Wall clock time and date at job start Tue Mar 31 2020 10:59:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09001 * 109.47563 * 305.00337 * 3 2 1 5 5 C 1.50700 * 109.47798 * 185.00026 * 3 2 1 6 6 H 1.07998 * 120.00370 * 240.00769 * 5 3 2 7 7 C 1.37878 * 119.99824 * 59.99855 * 5 3 2 8 8 N 1.31523 * 120.00027 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99983 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47402 * 60.00067 * 9 7 5 11 11 H 1.48504 * 109.47024 * 180.02562 * 9 7 5 12 12 H 1.48495 * 109.46769 * 299.99484 * 9 7 5 13 13 N 1.46502 * 109.47005 * 64.99872 * 3 2 1 14 14 C 1.34776 * 120.00080 * 275.00208 * 13 3 2 15 15 O 1.21709 * 119.99932 * 359.97438 * 14 13 3 16 16 C 1.46560 * 119.99682 * 180.02562 * 14 13 3 17 17 O 1.34966 * 125.98407 * 359.68612 * 16 14 13 18 18 C 1.33946 * 109.36753 * 179.88878 * 17 16 14 19 19 Br 1.89106 * 125.62864 * 180.15322 * 18 17 16 20 20 C 1.35312 * 108.74490 * 0.38016 * 18 17 16 21 21 C 1.36598 * 125.97748 * 180.02562 * 16 14 13 22 22 C 1.50703 * 126.63479 * 359.93735 * 21 16 14 23 23 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 24 24 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 25 25 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 27 27 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 28 28 H 0.96993 * 119.99651 * 179.97438 * 8 7 5 29 29 H 0.97001 * 119.99703 * 95.00546 * 13 3 2 30 30 H 1.07998 * 126.44105 * 179.79852 * 20 18 17 31 31 H 1.09006 * 109.47092 * 90.00042 * 22 21 16 32 32 H 1.09000 * 109.47169 * 210.00176 * 22 21 16 33 33 H 1.09001 * 109.47193 * 330.00647 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1473 1.8887 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1734 9 14 6.0050 0.8801 -1.3812 10 1 6.5968 0.1453 -0.2344 11 1 6.3978 0.2168 -2.6505 12 1 6.5004 2.2800 -1.3810 13 7 1.6525 2.0974 1.2518 14 6 0.4352 2.6643 1.3670 15 8 -0.3419 2.6326 0.4308 16 6 0.0478 3.3201 2.6191 17 8 0.8082 3.4213 3.7296 18 6 0.1296 4.0866 4.6735 19 35 0.7648 4.4912 6.4082 20 6 -1.0873 4.4171 4.1828 21 6 -1.1487 3.9301 2.8688 22 6 -2.3098 4.0562 1.9163 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8933 -0.5139 0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 3.8292 -0.0604 -2.9503 29 1 2.2720 2.1231 1.9978 30 1 -1.8650 4.9548 4.7047 31 1 -2.9707 3.1974 2.0334 32 1 -2.8607 4.9712 2.1343 33 1 -1.9376 4.0913 0.8924 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273822350.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:06 Heat of formation + Delta-G solvation = -26.180380 kcal Electronic energy + Delta-G solvation = -18633.032429 eV Core-core repulsion = 15513.762197 eV Total energy + Delta-G solvation = -3119.270233 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 315.026 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.73995 -38.95572 -35.35607 -34.11269 -32.55667 -32.31577 -31.05543 -29.39290 -27.81353 -26.64167 -23.33261 -22.28657 -21.43078 -19.84590 -19.46097 -18.13870 -16.56685 -16.36996 -15.56309 -15.36782 -14.45247 -14.43001 -13.83667 -13.40753 -13.14527 -12.99266 -12.72404 -12.55846 -12.14629 -11.83017 -11.61152 -11.45353 -11.28727 -11.03416 -10.89122 -10.85035 -10.37782 -10.24560 -9.73175 -9.69765 -9.38718 -9.11828 -8.55909 -8.53128 -7.93938 -6.16065 -4.25735 0.65857 1.01243 2.15951 3.08987 3.24820 3.29971 3.31668 3.65291 3.98038 4.34408 4.66377 5.09980 5.15344 5.18619 5.42580 5.69720 5.80749 5.85621 6.11545 6.34426 6.38780 6.41473 6.59219 6.70583 6.99104 7.13145 7.23475 7.31933 7.55905 7.66632 7.82839 8.10970 8.50116 8.66751 8.91308 9.41046 10.89308 Molecular weight = 315.03amu Principal moments of inertia in cm(-1) A = 0.017686 B = 0.003983 C = 0.003403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.782663 B = 7028.681157 C = 8226.141465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.128 4.128 3 C 0.269 3.731 4 H 0.054 0.946 5 C -0.537 4.537 6 H 0.062 0.938 7 C 0.069 3.931 8 N -0.882 5.882 9 Si 0.902 3.098 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.276 1.276 13 N -0.690 5.690 14 C 0.584 3.416 15 O -0.519 6.519 16 C -0.036 4.036 17 O -0.145 6.145 18 C -0.017 4.017 19 Br 0.050 6.950 20 C -0.162 4.162 21 C -0.106 4.106 22 C -0.090 4.090 23 H 0.051 0.949 24 H 0.037 0.963 25 H 0.025 0.975 26 H 0.033 0.967 27 H 0.102 0.898 28 H 0.266 0.734 29 H 0.394 0.606 30 H 0.163 0.837 31 H 0.073 0.927 32 H 0.064 0.936 33 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.943 7.906 16.120 19.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.167 4.167 3 C 0.168 3.832 4 H 0.072 0.928 5 C -0.575 4.575 6 H 0.080 0.920 7 C -0.135 4.135 8 N -0.519 5.519 9 Si 0.730 3.270 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.201 1.201 13 N -0.336 5.336 14 C 0.367 3.633 15 O -0.398 6.398 16 C -0.091 4.091 17 O -0.041 6.041 18 C -0.147 4.147 19 Br 0.133 6.867 20 C -0.184 4.184 21 C -0.110 4.110 22 C -0.147 4.147 23 H 0.070 0.930 24 H 0.056 0.944 25 H 0.044 0.956 26 H 0.051 0.949 27 H 0.120 0.880 28 H 0.076 0.924 29 H 0.227 0.773 30 H 0.180 0.820 31 H 0.092 0.908 32 H 0.083 0.917 33 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -7.893 7.775 15.883 19.365 hybrid contribution 1.151 -0.042 0.164 1.163 sum -6.742 7.733 16.047 19.046 Atomic orbital electron populations 1.21857 0.98280 0.98325 1.01173 1.21952 0.92677 0.99525 1.02573 1.18928 0.94590 0.89334 0.80338 0.92833 1.21167 0.90457 1.39406 1.06488 0.92021 1.24866 0.98713 0.94643 0.95273 1.69877 1.35302 1.37407 1.09303 0.86491 0.84678 0.78375 0.77484 1.20113 1.21072 1.20146 1.46554 1.13805 1.54197 1.19092 1.16524 0.83712 0.79427 0.83615 1.90837 1.51762 1.60237 1.36972 1.22876 0.91926 1.06733 0.87579 1.84150 1.41502 1.58582 1.19894 1.24051 0.94232 1.05387 0.91002 1.96840 1.89817 1.92104 1.07899 1.21541 0.96533 1.05056 0.95221 1.20580 0.96061 0.99297 0.95066 1.20401 0.93777 1.01637 0.98872 0.92968 0.94416 0.95604 0.94854 0.87986 0.92417 0.77294 0.81967 0.90841 0.91692 0.88948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.02 8.51 37.16 0.32 -2.71 16 2 C -0.13 -3.07 5.45 -26.74 -0.15 -3.22 16 3 C 0.27 6.66 2.24 -69.08 -0.15 6.51 16 4 H 0.05 1.51 7.58 -51.93 -0.39 1.11 16 5 C -0.54 -14.04 8.73 -34.44 -0.30 -14.34 16 6 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 7 C 0.07 1.81 5.29 -17.82 -0.09 1.72 16 8 N -0.88 -24.23 11.30 55.43 0.63 -23.60 16 9 Si 0.90 20.45 29.54 -169.99 -5.02 15.43 16 10 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 11 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 12 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 13 N -0.69 -14.61 5.02 -56.28 -0.28 -14.90 16 14 C 0.58 11.80 6.35 -12.91 -0.08 11.72 16 15 O -0.52 -11.43 11.87 5.18 0.06 -11.36 16 16 C -0.04 -0.63 7.13 -36.82 -0.26 -0.89 16 17 O -0.15 -2.33 10.40 4.80 0.05 -2.28 16 18 C -0.02 -0.22 7.80 29.69 0.23 0.01 16 19 Br 0.05 0.52 34.09 -68.01 -2.32 -1.80 16 20 C -0.16 -2.02 10.78 -39.86 -0.43 -2.45 16 21 C -0.11 -1.58 6.20 -104.45 -0.65 -2.22 16 22 C -0.09 -1.18 9.81 36.01 0.35 -0.83 16 23 H 0.05 1.19 7.84 -51.93 -0.41 0.78 16 24 H 0.04 0.80 5.64 -51.93 -0.29 0.51 16 25 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.10 2.68 5.95 -51.93 -0.31 2.37 16 28 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 29 H 0.39 7.66 8.29 -40.82 -0.34 7.32 16 30 H 0.16 1.50 8.06 -52.49 -0.42 1.08 16 31 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.09 1.41 6.44 -51.93 -0.33 1.07 16 LS Contribution 300.23 15.07 4.52 4.52 Total: -1.00 -27.84 300.23 -7.31 -35.15 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: -3.73 Total: 5.55 kcal Atomic # 6 Polarization: -5.48 SS G_CDS: -1.22 Total: -6.70 kcal Atomic # 7 Polarization: -38.84 SS G_CDS: 0.34 Total: -38.50 kcal Atomic # 8 Polarization: -13.76 SS G_CDS: 0.11 Total: -13.65 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Atomic # 35 Polarization: 0.52 SS G_CDS: -2.32 Total: -1.80 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -27.84 -7.31 -35.15 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273822350.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.967 kcal (2) G-P(sol) polarization free energy of solvation -27.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds