Wall clock time and date at job start Tue Mar 31 2020 10:42:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47018 * 2 1 4 4 C 1.50697 * 109.47124 * 240.00004 * 2 1 3 5 5 H 1.08002 * 119.99822 * 239.99854 * 4 2 1 6 6 C 1.37875 * 120.00031 * 60.00279 * 4 2 1 7 7 N 1.31511 * 119.99809 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99885 * 179.97438 * 6 4 2 9 9 H 1.48495 * 109.47215 * 89.99799 * 8 6 4 10 10 H 1.48508 * 109.47067 * 209.99624 * 8 6 4 11 11 H 1.48497 * 109.47271 * 329.99727 * 8 6 4 12 12 N 1.46498 * 109.47168 * 119.99731 * 2 1 3 13 13 C 1.34779 * 120.00451 * 275.00159 * 12 2 1 14 14 O 1.21574 * 119.99509 * 0.02562 * 13 12 2 15 15 C 1.47690 * 120.00174 * 179.97438 * 13 12 2 16 16 C 1.39667 * 120.16373 * 359.97438 * 15 13 12 17 17 C 1.37853 * 119.89787 * 179.71849 * 16 15 13 18 18 C 1.38450 * 120.22803 * 0.28967 * 17 16 15 19 19 C 1.38279 * 120.33157 * 0.02562 * 18 17 16 20 20 Br 1.89094 * 119.95567 * 180.02562 * 19 18 17 21 21 C 1.38408 * 120.09587 * 359.97438 * 19 18 17 22 22 F 1.35096 * 120.11621 * 180.02562 * 21 19 18 23 23 H 1.08997 * 109.47093 * 60.00307 * 1 2 3 24 24 H 1.09003 * 109.47018 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47595 * 299.99889 * 1 2 3 26 26 H 0.97008 * 119.99933 * 180.02562 * 7 6 4 27 27 H 0.97004 * 119.99814 * 95.00264 * 12 2 1 28 28 H 1.08002 * 120.05326 * 0.02562 * 16 15 13 29 29 H 1.08005 * 119.89004 * 180.30175 * 17 16 15 30 30 H 1.08001 * 119.83927 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8297 -2.6033 8 14 2.3225 -1.1195 -4.0078 9 1 1.3449 -2.1615 -4.4123 10 1 2.4873 -0.1401 -5.1120 11 1 3.6309 -1.7565 -3.7119 12 7 2.0183 -0.6905 1.1962 13 6 2.1470 -0.0182 2.3572 14 8 1.8574 1.1613 2.4118 15 6 2.6388 -0.7146 3.5632 16 6 2.9710 -2.0699 3.5046 17 6 3.4350 -2.7130 4.6322 18 6 3.5673 -2.0215 5.8243 19 6 3.2350 -0.6811 5.8946 20 35 3.4205 0.2532 7.5281 21 6 2.7678 -0.0220 4.7708 22 9 2.4435 1.2877 4.8389 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 0.7082 1.1609 -3.4844 27 1 2.2491 -1.6317 1.1526 28 1 2.8692 -2.6121 2.5761 29 1 3.6964 -3.7599 4.5855 30 1 3.9310 -2.5317 6.7040 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000191996682.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:42:38 Heat of formation + Delta-G solvation = -74.240084 kcal Electronic energy + Delta-G solvation = -17961.410373 eV Core-core repulsion = 14716.595810 eV Total energy + Delta-G solvation = -3244.814563 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 315.001 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -50.09205 -41.09530 -39.43345 -36.79219 -34.55646 -33.59319 -32.17207 -30.84466 -30.06783 -27.36471 -25.50331 -23.64850 -22.87071 -21.34995 -19.65964 -18.53426 -17.88797 -17.61834 -17.04419 -16.91883 -16.31676 -15.85715 -15.71432 -15.40717 -14.70614 -14.40256 -14.31490 -13.85477 -13.68939 -13.27321 -13.01912 -12.89845 -12.72760 -12.52269 -12.30040 -12.13707 -12.03541 -11.45465 -11.13350 -10.93851 -10.61245 -10.21747 -9.86040 -9.78789 -8.17923 -6.36363 -0.47310 -0.19588 0.34838 1.46687 1.47872 1.58366 1.73836 2.24426 2.48236 2.53239 2.92625 3.13084 3.52621 3.72555 3.83104 4.08151 4.32304 4.70676 4.71340 4.78834 4.88755 4.98442 5.05383 5.11242 5.38295 5.52433 5.56193 5.64663 5.85865 6.05861 6.69648 6.81779 7.27625 7.43070 8.88796 Molecular weight = 315.00amu Principal moments of inertia in cm(-1) A = 0.036756 B = 0.003286 C = 0.003103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.602757 B = 8519.612412 C = 9022.668773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.269 3.731 3 H -0.003 1.003 4 C -0.547 4.547 5 H 0.080 0.920 6 C 0.014 3.986 7 N -0.919 5.919 8 Si 0.976 3.024 9 H -0.269 1.269 10 H -0.289 1.289 11 H -0.261 1.261 12 N -0.690 5.690 13 C 0.536 3.464 14 O -0.590 6.590 15 C -0.181 4.181 16 C -0.038 4.038 17 C -0.109 4.109 18 C -0.028 4.028 19 C -0.152 4.152 20 Br -0.025 7.025 21 C 0.147 3.853 22 F -0.128 7.128 23 H 0.068 0.932 24 H 0.045 0.955 25 H 0.008 0.992 26 H 0.266 0.734 27 H 0.408 0.592 28 H 0.166 0.834 29 H 0.196 0.804 30 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.255 -12.191 20.088 24.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.166 3.834 3 H 0.015 0.985 4 C -0.585 4.585 5 H 0.098 0.902 6 C -0.187 4.187 7 N -0.557 5.557 8 Si 0.800 3.200 9 H -0.195 1.195 10 H -0.215 1.215 11 H -0.185 1.185 12 N -0.339 5.339 13 C 0.323 3.677 14 O -0.473 6.473 15 C -0.185 4.185 16 C -0.057 4.057 17 C -0.127 4.127 18 C -0.048 4.048 19 C -0.232 4.232 20 Br 0.061 6.939 21 C 0.125 3.875 22 F -0.107 7.107 23 H 0.087 0.913 24 H 0.064 0.936 25 H 0.027 0.973 26 H 0.075 0.925 27 H 0.245 0.755 28 H 0.184 0.816 29 H 0.213 0.787 30 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 7.015 -10.837 20.563 24.279 hybrid contribution -0.144 0.299 -1.354 1.394 sum 6.871 -10.538 19.209 22.962 Atomic orbital electron populations 1.21908 0.98123 0.99747 0.99516 1.18429 0.91271 0.92006 0.81661 0.98479 1.21521 1.32814 1.13739 0.90403 0.90238 1.25844 0.94802 0.95523 1.02482 1.70067 1.36970 1.23991 1.24692 0.85281 0.79098 0.77944 0.77630 1.19471 1.21532 1.18491 1.46127 1.64477 1.14250 1.09089 1.18605 0.78362 0.86429 0.84255 1.90776 1.52937 1.17787 1.85772 1.20148 1.09270 0.97132 0.91987 1.21804 0.92040 0.90128 1.01680 1.21714 0.98159 1.02831 0.89979 1.21739 0.92785 0.89371 1.00876 1.22070 1.11390 0.98130 0.91622 1.96747 1.96870 1.76523 1.23793 1.17807 0.97613 0.78540 0.93581 1.91567 1.89487 1.32916 1.96690 0.91302 0.93576 0.97312 0.92527 0.75529 0.81617 0.78735 0.79874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.88 9.26 71.98 0.67 -6.21 16 2 C 0.27 14.09 2.56 44.24 0.11 14.20 16 3 H 0.00 -0.17 7.58 -2.39 -0.02 -0.19 16 4 C -0.55 -28.38 8.73 25.60 0.22 -28.16 16 5 H 0.08 3.75 7.74 -2.91 -0.02 3.73 16 6 C 0.01 0.72 5.30 84.65 0.45 1.17 16 7 N -0.92 -52.68 11.32 21.45 0.24 -52.44 16 8 Si 0.98 41.07 29.54 68.60 2.03 43.09 16 9 H -0.27 -10.86 7.11 99.48 0.71 -10.16 16 10 H -0.29 -12.31 7.11 99.48 0.71 -11.60 16 11 H -0.26 -10.36 7.11 99.48 0.71 -9.66 16 12 N -0.69 -28.75 5.02 -449.13 -2.25 -31.00 16 13 C 0.54 23.04 7.73 86.74 0.67 23.71 16 14 O -0.59 -31.64 15.00 -3.95 -0.06 -31.70 16 15 C -0.18 -5.71 5.88 -20.05 -0.12 -5.83 16 16 C -0.04 -0.74 9.54 22.52 0.21 -0.53 16 17 C -0.11 -1.29 10.03 22.23 0.22 -1.07 16 18 C -0.03 -0.40 9.77 22.33 0.22 -0.18 16 19 C -0.15 -3.50 6.22 22.32 0.14 -3.36 16 20 Br -0.02 -0.53 33.28 -20.37 -0.68 -1.21 16 21 C 0.15 4.70 7.25 22.69 0.16 4.87 16 22 F -0.13 -5.08 15.01 44.97 0.68 -4.41 16 23 H 0.07 3.85 6.07 -2.39 -0.01 3.84 16 24 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 25 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 26 H 0.27 14.40 8.31 -92.70 -0.77 13.63 16 27 H 0.41 13.33 6.57 -92.71 -0.61 12.72 16 28 H 0.17 2.50 6.40 -2.91 -0.02 2.48 16 29 H 0.20 0.50 8.06 -2.91 -0.02 0.48 16 30 H 0.18 1.19 8.06 -2.91 -0.02 1.17 16 Total: -1.00 -73.60 287.83 3.50 -70.10 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: 0.58 Total: 8.94 kcal Atomic # 6 Polarization: -4.34 SS G_CDS: 2.96 Total: -1.38 kcal Atomic # 7 Polarization: -81.43 SS G_CDS: -2.01 Total: -83.44 kcal Atomic # 8 Polarization: -31.64 SS G_CDS: -0.06 Total: -31.70 kcal Atomic # 9 Polarization: -5.08 SS G_CDS: 0.68 Total: -4.41 kcal Atomic # 14 Polarization: 41.07 SS G_CDS: 2.03 Total: 43.09 kcal Atomic # 35 Polarization: -0.53 SS G_CDS: -0.68 Total: -1.21 kcal Total: -73.60 3.50 -70.10 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191996682.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.143 kcal (2) G-P(sol) polarization free energy of solvation -73.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds