Wall clock time and date at job start Tue Mar 31 2020 10:48:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.31902 * 119.60849 * 2 1 4 4 C 1.31946 * 121.70799 * 179.97438 * 3 2 1 5 5 Cl 1.73598 * 119.63954 * 179.72795 * 4 3 2 6 6 C 1.38395 * 120.72916 * 0.02562 * 4 3 2 7 7 C 1.38565 * 119.15016 * 0.02562 * 6 4 3 8 8 C 1.38142 * 119.60585 * 180.02562 * 2 1 3 9 9 S 1.76205 * 120.40792 * 0.02562 * 8 2 1 10 10 O 1.42092 * 106.40425 * 177.02547 * 9 8 2 11 11 O 1.42102 * 106.39939 * 309.95139 * 9 8 2 12 12 N 1.65603 * 107.21311 * 63.48595 * 9 8 2 13 13 C 1.36940 * 120.00186 * 261.57444 * 12 9 8 14 14 H 1.08000 * 119.99495 * 8.17447 * 13 12 9 15 15 C 1.38811 * 119.99934 * 188.17952 * 13 12 9 16 16 N 1.31616 * 120.00140 * 18.39679 * 15 13 12 17 17 Si 1.86796 * 119.99730 * 198.39758 * 15 13 12 18 18 H 1.48498 * 109.47108 * 90.00125 * 17 15 13 19 19 H 1.48503 * 109.47264 * 209.99860 * 17 15 13 20 20 H 1.48499 * 109.47376 * 329.99602 * 17 15 13 21 21 C 1.46504 * 119.99833 * 81.57517 * 12 9 8 22 22 C 1.47197 * 109.47026 * 93.01521 * 21 12 9 23 23 N 6.54878 * 83.73923 * 207.14859 * 2 1 3 24 24 H 1.08995 * 109.47609 * 97.01662 * 1 2 3 25 25 H 1.09001 * 109.47110 * 217.01749 * 1 2 3 26 26 H 1.09000 * 109.47143 * 337.01115 * 1 2 3 27 27 H 1.08005 * 120.43006 * 179.97438 * 6 4 3 28 28 H 1.08000 * 120.78397 * 180.02562 * 7 6 4 29 29 H 0.96996 * 120.00281 * 180.02562 * 16 15 13 30 30 H 1.09000 * 109.47178 * 213.01378 * 21 12 9 31 31 H 1.08996 * 109.47332 * 333.01609 * 21 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1587 1.1468 0.0000 4 6 3.4773 1.1951 0.0005 5 17 4.2800 2.7344 -0.0067 6 6 4.2276 0.0322 0.0005 7 6 3.5766 -1.1910 -0.0005 8 6 2.1895 -1.2011 -0.0005 9 16 1.3088 -2.7273 -0.0019 10 8 2.2873 -3.7551 -0.0729 11 8 0.3497 -2.6380 1.0428 12 7 0.4528 -2.7978 -1.4178 13 6 -0.8736 -2.4580 -1.4336 14 1 -1.3292 -2.0195 -0.5580 15 6 -1.6327 -2.6772 -2.5750 16 7 -1.2098 -3.5179 -3.4951 17 14 -3.2543 -1.7790 -2.8049 18 1 -3.0135 -0.4959 -3.5125 19 1 -4.1772 -2.6212 -3.6075 20 1 -3.8615 -1.5060 -1.4775 21 6 1.1147 -3.2239 -2.6534 22 6 0.9333 -4.6736 -2.8324 23 7 0.7929 -5.7925 -2.9704 24 1 -0.3634 -0.1255 -1.0199 25 1 -0.3633 -0.8205 0.6187 26 1 -0.3633 0.9460 0.4014 27 1 5.3067 0.0774 0.0005 28 1 4.1360 -2.1149 -0.0001 29 1 -1.7399 -3.6708 -4.2929 30 1 0.6772 -2.6957 -3.5006 31 1 2.1787 -2.9956 -2.5930 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000287031773.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:48:24 Heat of formation + Delta-G solvation = -10.756263 kcal Electronic energy + Delta-G solvation = -22267.864187 eV Core-core repulsion = 18702.903008 eV Total energy + Delta-G solvation = -3564.961179 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 315.023 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.44638 -38.37773 -38.34036 -37.86249 -36.83337 -36.18865 -34.17856 -33.57693 -33.16804 -29.40240 -28.53466 -25.82919 -25.12043 -23.58230 -20.60222 -19.76368 -19.36358 -18.45004 -18.15682 -17.81094 -17.41420 -16.37011 -16.22932 -15.92080 -15.33388 -15.22367 -14.73753 -14.47353 -14.18830 -14.10956 -13.82434 -13.55967 -13.48126 -13.20396 -13.06650 -12.94931 -12.78551 -12.70105 -12.50486 -12.48761 -12.15727 -12.10320 -11.84326 -11.75332 -11.38172 -11.21009 -10.81144 -10.20330 -10.07525 -8.13014 -5.80229 -0.74863 -0.47115 -0.01891 0.55783 1.56307 1.61302 1.67574 1.89857 2.24954 2.40674 2.52179 2.69407 2.84453 3.13431 3.16710 3.37465 3.64659 3.74575 3.78980 3.99387 4.33190 4.38230 4.48582 4.61411 4.84188 4.89240 4.95506 5.14742 5.37227 5.44009 5.71026 6.43634 6.47503 7.01211 7.21595 7.38986 8.88924 Molecular weight = 315.02amu Principal moments of inertia in cm(-1) A = 0.016010 B = 0.005643 C = 0.004827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1748.481546 B = 4961.007391 C = 5798.844673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.256 3.744 3 N -0.515 5.515 4 C 0.213 3.787 5 Cl -0.011 7.011 6 C -0.176 4.176 7 C 0.036 3.964 8 C -0.738 4.738 9 S 2.695 3.305 10 O -0.986 6.986 11 O -0.978 6.978 12 N -0.858 5.858 13 C -0.333 4.333 14 H 0.126 0.874 15 C 0.008 3.992 16 N -0.911 5.911 17 Si 0.966 3.034 18 H -0.265 1.265 19 H -0.302 1.302 20 H -0.264 1.264 21 C 0.240 3.760 22 C 0.270 3.730 23 N -0.529 5.529 24 H 0.120 0.880 25 H 0.104 0.896 26 H 0.099 0.901 27 H 0.192 0.808 28 H 0.185 0.815 29 H 0.266 0.734 30 H 0.139 0.861 31 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.464 12.281 3.752 16.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.118 3.882 3 N -0.228 5.228 4 C 0.048 3.952 5 Cl 0.018 6.982 6 C -0.197 4.197 7 C 0.009 3.991 8 C -0.826 4.826 9 S 2.786 3.214 10 O -0.976 6.976 11 O -0.968 6.968 12 N -0.691 5.691 13 C -0.461 4.461 14 H 0.143 0.857 15 C -0.194 4.194 16 N -0.552 5.552 17 Si 0.791 3.209 18 H -0.190 1.190 19 H -0.229 1.229 20 H -0.188 1.188 21 C 0.111 3.889 22 C -0.048 4.048 23 N -0.210 5.210 24 H 0.138 0.862 25 H 0.122 0.878 26 H 0.118 0.882 27 H 0.209 0.791 28 H 0.202 0.798 29 H 0.076 0.924 30 H 0.156 0.844 31 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 9.822 10.908 4.079 15.235 hybrid contribution -0.368 0.594 -0.559 0.895 sum 9.454 11.502 3.520 15.299 Atomic orbital electron populations 1.21930 0.86801 1.06562 1.06958 1.20956 0.97286 0.85469 0.84535 1.67006 1.09161 1.30085 1.16567 1.22339 0.90071 0.89036 0.93708 1.98422 1.75986 1.27931 1.95844 1.22240 1.03624 0.89780 1.04071 1.21788 0.91161 1.00606 0.85529 1.31971 1.08104 1.21626 1.20934 1.01549 0.72494 0.74253 0.73074 1.93507 1.62551 1.54559 1.86948 1.93449 1.60944 1.87163 1.55244 1.52931 1.17812 1.77341 1.21018 1.19730 0.83623 1.40867 1.01924 0.85703 1.25583 1.01318 0.96374 0.96094 1.69910 1.40771 1.32948 1.11588 0.85327 0.78509 0.78451 0.78565 1.19005 1.22920 1.18799 1.18777 0.97072 0.81674 0.91410 1.29863 0.88650 0.95472 0.90808 1.80831 1.13716 1.15742 1.10753 0.86213 0.87790 0.88188 0.79087 0.79754 0.92381 0.84372 0.86516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 37. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.03 8.14 71.24 0.58 -4.45 16 2 C 0.26 7.86 6.78 42.53 0.29 8.14 16 3 N -0.51 -15.05 10.25 -174.85 -1.79 -16.85 16 4 C 0.21 5.14 7.27 84.71 0.62 5.76 16 5 Cl -0.01 -0.21 29.11 -2.72 -0.08 -0.29 16 6 C -0.18 -3.47 9.88 22.39 0.22 -3.25 16 7 C 0.04 0.83 9.66 22.46 0.22 1.05 16 8 C -0.74 -22.15 5.92 22.36 0.13 -22.01 16 9 S 2.70 100.04 4.98 -56.49 -0.28 99.76 16 10 O -0.99 -38.63 16.35 -128.00 -2.09 -40.73 16 11 O -0.98 -40.96 14.36 -128.00 -1.84 -42.80 16 12 N -0.86 -34.31 2.83 -352.51 -1.00 -35.30 16 13 C -0.33 -14.34 7.15 84.03 0.60 -13.74 16 14 H 0.13 5.22 5.44 -2.91 -0.02 5.20 16 15 C 0.01 0.34 5.08 84.86 0.43 0.77 16 16 N -0.91 -43.40 8.64 21.65 0.19 -43.22 16 17 Si 0.97 36.89 29.59 68.60 2.03 38.92 16 18 H -0.26 -9.58 7.11 99.48 0.71 -8.87 16 19 H -0.30 -12.33 7.11 99.48 0.71 -11.62 16 20 H -0.26 -9.80 7.11 99.48 0.71 -9.10 16 21 C 0.24 9.06 5.10 84.57 0.43 9.49 16 22 C 0.27 12.34 13.35 89.44 1.19 13.54 16 23 N -0.53 -26.62 18.54 20.01 0.37 -26.25 16 24 H 0.12 3.64 6.60 -2.39 -0.02 3.63 16 25 H 0.10 3.48 4.16 -2.39 -0.01 3.47 16 26 H 0.10 2.63 8.14 -2.39 -0.02 2.61 16 27 H 0.19 2.16 8.06 -2.91 -0.02 2.14 16 28 H 0.19 3.45 7.44 -2.91 -0.02 3.42 16 29 H 0.27 12.61 8.31 -92.71 -0.77 11.84 16 30 H 0.14 5.25 6.27 -2.39 -0.01 5.23 16 31 H 0.12 3.30 7.90 -2.39 -0.02 3.28 16 Total: -1.00 -61.65 296.63 1.43 -60.22 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: 1.21 Total: 11.24 kcal Atomic # 6 Polarization: -9.41 SS G_CDS: 4.71 Total: -4.70 kcal Atomic # 7 Polarization: -119.39 SS G_CDS: -2.23 Total: -121.62 kcal Atomic # 8 Polarization: -79.60 SS G_CDS: -3.93 Total: -83.53 kcal Atomic # 14 Polarization: 36.89 SS G_CDS: 2.03 Total: 38.92 kcal Atomic # 16 Polarization: 100.04 SS G_CDS: -0.28 Total: 99.76 kcal Atomic # 17 Polarization: -0.21 SS G_CDS: -0.08 Total: -0.29 kcal Total: -61.65 1.43 -60.22 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000287031773.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.459 kcal (2) G-P(sol) polarization free energy of solvation -61.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds