55700 -16.97754 -16.86502 -16.48488 -15.96750 -15.63240 -15.32625 -14.94772 -14.32771 -14.07338 -13.92830 -13.73425 -13.41384 -13.12371 -12.90727 -12.75421 -12.44219 -12.11732 -12.01027 -11.98600 -11.50975 -11.38678 -10.93819 -10.49598 -9.99068 -9.82417 -9.48462 -8.46062 -6.14532 -0.44337 -0.08113 0.36772 1.36864 1.44132 1.58433 1.81367 2.26151 2.58851 2.89276 2.94191 2.94664 3.48909 3.72165 3.90639 4.05658 4.13823 4.29281 4.38848 4.58128 4.67145 4.72832 4.83272 4.92347 5.07018 5.21724 5.37922 5.44942 5.53926 6.19440 6.46979 7.11590 7.29585 7.97166 8.57922 Molecular weight = 315.00amu Principal moments of inertia in cm(-1) A = 0.022337 B = 0.005119 C = 0.004345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.234993 B = 5468.215877 C = 6442.755643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.083 3.917 3 N -0.433 5.433 4 C -0.360 4.360 5 H 0.067 0.933 6 C 0.020 3.980 7 N -0.870 5.870 8 Si 0.976 3.024 9 H -0.264 1.264 10 H -0.260 1.260 11 H -0.281 1.281 12 C 0.479 3.521 13 O -0.621 6.621 14 C -0.135 4.135 15 C -0.036 4.036 16 C -0.141 4.141 17 C 0.131 3.869 18 F -0.122 7.122 19 C -0.145 4.145 20 Br -0.016 7.016 21 C -0.120 4.120 22 H 0.067 0.933 23 H 0.083 0.917 24 H 0.101 0.899 25 H 0.074 0.926 26 H 0.085 0.915 27 H 0.277 0.723 28 H 0.144 0.856 29 H 0.181 0.819 30 H 0.229 0.771 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.500 -8.087 -10.405 16.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C -0.040 4.040 3 N -0.150 5.150 4 C -0.487 4.487 5 H 0.084 0.916 6 C -0.187 4.187 7 N -0.504 5.504 8 Si 0.798 3.202 9 H -0.188 1.188 10 H -0.184 1.184 11 H -0.207 1.207 12 C 0.270 3.730 13 O -0.509 6.509 14 C -0.139 4.139 15 C -0.055 4.055 16 C -0.160 4.160 17 C 0.109 3.891 18 F -0.100 7.100 19 C -0.225 4.225 20 Br 0.069 6.931 21 C -0.138 4.138 22 H 0.086 0.914 23 H 0.101 0.899 24 H 0.120 0.880 25 H 0.092 0.908 26 H 0.102 0.898 27 H 0.087 0.913 28 H 0.162 0.838 29 H 0.199 0.801 30 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -9.515 -8.334 -10.319 16.325 hybrid contribution 0.568 0.623 0.627 1.051 sum -8.947 -7.712 -9.693 15.280 Atomic orbital electron populations 1.22693 0.94353 1.04885 1.03148 1.22208 0.94628 0.84205 1.02971 1.43607 1.54938 1.12453 1.04027 1.19274 1.36887 1.01677 0.90834 0.91573 1.26285 0.91643 0.96170 1.04617 1.70198 1.16632 1.27310 1.36222 0.85187 0.78561 0.79156 0.77249 1.18768 1.18407 1.20682 1.18919 0.82263 0.87386 0.84441 1.90563 1.48813 1.24202 1.87281 1.20277 1.01564 0.97613 0.94458 1.21361 0.95515 0.98576 0.90097 1.21273 0.99429 0.94828 1.00487 1.17714 0.97319 0.93603 0.80432 1.91542 1.88749 1.83876 1.45842 1.21950 1.06780 0.99119 0.94632 1.96704 1.66700 1.30432 1.99245 1.24378 0.93544 0.94065 1.01842 0.91437 0.89901 0.88016 0.90809 0.89758 0.91304 0.83775 0.80146 0.75595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -6.03 9.16 71.98 0.66 -5.37 16 2 C 0.08 3.32 5.27 86.38 0.45 3.78 16 3 N -0.43 -21.77 2.45 -690.85 -1.70 -23.47 16 4 C -0.36 -19.83 8.62 84.09 0.73 -19.10 16 5 H 0.07 3.88 8.00 -2.91 -0.02 3.86 16 6 C 0.02 1.03 4.58 84.95 0.39 1.42 16 7 N -0.87 -46.60 12.84 21.68 0.28 -46.32 16 8 Si 0.98 40.09 29.65 68.60 2.03 42.12 16 9 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 10 H -0.26 -9.86 7.11 99.48 0.71 -9.16 16 11 H -0.28 -11.54 7.11 99.48 0.71 -10.83 16 12 C 0.48 24.25 7.55 86.72 0.65 24.90 16 13 O -0.62 -36.36 16.36 -4.06 -0.07 -36.43 16 14 C -0.13 -5.28 5.76 -20.09 -0.12 -5.40 16 15 C -0.04 -1.19 9.59 22.53 0.22 -0.97 16 16 C -0.14 -3.62 10.01 22.27 0.22 -3.40 16 17 C 0.13 3.54 7.28 22.49 0.16 3.70 16 18 F -0.12 -3.06 16.72 44.97 0.75 -2.31 16 19 C -0.14 -4.15 6.22 22.31 0.14 -4.01 16 20 Br -0.02 -0.38 33.27 -20.37 -0.68 -1.06 16 21 C -0.12 -3.96 5.98 22.55 0.13 -3.83 16 22 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 23 H 0.08 2.44 5.11 -2.39 -0.01 2.43 16 24 H 0.10 2.42 8.14 -2.39 -0.02 2.40 16 25 H 0.07 3.20 6.58 -2.39 -0.02 3.18 16 26 H 0.08 3.18 5.12 -2.39 -0.01 3.17 16 27 H 0.28 13.65 8.31 -92.71 -0.77 12.88 16 28 H 0.14 4.80 7.68 -2.91 -0.02 4.78 16 29 H 0.18 3.25 8.06 -2.91 -0.02 3.23 16 30 H 0.23 7.23 1.33 -56.50 -0.07 7.15 16 Total: -1.00 -65.81 279.11 5.40 -60.42 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: 1.13 Total: 15.33 kcal Atomic # 6 Polarization: -11.92 SS G_CDS: 3.64 Total: -8.27 kcal Atomic # 7 Polarization: -68.38 SS G_CDS: -1.42 Total: -69.79 kcal Atomic # 8 Polarization: -36.36 SS G_CDS: -0.07 Total: -36.43 kcal Atomic # 9 Polarization: -3.06 SS G_CDS: 0.75 Total: -2.31 kcal Atomic # 14 Polarization: 40.09 SS G_CDS: 2.03 Total: 42.12 kcal Atomic # 35 Polarization: -0.38 SS G_CDS: -0.68 Total: -1.06 kcal Total: -65.81 5.40 -60.42 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079733522.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.229 kcal (2) G-P(sol) polarization free energy of solvation -65.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds