Wall clock time and date at job start Tue Mar 31 2020 10:42:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.47883 * 2 1 4 4 C 1.50704 * 109.47218 * 120.00317 * 2 1 3 5 5 H 1.07999 * 120.00463 * 119.99276 * 4 2 1 6 6 C 1.37879 * 119.99717 * 299.99667 * 4 2 1 7 7 N 1.31518 * 120.00060 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00038 * 180.02562 * 6 4 2 9 9 H 1.48491 * 109.47364 * 359.97438 * 8 6 4 10 10 H 1.48496 * 109.47309 * 120.00017 * 8 6 4 11 11 H 1.48504 * 109.46796 * 239.99779 * 8 6 4 12 12 N 1.46505 * 109.46959 * 239.99796 * 2 1 3 13 13 C 1.34773 * 120.00095 * 85.00501 * 12 2 1 14 14 O 1.21583 * 119.99900 * 359.97438 * 13 12 2 15 15 C 1.47637 * 120.00162 * 179.72282 * 13 12 2 16 16 C 1.39889 * 120.17028 * 89.99786 * 15 13 12 17 17 F 1.35100 * 120.10716 * 359.97438 * 16 15 13 18 18 C 1.38254 * 119.78507 * 179.71816 * 16 15 13 19 19 C 1.38278 * 120.14360 * 0.53938 * 18 16 15 20 20 C 1.38357 * 120.35997 * 359.75738 * 19 18 16 21 21 C 1.38033 * 120.20678 * 359.96306 * 20 19 18 22 22 Br 1.89106 * 120.07483 * 179.97438 * 21 20 19 23 23 H 1.08994 * 109.47461 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.46891 * 300.00245 * 1 2 3 25 25 H 1.09004 * 109.46940 * 59.99560 * 1 2 3 26 26 H 0.97000 * 120.00268 * 179.97438 * 7 6 4 27 27 H 0.97000 * 119.99792 * 265.00066 * 12 2 1 28 28 H 1.07997 * 119.92611 * 180.27583 * 18 16 15 29 29 H 1.08008 * 119.81691 * 179.73710 * 19 18 16 30 30 H 1.07997 * 119.89695 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6531 -1.5886 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 0.9436 0.8302 2.6034 8 14 2.3225 -1.1196 4.0079 9 1 3.1473 -2.2863 3.6038 10 1 3.1472 -0.1858 4.8160 11 1 1.1677 -1.5865 4.8165 12 7 2.0182 -0.6907 -1.1962 13 6 2.1470 -0.0184 -2.3571 14 8 1.8575 1.1612 -2.4119 15 6 2.6449 -0.7129 -3.5611 16 6 1.7481 -1.3405 -4.4321 17 9 0.4221 -1.3139 -4.1744 18 6 2.2225 -1.9835 -5.5603 19 6 3.5799 -2.0163 -5.8217 20 6 4.4728 -1.4028 -4.9610 21 6 4.0147 -0.7517 -3.8334 22 35 5.2385 0.0848 -2.6593 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 0.7090 1.1614 3.4844 27 1 2.2489 -1.6319 -1.1526 28 1 1.5317 -2.4650 -6.2366 29 1 3.9452 -2.5238 -6.7024 30 1 5.5315 -1.4334 -5.1723 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000176271946.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:42:23 Heat of formation + Delta-G solvation = -76.907584 kcal Electronic energy + Delta-G solvation = -18222.617574 eV Core-core repulsion = 14977.687340 eV Total energy + Delta-G solvation = -3244.930234 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 315.001 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -50.14174 -41.09776 -39.44994 -36.78861 -34.42634 -33.55479 -32.35210 -30.68424 -30.28015 -27.38233 -25.37247 -23.65782 -22.94373 -21.42249 -19.65637 -18.45723 -17.86331 -17.77746 -17.38612 -16.79015 -16.48362 -15.87141 -15.50631 -15.22738 -14.80326 -14.52688 -14.39389 -14.01588 -13.75236 -13.17662 -13.04373 -12.92325 -12.79205 -12.51038 -12.32303 -12.14789 -11.91101 -11.40530 -11.15601 -11.01264 -10.63483 -10.11334 -9.90099 -9.85777 -8.19610 -6.37046 -0.32190 -0.14086 0.40577 1.42946 1.43754 1.48761 1.56503 2.18501 2.31608 2.47834 3.00259 3.10926 3.58554 3.75226 3.86612 4.10707 4.27696 4.64100 4.70704 4.85087 4.85995 4.99532 5.03212 5.09445 5.35577 5.51980 5.59252 5.61406 5.81919 6.03780 6.67329 6.75378 7.21368 7.38145 8.87407 Molecular weight = 315.00amu Principal moments of inertia in cm(-1) A = 0.017157 B = 0.005558 C = 0.004649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.590933 B = 5036.271463 C = 6020.707927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.273 3.727 3 H 0.002 0.998 4 C -0.544 4.544 5 H 0.073 0.927 6 C 0.016 3.984 7 N -0.917 5.917 8 Si 0.973 3.027 9 H -0.260 1.260 10 H -0.282 1.282 11 H -0.277 1.277 12 N -0.686 5.686 13 C 0.549 3.451 14 O -0.582 6.582 15 C -0.158 4.158 16 C 0.110 3.890 17 F -0.142 7.142 18 C -0.125 4.125 19 C -0.049 4.049 20 C -0.092 4.092 21 C -0.054 4.054 22 Br -0.041 7.041 23 H 0.040 0.960 24 H 0.071 0.929 25 H 0.009 0.991 26 H 0.266 0.734 27 H 0.402 0.598 28 H 0.182 0.818 29 H 0.200 0.800 30 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.457 -9.969 -18.418 22.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.170 3.830 3 H 0.020 0.980 4 C -0.582 4.582 5 H 0.091 0.909 6 C -0.184 4.184 7 N -0.555 5.555 8 Si 0.798 3.202 9 H -0.184 1.184 10 H -0.208 1.208 11 H -0.202 1.202 12 N -0.333 5.333 13 C 0.334 3.666 14 O -0.463 6.463 15 C -0.164 4.164 16 C 0.090 3.910 17 F -0.121 7.121 18 C -0.144 4.144 19 C -0.067 4.067 20 C -0.112 4.112 21 C -0.135 4.135 22 Br 0.046 6.954 23 H 0.059 0.941 24 H 0.090 0.910 25 H 0.028 0.972 26 H 0.075 0.925 27 H 0.237 0.763 28 H 0.200 0.800 29 H 0.217 0.783 30 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 9.573 -8.699 -17.809 22.011 hybrid contribution -0.581 -0.210 1.130 1.288 sum 8.992 -8.909 -16.679 20.938 Atomic orbital electron populations 1.21909 0.98204 0.99528 0.99620 1.18423 0.91094 0.92017 0.81420 0.98034 1.21493 1.32609 1.13520 0.90537 0.90939 1.25795 0.94807 0.95562 1.02267 1.70057 1.36961 1.23886 1.24640 0.85275 0.78153 0.78517 0.78282 1.18396 1.20842 1.20250 1.46273 1.63775 1.13922 1.09371 1.18439 0.77772 0.86442 0.83965 1.90743 1.52616 1.17327 1.85580 1.19967 0.94301 1.04205 0.97940 1.17995 0.76690 0.99897 0.96439 1.91527 1.31662 1.94722 1.94160 1.21697 0.98799 0.99088 0.94772 1.21755 0.90366 0.95144 0.99445 1.21618 1.03250 0.95394 0.90940 1.21871 0.90625 1.02483 0.98481 1.96847 1.56669 1.79614 1.62312 0.94069 0.91009 0.97234 0.92453 0.76329 0.80049 0.78257 0.80661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -7.16 9.26 71.98 0.67 -6.49 16 2 C 0.27 14.88 2.56 44.24 0.11 15.00 16 3 H 0.00 0.11 7.58 -2.39 -0.02 0.09 16 4 C -0.54 -29.62 8.73 25.60 0.22 -29.40 16 5 H 0.07 3.72 7.74 -2.91 -0.02 3.70 16 6 C 0.02 0.86 5.30 84.65 0.45 1.31 16 7 N -0.92 -53.54 11.32 21.45 0.24 -53.30 16 8 Si 0.97 42.74 29.54 68.60 2.03 44.76 16 9 H -0.26 -10.81 7.11 99.48 0.71 -10.11 16 10 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 11 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 12 N -0.69 -31.34 5.07 -449.17 -2.28 -33.62 16 13 C 0.55 24.64 5.73 86.73 0.50 25.13 16 14 O -0.58 -31.42 16.77 -3.98 -0.07 -31.48 16 15 C -0.16 -5.35 5.64 -20.04 -0.11 -5.46 16 16 C 0.11 3.11 7.29 22.67 0.17 3.28 16 17 F -0.14 -4.72 16.83 44.97 0.76 -3.96 16 18 C -0.12 -2.01 10.01 22.28 0.22 -1.78 16 19 C -0.05 -0.53 10.03 22.31 0.22 -0.31 16 20 C -0.09 -1.51 9.77 22.25 0.22 -1.29 16 21 C -0.05 -1.48 6.26 22.58 0.14 -1.34 16 22 Br -0.04 -1.26 32.65 -20.37 -0.66 -1.92 16 23 H 0.04 2.02 8.14 -2.39 -0.02 2.00 16 24 H 0.07 4.13 6.07 -2.39 -0.01 4.11 16 25 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 26 H 0.27 14.61 8.31 -92.71 -0.77 13.84 16 27 H 0.40 16.13 8.52 -92.71 -0.79 15.34 16 28 H 0.18 1.64 8.06 -2.91 -0.02 1.61 16 29 H 0.20 0.13 8.06 -2.91 -0.02 0.10 16 30 H 0.18 1.75 8.06 -2.91 -0.02 1.73 16 Total: -1.00 -73.98 292.75 3.22 -70.76 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: 0.40 Total: 10.11 kcal Atomic # 6 Polarization: -4.15 SS G_CDS: 2.81 Total: -1.35 kcal Atomic # 7 Polarization: -84.88 SS G_CDS: -2.03 Total: -86.92 kcal Atomic # 8 Polarization: -31.42 SS G_CDS: -0.07 Total: -31.48 kcal Atomic # 9 Polarization: -4.72 SS G_CDS: 0.76 Total: -3.96 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.76 kcal Atomic # 35 Polarization: -1.26 SS G_CDS: -0.66 Total: -1.92 kcal Total: -73.98 3.22 -70.76 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176271946.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.146 kcal (2) G-P(sol) polarization free energy of solvation -73.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds