Wall clock time and date at job start Tue Mar 31 2020 10:43:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46501 * 120.00035 * 2 1 4 4 C 1.50699 * 109.47252 * 270.00128 * 3 2 1 5 5 H 1.08004 * 119.99462 * 359.97438 * 4 3 2 6 6 C 1.37868 * 120.00252 * 180.02562 * 4 3 2 7 7 N 1.31516 * 120.00029 * 359.97438 * 6 4 3 8 8 Si 1.86804 * 120.00141 * 179.97438 * 6 4 3 9 9 H 1.48497 * 109.46961 * 59.99865 * 8 6 4 10 10 H 1.48498 * 109.46985 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.47241 * 299.99732 * 8 6 4 12 12 C 1.34778 * 120.00075 * 179.97438 * 2 1 3 13 13 O 1.21569 * 119.99786 * 175.58879 * 12 2 1 14 14 C 1.47689 * 119.99874 * 355.59639 * 12 2 1 15 15 C 1.39675 * 120.16613 * 47.97748 * 14 12 2 16 16 C 1.37852 * 119.89536 * 179.78604 * 15 14 12 17 17 C 1.38450 * 120.23280 * 0.49121 * 16 15 14 18 18 C 1.38280 * 120.32580 * 359.74315 * 17 16 15 19 19 Br 1.89100 * 119.95025 * 180.02562 * 18 17 16 20 20 C 1.38411 * 120.09898 * 0.02562 * 18 17 16 21 21 F 1.35097 * 120.11346 * 180.02562 * 20 18 17 22 22 H 1.08994 * 109.47001 * 94.79837 * 1 2 3 23 23 H 1.09004 * 109.47218 * 214.79437 * 1 2 3 24 24 H 1.08998 * 109.47314 * 334.79233 * 1 2 3 25 25 H 1.08998 * 109.46896 * 29.99538 * 3 2 1 26 26 H 1.08995 * 109.47146 * 149.99785 * 3 2 1 27 27 H 0.97003 * 119.99880 * 180.02562 * 7 6 4 28 28 H 1.07999 * 120.04622 * 0.02746 * 15 14 12 29 29 H 1.08002 * 119.88171 * 180.22966 * 16 15 14 30 30 H 1.07993 * 119.83571 * 179.75793 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7038 -1.4208 5 1 2.0980 1.0957 -2.2417 6 6 3.1268 2.8774 -1.6727 7 7 3.5542 3.6175 -0.6731 8 14 3.4388 3.4163 -3.4340 9 1 2.1415 3.5942 -4.1343 10 1 4.1812 4.7024 -3.4339 11 1 4.2412 2.3811 -4.1336 12 6 2.1389 -1.1672 0.0005 13 8 3.3519 -1.1687 -0.0805 14 6 1.4037 -2.4443 0.0993 15 6 0.2956 -2.6812 -0.7173 16 6 -0.3838 -3.8770 -0.6236 17 6 0.0221 -4.8401 0.2844 18 6 1.1148 -4.6135 1.1009 19 35 1.6605 -5.9366 2.3368 20 6 1.8099 -3.4196 1.0148 21 9 2.8779 -3.1981 1.8120 22 1 -0.3633 -0.0860 -1.0240 23 1 -0.3634 -0.8439 0.5864 24 1 -0.3634 0.9298 0.4377 25 1 1.6084 2.0284 0.5138 26 1 3.1498 1.1384 0.5138 27 1 4.0310 4.4435 -0.8504 28 1 -0.0259 -1.9303 -1.4238 29 1 -1.2384 -4.0615 -1.2578 30 1 -0.5173 -5.7731 0.3552 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000234294908.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:43:24 Heat of formation + Delta-G solvation = -64.336954 kcal Electronic energy + Delta-G solvation = -18172.177798 eV Core-core repulsion = 14927.792668 eV Total energy + Delta-G solvation = -3244.385131 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 315.001 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -50.18614 -41.23343 -39.40350 -36.75382 -34.84837 -33.61326 -32.09717 -30.53304 -29.58346 -27.60119 -25.83521 -24.05328 -23.51593 -20.77427 -18.77211 -18.71275 -18.18737 -17.84874 -17.32072 -16.85967 -16.43622 -16.07511 -15.72159 -15.26367 -14.61419 -14.44028 -14.25938 -13.87056 -13.79330 -13.54412 -13.22103 -13.20485 -12.84649 -12.57826 -12.40826 -12.21374 -11.98578 -11.75962 -11.45479 -10.91566 -10.65582 -10.10075 -9.85196 -9.54717 -8.24020 -6.39168 -0.36552 -0.20453 0.34350 1.37014 1.42027 1.49056 1.64172 2.11843 2.34277 2.43027 2.90085 3.06074 3.33894 3.75492 3.80561 4.06892 4.27931 4.34641 4.64349 4.71123 4.74768 4.85393 4.94666 5.02711 5.11835 5.15665 5.49475 5.55802 5.75818 6.01050 6.54512 6.68891 7.16175 7.33800 8.83577 Molecular weight = 315.00amu Principal moments of inertia in cm(-1) A = 0.032986 B = 0.003587 C = 0.003424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.629512 B = 7804.280448 C = 8176.686415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.596 5.596 3 C 0.259 3.741 4 C -0.544 4.544 5 H 0.057 0.943 6 C 0.007 3.993 7 N -0.930 5.930 8 Si 0.970 3.030 9 H -0.255 1.255 10 H -0.279 1.279 11 H -0.279 1.279 12 C 0.538 3.462 13 O -0.587 6.587 14 C -0.167 4.167 15 C -0.044 4.044 16 C -0.102 4.102 17 C -0.033 4.033 18 C -0.145 4.145 19 Br -0.024 7.024 20 C 0.137 3.863 21 F -0.137 7.137 22 H 0.077 0.923 23 H 0.089 0.911 24 H 0.076 0.924 25 H 0.032 0.968 26 H -0.007 1.007 27 H 0.268 0.732 28 H 0.162 0.838 29 H 0.197 0.803 30 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.210 -21.046 2.373 26.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.326 5.326 3 C 0.138 3.862 4 C -0.582 4.582 5 H 0.076 0.924 6 C -0.192 4.192 7 N -0.569 5.569 8 Si 0.794 3.206 9 H -0.180 1.180 10 H -0.204 1.204 11 H -0.205 1.205 12 C 0.326 3.674 13 O -0.468 6.468 14 C -0.172 4.172 15 C -0.063 4.063 16 C -0.120 4.120 17 C -0.052 4.052 18 C -0.225 4.225 19 Br 0.061 6.939 20 C 0.114 3.886 21 F -0.116 7.116 22 H 0.096 0.904 23 H 0.107 0.893 24 H 0.095 0.905 25 H 0.050 0.950 26 H 0.011 0.989 27 H 0.077 0.923 28 H 0.180 0.820 29 H 0.214 0.786 30 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -14.271 -21.317 2.895 25.815 hybrid contribution 1.171 1.201 -0.479 1.745 sum -13.100 -20.116 2.416 24.126 Atomic orbital electron populations 1.22176 0.77357 1.04029 1.03153 1.48090 1.08756 1.05826 1.69955 1.18880 0.91006 0.79719 0.96587 1.21636 1.37210 1.06633 0.92736 0.92438 1.25891 0.94728 0.96364 1.02188 1.70051 1.38771 1.14827 1.33254 0.85428 0.79016 0.77248 0.78890 1.17957 1.20419 1.20487 1.18650 0.86808 0.84669 0.77297 1.90762 1.16281 1.87821 1.51960 1.20008 1.00977 0.94174 1.02077 1.21822 0.89931 0.99281 0.95226 1.21705 1.01163 0.90731 0.98429 1.21713 0.91430 1.01279 0.90789 1.22025 1.02764 0.93528 1.04173 1.96749 1.91317 1.48962 1.56860 1.17699 0.85552 0.94034 0.91275 1.91535 1.53649 1.94911 1.71466 0.90424 0.89277 0.90474 0.94997 0.98851 0.92336 0.82013 0.78641 0.79798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.16 9.09 127.77 1.16 3.32 16 2 N -0.60 -26.09 2.86 -854.77 -2.44 -28.53 16 3 C 0.26 14.27 5.17 85.63 0.44 14.71 16 4 C -0.54 -31.47 9.39 25.60 0.24 -31.23 16 5 H 0.06 3.24 7.81 -2.91 -0.02 3.22 16 6 C 0.01 0.42 5.46 84.65 0.46 0.89 16 7 N -0.93 -56.71 13.29 21.44 0.28 -56.42 16 8 Si 0.97 44.80 29.54 68.60 2.03 46.82 16 9 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 10 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 11 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 12 C 0.54 24.43 7.02 86.74 0.61 25.04 16 13 O -0.59 -33.58 16.24 -3.93 -0.06 -33.64 16 14 C -0.17 -5.48 4.93 -20.05 -0.10 -5.58 16 15 C -0.04 -0.91 7.75 22.53 0.17 -0.74 16 16 C -0.10 -1.22 10.03 22.23 0.22 -1.00 16 17 C -0.03 -0.45 9.77 22.33 0.22 -0.24 16 18 C -0.14 -3.33 6.22 22.32 0.14 -3.19 16 19 Br -0.02 -0.52 33.28 -20.37 -0.68 -1.20 16 20 C 0.14 4.40 7.22 22.69 0.16 4.56 16 21 F -0.14 -5.41 15.95 44.97 0.72 -4.70 16 22 H 0.08 1.88 7.05 -2.39 -0.02 1.87 16 23 H 0.09 2.01 6.22 -2.38 -0.01 2.00 16 24 H 0.08 2.18 7.84 -2.39 -0.02 2.16 16 25 H 0.03 1.75 7.86 -2.39 -0.02 1.73 16 26 H -0.01 -0.43 7.49 -2.39 -0.02 -0.45 16 27 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 28 H 0.16 2.90 6.21 -2.91 -0.02 2.89 16 29 H 0.20 0.48 8.06 -2.91 -0.02 0.46 16 30 H 0.18 1.15 8.06 -2.91 -0.02 1.13 16 Total: -1.00 -80.51 289.41 4.75 -75.76 By element: Atomic # 1 Polarization: -5.81 SS G_CDS: 1.18 Total: -4.63 kcal Atomic # 6 Polarization: 2.81 SS G_CDS: 3.73 Total: 6.54 kcal Atomic # 7 Polarization: -82.80 SS G_CDS: -2.16 Total: -84.96 kcal Atomic # 8 Polarization: -33.58 SS G_CDS: -0.06 Total: -33.64 kcal Atomic # 9 Polarization: -5.41 SS G_CDS: 0.72 Total: -4.70 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.82 kcal Atomic # 35 Polarization: -0.52 SS G_CDS: -0.68 Total: -1.20 kcal Total: -80.51 4.75 -75.76 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234294908.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.418 kcal (2) G-P(sol) polarization free energy of solvation -80.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds