Wall clock time and date at job start Tue Mar 31 2020 10:59:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09001 * 109.47563 * 305.00337 * 3 2 1 5 5 C 1.50700 * 109.47798 * 185.00026 * 3 2 1 6 6 H 1.07998 * 120.00370 * 240.00769 * 5 3 2 7 7 C 1.37878 * 119.99824 * 59.99855 * 5 3 2 8 8 N 1.31523 * 120.00027 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99983 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47402 * 60.00067 * 9 7 5 11 11 H 1.48504 * 109.47024 * 180.02562 * 9 7 5 12 12 H 1.48495 * 109.46769 * 299.99484 * 9 7 5 13 13 N 1.46502 * 109.47005 * 64.99872 * 3 2 1 14 14 C 1.34776 * 120.00080 * 275.00208 * 13 3 2 15 15 O 1.21709 * 119.99932 * 359.97438 * 14 13 3 16 16 C 1.46560 * 119.99682 * 180.02562 * 14 13 3 17 17 O 1.34966 * 125.98407 * 359.68612 * 16 14 13 18 18 C 1.33946 * 109.36753 * 179.88878 * 17 16 14 19 19 Br 1.89106 * 125.62864 * 180.15322 * 18 17 16 20 20 C 1.35312 * 108.74490 * 0.38016 * 18 17 16 21 21 C 1.36598 * 125.97748 * 180.02562 * 16 14 13 22 22 C 1.50703 * 126.63479 * 359.93735 * 21 16 14 23 23 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 24 24 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 25 25 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 27 27 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 28 28 H 0.96993 * 119.99651 * 179.97438 * 8 7 5 29 29 H 0.97001 * 119.99703 * 95.00546 * 13 3 2 30 30 H 1.07998 * 126.44105 * 179.79852 * 20 18 17 31 31 H 1.09006 * 109.47092 * 90.00042 * 22 21 16 32 32 H 1.09000 * 109.47169 * 210.00176 * 22 21 16 33 33 H 1.09001 * 109.47193 * 330.00647 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1473 1.8887 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1734 9 14 6.0050 0.8801 -1.3812 10 1 6.5968 0.1453 -0.2344 11 1 6.3978 0.2168 -2.6505 12 1 6.5004 2.2800 -1.3810 13 7 1.6525 2.0974 1.2518 14 6 0.4352 2.6643 1.3670 15 8 -0.3419 2.6326 0.4308 16 6 0.0478 3.3201 2.6191 17 8 0.8082 3.4213 3.7296 18 6 0.1296 4.0866 4.6735 19 35 0.7648 4.4912 6.4082 20 6 -1.0873 4.4171 4.1828 21 6 -1.1487 3.9301 2.8688 22 6 -2.3098 4.0562 1.9163 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8933 -0.5139 0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 3.8292 -0.0604 -2.9503 29 1 2.2720 2.1231 1.9978 30 1 -1.8650 4.9548 4.7047 31 1 -2.9707 3.1974 2.0334 32 1 -2.8607 4.9712 2.1343 33 1 -1.9376 4.0913 0.8924 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273822350.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:06 Heat of formation + Delta-G solvation = -42.965598 kcal Electronic energy + Delta-G solvation = -18633.760291 eV Core-core repulsion = 15513.762197 eV Total energy + Delta-G solvation = -3119.998094 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 315.026 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.89559 -40.60058 -37.12945 -35.33588 -34.32312 -33.49276 -32.82404 -30.52434 -29.33423 -28.23089 -25.17612 -23.71806 -22.65923 -21.47224 -21.06158 -19.60925 -18.12100 -17.77265 -17.27181 -16.84096 -16.21476 -16.08798 -15.23133 -14.78768 -14.52695 -14.25588 -14.07776 -13.87424 -13.67288 -13.50374 -13.18432 -12.98215 -12.86059 -12.67319 -12.43074 -12.20510 -12.09771 -11.81389 -11.60557 -11.11404 -10.99680 -10.77296 -10.55129 -9.89484 -9.54672 -8.18002 -6.35315 -0.35375 -0.21860 1.06865 1.44701 1.46056 1.53914 1.84173 2.14097 2.35856 2.59355 3.11541 3.60252 3.82641 4.08578 4.32131 4.48081 4.53140 4.55839 4.73116 4.80521 4.87724 5.03585 5.06367 5.21036 5.30837 5.40695 5.46771 5.55995 5.58023 5.76491 5.87305 6.12580 6.68422 6.79155 7.20238 7.38643 8.87170 Molecular weight = 315.03amu Principal moments of inertia in cm(-1) A = 0.017686 B = 0.003983 C = 0.003403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.782663 B = 7028.681157 C = 8226.141465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.122 4.122 3 C 0.278 3.722 4 H 0.010 0.990 5 C -0.554 4.554 6 H 0.067 0.933 7 C 0.021 3.979 8 N -0.911 5.911 9 Si 0.969 3.031 10 H -0.267 1.267 11 H -0.283 1.283 12 H -0.273 1.273 13 N -0.694 5.694 14 C 0.585 3.415 15 O -0.545 6.545 16 C -0.077 4.077 17 O -0.160 6.160 18 C -0.018 4.018 19 Br 0.082 6.918 20 C -0.153 4.153 21 C -0.092 4.092 22 C -0.091 4.091 23 H 0.033 0.967 24 H 0.040 0.960 25 H 0.048 0.952 26 H 0.038 0.962 27 H 0.077 0.923 28 H 0.267 0.733 29 H 0.402 0.598 30 H 0.202 0.798 31 H 0.082 0.918 32 H 0.099 0.901 33 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.232 8.773 18.382 21.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.161 4.161 3 C 0.176 3.824 4 H 0.028 0.972 5 C -0.592 4.592 6 H 0.085 0.915 7 C -0.180 4.180 8 N -0.549 5.549 9 Si 0.793 3.207 10 H -0.191 1.191 11 H -0.208 1.208 12 H -0.198 1.198 13 N -0.341 5.341 14 C 0.371 3.629 15 O -0.426 6.426 16 C -0.131 4.131 17 O -0.057 6.057 18 C -0.148 4.148 19 Br 0.165 6.835 20 C -0.174 4.174 21 C -0.096 4.096 22 C -0.147 4.147 23 H 0.052 0.948 24 H 0.059 0.941 25 H 0.067 0.933 26 H 0.056 0.944 27 H 0.095 0.905 28 H 0.076 0.924 29 H 0.236 0.764 30 H 0.219 0.781 31 H 0.101 0.899 32 H 0.118 0.882 33 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -8.190 8.652 18.173 21.730 hybrid contribution 1.175 -0.222 -0.407 1.263 sum -7.015 8.430 17.766 20.879 Atomic orbital electron populations 1.21693 0.96668 0.99482 1.00384 1.21800 0.94050 0.98764 1.01456 1.18524 0.93927 0.89422 0.80575 0.97214 1.21491 0.91299 1.39502 1.06879 0.91519 1.25698 1.03210 0.94173 0.94871 1.70017 1.37095 1.37997 1.09743 0.85452 0.79172 0.78421 0.77628 1.19147 1.20823 1.19797 1.46319 1.14758 1.54878 1.18177 1.16796 0.82800 0.78710 0.84606 1.90813 1.52268 1.61106 1.38459 1.22238 0.93501 1.09851 0.87475 1.84108 1.41986 1.59503 1.20067 1.24726 0.94588 1.03873 0.91613 1.96885 1.89693 1.91711 1.05171 1.21933 0.96999 1.04439 0.94011 1.20968 0.95229 0.97178 0.96207 1.20460 0.93511 1.03769 0.96965 0.94768 0.94115 0.93337 0.94352 0.90453 0.92402 0.76390 0.78139 0.89944 0.88236 0.91621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.54 8.51 71.98 0.61 -4.93 16 2 C -0.12 -5.99 5.45 30.59 0.17 -5.82 16 3 C 0.28 14.32 2.24 44.24 0.10 14.42 16 4 H 0.01 0.60 7.58 -2.39 -0.02 0.58 16 5 C -0.55 -29.57 8.73 25.60 0.22 -29.34 16 6 H 0.07 3.40 7.74 -2.91 -0.02 3.38 16 7 C 0.02 1.14 5.29 84.65 0.45 1.59 16 8 N -0.91 -51.38 11.30 21.45 0.24 -51.13 16 9 Si 0.97 42.10 29.54 68.60 2.03 44.13 16 10 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 11 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 12 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 13 N -0.69 -30.33 5.02 -450.19 -2.26 -32.58 16 14 C 0.58 24.30 6.35 86.41 0.55 24.84 16 15 O -0.55 -24.98 11.87 -4.38 -0.05 -25.03 16 16 C -0.08 -2.62 7.13 24.06 0.17 -2.45 16 17 O -0.16 -4.98 10.40 -5.72 -0.06 -5.04 16 18 C -0.02 -0.45 7.80 67.14 0.52 0.07 16 19 Br 0.08 1.48 34.09 -20.37 -0.69 0.78 16 20 C -0.15 -3.31 10.78 22.09 0.24 -3.07 16 21 C -0.09 -2.57 6.20 -19.75 -0.12 -2.69 16 22 C -0.09 -2.21 9.81 71.24 0.70 -1.51 16 23 H 0.03 1.60 7.84 -2.39 -0.02 1.58 16 24 H 0.04 1.75 5.64 -2.39 -0.01 1.74 16 25 H 0.05 1.88 8.14 -2.38 -0.02 1.86 16 26 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 27 H 0.08 4.21 5.95 -2.39 -0.01 4.20 16 28 H 0.27 14.27 8.31 -92.71 -0.77 13.50 16 29 H 0.40 16.00 8.29 -92.71 -0.77 15.23 16 30 H 0.20 2.70 8.06 -2.91 -0.02 2.68 16 31 H 0.08 1.88 8.14 -2.38 -0.02 1.86 16 32 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.06 2.00 6.44 -2.39 -0.02 1.98 16 Total: -1.00 -61.65 300.23 3.19 -58.46 By element: Atomic # 1 Polarization: 18.94 SS G_CDS: 0.38 Total: 19.32 kcal Atomic # 6 Polarization: -12.50 SS G_CDS: 3.61 Total: -8.89 kcal Atomic # 7 Polarization: -81.70 SS G_CDS: -2.02 Total: -83.72 kcal Atomic # 8 Polarization: -29.96 SS G_CDS: -0.11 Total: -30.07 kcal Atomic # 14 Polarization: 42.10 SS G_CDS: 2.03 Total: 44.13 kcal Atomic # 35 Polarization: 1.48 SS G_CDS: -0.69 Total: 0.78 kcal Total: -61.65 3.19 -58.46 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273822350.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.491 kcal (2) G-P(sol) polarization free energy of solvation -61.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds