Wall clock time and date at job start Tue Mar 31 2020 10:55:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.40273 * 126.63730 * 2 1 4 4 C 1.35310 * 107.11986 * 180.02562 * 3 2 1 5 5 Br 1.89098 * 125.62931 * 180.02562 * 4 3 2 6 6 O 1.33948 * 108.74049 * 359.73933 * 4 3 2 7 7 C 1.34972 * 109.37044 * 0.43430 * 6 4 3 8 8 C 1.46552 * 125.97972 * 179.82829 * 7 6 4 9 9 O 1.21711 * 119.99661 * 185.75978 * 8 7 6 10 10 N 1.34776 * 120.00465 * 5.75834 * 8 7 6 11 11 C 1.46500 * 119.99447 * 356.16660 * 10 8 7 12 12 C 1.46497 * 120.00092 * 176.16836 * 10 8 7 13 13 H 1.08997 * 109.47151 * 359.97438 * 12 10 8 14 14 C 1.53002 * 109.46888 * 240.00021 * 12 10 8 15 15 C 1.50698 * 109.47076 * 119.99898 * 12 10 8 16 16 H 1.08007 * 120.00323 * 0.02562 * 15 12 10 17 17 C 1.37880 * 119.99880 * 179.97438 * 15 12 10 18 18 N 1.31505 * 120.00052 * 0.02562 * 17 15 12 19 19 Si 1.86806 * 119.99899 * 179.97438 * 17 15 12 20 20 H 1.48498 * 109.46887 * 60.00235 * 19 17 15 21 21 H 1.48502 * 109.47072 * 180.02562 * 19 17 15 22 22 H 1.48496 * 109.47062 * 300.00332 * 19 17 15 23 23 H 1.08997 * 109.46795 * 269.95554 * 1 2 3 24 24 H 1.09005 * 109.46728 * 29.95207 * 1 2 3 25 25 H 1.08991 * 109.47099 * 149.95378 * 1 2 3 26 26 H 1.08005 * 126.43929 * 0.04232 * 3 2 1 27 27 H 1.09000 * 109.47152 * 275.71295 * 11 10 8 28 28 H 1.08995 * 109.47589 * 35.71401 * 11 10 8 29 29 H 1.09004 * 109.47062 * 155.71915 * 11 10 8 30 30 H 1.09007 * 109.46940 * 299.99836 * 14 12 10 31 31 H 1.09000 * 109.47088 * 180.02562 * 14 12 10 32 32 H 1.08997 * 109.47391 * 59.99531 * 14 12 10 33 33 H 0.97007 * 120.00421 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3441 1.1256 0.0000 4 6 3.6195 0.6735 -0.0006 5 35 5.1712 1.7542 -0.0002 6 8 3.6013 -0.6658 0.0048 7 6 2.3220 -1.0962 -0.0007 8 6 1.8842 -2.4948 -0.0010 9 8 0.7020 -2.7623 -0.1120 10 7 2.7904 -3.4848 0.1217 11 6 4.2198 -3.1673 0.1708 12 6 2.3462 -4.8782 0.2059 13 1 1.2581 -4.9165 0.1533 14 6 2.8138 -5.4834 1.5310 15 6 2.9328 -5.6625 -0.9394 16 1 3.5730 -5.1722 -1.6579 17 6 2.6532 -7.0064 -1.0694 18 7 1.8742 -7.6036 -0.1943 19 14 3.3799 -7.9785 -2.4895 20 1 4.8622 -7.9257 -2.4182 21 1 2.9297 -9.3910 -2.4041 22 1 2.9250 -7.3913 -3.7753 23 1 -0.3633 -0.0008 1.0277 24 1 -0.3633 0.8905 -0.5131 25 1 -0.3633 -0.8895 -0.5145 26 1 2.0297 2.1589 0.0006 27 1 4.6048 -3.0672 -0.8440 28 1 4.3657 -2.2307 0.7088 29 1 4.7524 -3.9680 0.6842 30 1 3.9019 -5.4451 1.5840 31 1 2.4837 -6.5203 1.5935 32 1 2.3896 -4.9161 2.3594 33 1 1.6777 -8.5492 -0.2855 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264114325.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:55:28 Heat of formation + Delta-G solvation = -25.720272 kcal Electronic energy + Delta-G solvation = -18819.889118 eV Core-core repulsion = 15700.638838 eV Total energy + Delta-G solvation = -3119.250281 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 315.026 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.92953 -40.59178 -37.44037 -35.37653 -34.75873 -33.42293 -31.71516 -30.26887 -28.71171 -27.68748 -27.29414 -24.28336 -22.87184 -21.71349 -20.46642 -18.65902 -18.35657 -17.79340 -17.50056 -16.93459 -16.21623 -15.91148 -15.06908 -14.71626 -14.55745 -14.36337 -14.16690 -13.94821 -13.76406 -13.50019 -13.01860 -12.94185 -12.87024 -12.76033 -12.59240 -12.39725 -12.21703 -12.14431 -11.79012 -11.24706 -11.01487 -10.76201 -10.54234 -9.78200 -9.38712 -8.16808 -6.33472 -0.33894 -0.22143 1.06689 1.41667 1.43680 1.51235 1.77998 2.07802 2.31977 2.46925 3.11316 3.56884 3.61530 4.05494 4.22959 4.38302 4.48566 4.63747 4.68849 4.78161 4.84850 4.86957 4.96668 4.99386 5.06837 5.29474 5.38101 5.49380 5.59952 5.67042 5.96397 6.10505 6.59211 6.71128 7.07492 7.37967 8.87553 Molecular weight = 315.03amu Principal moments of inertia in cm(-1) A = 0.021235 B = 0.003971 C = 0.003587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.272666 B = 7050.266479 C = 7803.405043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.093 4.093 3 C -0.152 4.152 4 C -0.022 4.022 5 Br 0.083 6.917 6 O -0.147 6.147 7 C -0.074 4.074 8 C 0.577 3.423 9 O -0.563 6.563 10 N -0.587 5.587 11 C 0.086 3.914 12 C 0.262 3.738 13 H 0.020 0.980 14 C -0.134 4.134 15 C -0.543 4.543 16 H 0.057 0.943 17 C 0.020 3.980 18 N -0.914 5.914 19 Si 0.965 3.035 20 H -0.264 1.264 21 H -0.280 1.280 22 H -0.278 1.278 23 H 0.082 0.918 24 H 0.101 0.899 25 H 0.062 0.938 26 H 0.201 0.799 27 H 0.053 0.947 28 H 0.085 0.915 29 H 0.082 0.918 30 H 0.047 0.953 31 H 0.074 0.926 32 H 0.023 0.977 33 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.111 21.632 1.851 22.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.097 4.097 3 C -0.173 4.173 4 C -0.152 4.152 5 Br 0.166 6.834 6 O -0.045 6.045 7 C -0.127 4.127 8 C 0.365 3.635 9 O -0.445 6.445 10 N -0.316 5.316 11 C -0.056 4.056 12 C 0.161 3.839 13 H 0.038 0.962 14 C -0.192 4.192 15 C -0.581 4.581 16 H 0.075 0.925 17 C -0.180 4.180 18 N -0.552 5.552 19 Si 0.789 3.211 20 H -0.189 1.189 21 H -0.206 1.206 22 H -0.204 1.204 23 H 0.101 0.899 24 H 0.119 0.881 25 H 0.081 0.919 26 H 0.218 0.782 27 H 0.072 0.928 28 H 0.103 0.897 29 H 0.101 0.899 30 H 0.066 0.934 31 H 0.092 0.908 32 H 0.042 0.958 33 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 7.294 21.450 1.854 22.732 hybrid contribution -0.093 -1.091 -0.659 1.279 sum 7.201 20.358 1.194 21.627 Atomic orbital electron populations 1.20472 0.86846 1.04067 1.03573 1.20954 0.98700 0.90419 0.99581 1.21898 0.88786 1.01482 1.05158 1.24834 0.96510 0.83076 1.10769 1.96884 1.31290 1.57546 1.97655 1.84389 1.28136 1.20842 1.71100 1.22025 0.81667 0.94592 1.14429 1.17064 0.85657 0.82779 0.77993 1.90773 1.17421 1.82661 1.53675 1.48241 1.07519 1.07646 1.68207 1.21902 0.79934 1.01702 1.02092 1.18707 0.95018 0.75415 0.94751 0.96238 1.21912 0.99706 1.02356 0.95272 1.21476 1.31170 0.94616 1.10883 0.92517 1.25681 0.95182 0.98383 0.98766 1.69989 1.36896 1.11638 1.36692 0.85516 0.79139 0.77355 0.79049 1.18869 1.20552 1.20382 0.89940 0.88065 0.91915 0.78231 0.92794 0.89702 0.89897 0.93381 0.90775 0.95807 0.92424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.42 9.88 71.24 0.70 -1.72 16 2 C -0.09 -2.69 6.19 -19.75 -0.12 -2.81 16 3 C -0.15 -3.34 10.78 22.09 0.24 -3.10 16 4 C -0.02 -0.54 7.80 67.14 0.52 -0.02 16 5 Br 0.08 1.44 34.09 -20.37 -0.69 0.74 16 6 O -0.15 -4.52 7.25 -5.80 -0.04 -4.57 16 7 C -0.07 -2.61 6.78 24.06 0.16 -2.44 16 8 C 0.58 25.75 7.64 86.41 0.66 26.41 16 9 O -0.56 -28.51 14.05 -4.38 -0.06 -28.57 16 10 N -0.59 -26.62 2.75 -831.66 -2.29 -28.91 16 11 C 0.09 3.12 8.88 127.77 1.13 4.25 16 12 C 0.26 13.86 2.63 44.25 0.12 13.98 16 13 H 0.02 1.21 6.90 -2.39 -0.02 1.19 16 14 C -0.13 -6.49 8.96 71.98 0.64 -5.85 16 15 C -0.54 -29.97 8.37 25.60 0.21 -29.76 16 16 H 0.06 3.08 7.65 -2.91 -0.02 3.06 16 17 C 0.02 1.10 5.30 84.66 0.45 1.55 16 18 N -0.91 -52.25 11.32 21.45 0.24 -52.00 16 19 Si 0.96 43.21 29.54 68.60 2.03 45.23 16 20 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 21 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 22 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 23 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 24 H 0.10 1.87 8.14 -2.38 -0.02 1.85 16 25 H 0.06 2.06 6.34 -2.39 -0.02 2.05 16 26 H 0.20 2.75 8.06 -2.91 -0.02 2.73 16 27 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 28 H 0.08 2.71 5.31 -2.39 -0.01 2.70 16 29 H 0.08 2.93 6.44 -2.38 -0.02 2.92 16 30 H 0.05 2.12 6.67 -2.38 -0.02 2.10 16 31 H 0.07 3.94 6.07 -2.39 -0.01 3.93 16 32 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.27 14.43 8.31 -92.70 -0.77 13.66 16 Total: -1.00 -65.36 297.83 5.04 -60.32 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: 1.14 Total: 7.25 kcal Atomic # 6 Polarization: -4.23 SS G_CDS: 4.72 Total: 0.50 kcal Atomic # 7 Polarization: -78.86 SS G_CDS: -2.05 Total: -80.91 kcal Atomic # 8 Polarization: -33.03 SS G_CDS: -0.10 Total: -33.14 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.23 kcal Atomic # 35 Polarization: 1.44 SS G_CDS: -0.69 Total: 0.74 kcal Total: -65.36 5.04 -60.32 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264114325.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.600 kcal (2) G-P(sol) polarization free energy of solvation -65.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds