Wall clock time and date at job start Tue Mar 31 2020 10:47:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31564 * 1 3 3 Si 1.86800 * 119.99980 * 2 1 4 4 H 1.48506 * 109.47282 * 269.99857 * 3 2 1 5 5 H 1.48493 * 109.47332 * 29.99834 * 3 2 1 6 6 H 1.48506 * 109.46923 * 150.00274 * 3 2 1 7 7 C 1.38645 * 119.99859 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00046 * 179.97438 * 7 2 1 9 9 O 1.34836 * 120.00291 * 0.02562 * 7 2 1 10 10 C 1.35748 * 117.00522 * 185.41265 * 9 7 2 11 11 C 1.38950 * 120.02962 * 5.91201 * 10 9 7 12 12 C 1.38130 * 120.07182 * 179.97438 * 11 10 9 13 13 C 1.38200 * 120.13969 * 359.97438 * 12 11 10 14 14 C 1.38928 * 120.06023 * 0.02562 * 13 12 11 15 15 N 1.39924 * 120.03161 * 179.97438 * 14 13 12 16 16 C 1.34783 * 119.99823 * 146.40910 * 15 14 13 17 17 O 1.21286 * 119.99848 * 354.79692 * 16 15 14 18 18 C 1.50696 * 119.99992 * 174.80297 * 16 15 14 19 19 H 1.09001 * 115.55202 * 325.58176 * 18 16 15 20 20 C 1.52996 * 117.50095 * 179.91080 * 18 16 15 21 21 C 1.52997 * 60.00128 * 252.48534 * 20 18 16 22 22 Cl 1.80297 * 117.49605 * 252.50976 * 21 20 18 23 23 Cl 1.80302 * 117.49966 * 107.48836 * 21 20 18 24 24 C 1.38733 * 120.03752 * 186.16712 * 10 9 7 25 25 H 0.97005 * 119.99579 * 0.02562 * 1 2 3 26 26 H 1.08005 * 119.96836 * 359.97438 * 11 10 9 27 27 H 1.07998 * 119.93090 * 180.02562 * 12 11 10 28 28 H 1.07990 * 119.96910 * 179.97438 * 13 12 11 29 29 H 0.97003 * 120.00328 * 326.41626 * 15 14 13 30 30 H 1.09010 * 117.49735 * 359.97438 * 20 18 16 31 31 H 1.09000 * 117.49939 * 144.96481 * 20 18 16 32 32 H 1.07994 * 120.06889 * 0.04546 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4972 2.0465 -1.4001 5 1 1.4471 2.6527 0.7000 6 1 3.5473 1.4401 0.7000 7 6 2.0088 -1.2007 -0.0005 8 1 3.0889 -1.2008 -0.0010 9 8 1.3347 -2.3684 -0.0016 10 6 2.0692 -3.5044 0.1120 11 6 3.4368 -3.4276 0.3457 12 6 4.1850 -4.5829 0.4619 13 6 3.5763 -5.8183 0.3469 14 6 2.2094 -5.9016 0.1133 15 7 1.5938 -7.1528 -0.0035 16 6 0.3312 -7.3262 0.4349 17 8 -0.2382 -6.4262 1.0154 18 6 -0.3731 -8.6382 0.2039 19 1 -0.1286 -9.1451 -0.7295 20 6 -1.8044 -8.7735 0.7273 21 6 -0.6611 -9.5109 1.4272 22 17 -0.5701 -11.2990 1.2142 23 17 -0.1316 -8.8910 3.0354 24 6 1.4562 -4.7429 -0.0103 25 1 -0.4850 0.8401 -0.0004 26 1 3.9154 -2.4637 0.4364 27 1 5.2477 -4.5207 0.6439 28 1 4.1640 -6.7198 0.4379 29 1 2.0759 -7.8953 -0.4000 30 1 -2.2365 -7.9135 1.2391 31 1 -2.5017 -9.3689 0.1379 32 1 0.3943 -4.8050 -0.1967 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000298565811.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:47:10 Heat of formation + Delta-G solvation = -13.027536 kcal Electronic energy + Delta-G solvation = -20681.671159 eV Core-core repulsion = 17082.275032 eV Total energy + Delta-G solvation = -3599.396126 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 315.022 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.50581 -38.88476 -37.66047 -36.55943 -36.32837 -35.32781 -34.16915 -32.25657 -29.62639 -28.64406 -25.47492 -24.84212 -22.65378 -22.11935 -21.29982 -20.10313 -18.28813 -18.06455 -17.11732 -16.31600 -15.71576 -15.22160 -15.09777 -14.76285 -14.21145 -14.05561 -13.61969 -13.56601 -13.30096 -12.77096 -12.62098 -12.49083 -12.33254 -11.75565 -11.57198 -11.52619 -11.25831 -11.18535 -10.99166 -10.93007 -10.81000 -10.46746 -10.29844 -9.95756 -9.76648 -9.28755 -8.82192 -7.73766 -7.21025 -6.43018 -4.02349 0.74422 1.76004 1.81852 2.30485 2.41746 2.99188 3.12514 3.14337 3.17613 3.20050 3.79202 3.93512 3.98133 4.48739 4.59861 4.73935 5.12062 5.13604 5.32202 5.45330 5.60199 5.80021 6.07010 6.17433 6.33386 6.61881 6.81404 6.99202 7.05412 7.32496 7.44399 7.57488 7.74653 8.01388 8.19419 9.01878 9.72474 10.74795 Molecular weight = 315.02amu Principal moments of inertia in cm(-1) A = 0.025512 B = 0.002976 C = 0.002816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.237857 B = 9405.655735 C = 9939.223308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.039 3.961 3 Si 0.942 3.058 4 H -0.273 1.273 5 H -0.277 1.277 6 H -0.267 1.267 7 C -0.392 4.392 8 H 0.093 0.907 9 O -0.173 6.173 10 C 0.168 3.832 11 C -0.243 4.243 12 C -0.058 4.058 13 C -0.234 4.234 14 C 0.177 3.823 15 N -0.660 5.660 16 C 0.535 3.465 17 O -0.488 6.488 18 C -0.159 4.159 19 H 0.148 0.852 20 C -0.109 4.109 21 C 0.015 3.985 22 Cl -0.090 7.090 23 Cl -0.070 7.070 24 C -0.188 4.188 25 H 0.270 0.730 26 H 0.128 0.872 27 H 0.112 0.888 28 H 0.109 0.891 29 H 0.407 0.593 30 H 0.137 0.863 31 H 0.131 0.869 32 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.733 -20.077 -0.318 20.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.165 4.165 3 Si 0.766 3.234 4 H -0.199 1.199 5 H -0.203 1.203 6 H -0.192 1.192 7 C -0.468 4.468 8 H 0.110 0.890 9 O -0.076 6.076 10 C 0.113 3.887 11 C -0.263 4.263 12 C -0.077 4.077 13 C -0.255 4.255 14 C 0.084 3.916 15 N -0.304 5.304 16 C 0.319 3.681 17 O -0.361 6.361 18 C -0.181 4.181 19 H 0.166 0.834 20 C -0.147 4.147 21 C -0.037 4.037 22 Cl -0.063 7.063 23 Cl -0.043 7.043 24 C -0.209 4.209 25 H 0.080 0.920 26 H 0.146 0.854 27 H 0.130 0.870 28 H 0.127 0.873 29 H 0.242 0.758 30 H 0.155 0.845 31 H 0.149 0.851 32 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -0.120 -19.311 0.195 19.313 hybrid contribution 0.945 0.181 -0.092 0.967 sum 0.825 -19.130 0.104 19.148 Atomic orbital electron populations 1.70057 1.05970 1.27670 1.45744 1.25306 0.95844 0.98852 0.96539 0.85708 0.78916 0.80073 0.78688 1.19880 1.20262 1.19174 1.21336 0.91799 0.80784 1.52900 0.89007 1.84004 1.34178 1.11374 1.78044 1.19102 0.90080 0.87710 0.91795 1.21199 0.94265 0.99065 1.11753 1.20514 0.98427 0.91635 0.97077 1.20261 0.92894 0.97614 1.14723 1.17122 0.91520 0.83182 0.99755 1.43222 1.14153 1.11924 1.61141 1.19257 0.81924 0.87734 0.79179 1.90844 1.64884 1.42148 1.38184 1.23264 1.00810 0.96022 0.97994 0.83394 1.23977 0.90179 1.01595 0.98916 1.26504 1.08465 0.82153 0.86577 1.98757 1.98566 1.12307 1.96622 1.98802 1.91192 1.86038 1.28220 1.19981 1.00648 0.88811 1.11446 0.92000 0.85398 0.86976 0.87305 0.75753 0.84456 0.85106 0.85370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.59 13.67 55.48 0.76 -24.83 16 2 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 3 Si 0.94 20.63 29.55 -169.99 -5.02 15.61 16 4 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 5 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 6 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 7 C -0.39 -11.07 9.44 30.88 0.29 -10.78 16 8 H 0.09 2.38 5.30 -52.48 -0.28 2.10 16 9 O -0.17 -5.07 9.75 0.04 0.00 -5.07 16 10 C 0.17 4.18 6.64 -39.13 -0.26 3.92 16 11 C -0.24 -5.30 9.13 -39.36 -0.36 -5.66 16 12 C -0.06 -1.04 10.03 -39.64 -0.40 -1.44 16 13 C -0.23 -3.94 9.96 -39.34 -0.39 -4.33 16 14 C 0.18 3.22 6.27 -83.72 -0.52 2.69 16 15 N -0.66 -9.12 5.34 -9.88 -0.05 -9.17 16 16 C 0.53 7.65 6.44 -10.98 -0.07 7.58 16 17 O -0.49 -9.24 13.82 5.55 0.08 -9.16 16 18 C -0.16 -1.52 6.03 -91.78 -0.55 -2.07 16 19 H 0.15 0.94 8.14 -51.93 -0.42 0.52 16 20 C -0.11 -0.94 9.73 -26.73 -0.26 -1.20 16 21 C 0.02 0.15 3.61 -26.73 -0.10 0.05 16 22 Cl -0.09 -0.77 29.29 -51.86 -1.52 -2.28 16 23 Cl -0.07 -0.87 28.19 -51.86 -1.46 -2.33 16 24 C -0.19 -4.21 8.60 -39.21 -0.34 -4.55 16 25 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 26 H 0.13 2.78 5.71 -52.48 -0.30 2.48 16 27 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 28 H 0.11 1.48 8.06 -52.49 -0.42 1.05 16 29 H 0.41 3.94 8.82 -40.82 -0.36 3.58 16 30 H 0.14 1.40 7.67 -51.92 -0.40 1.00 16 31 H 0.13 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.13 3.04 6.45 -52.49 -0.34 2.70 16 LS Contribution 316.96 15.07 4.78 4.78 Total: -1.00 -33.44 316.96 -8.00 -41.44 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -2.50 Total: 5.81 kcal Atomic # 6 Polarization: -11.74 SS G_CDS: -3.06 Total: -14.80 kcal Atomic # 7 Polarization: -34.71 SS G_CDS: 0.71 Total: -34.00 kcal Atomic # 8 Polarization: -14.30 SS G_CDS: 0.08 Total: -14.23 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Atomic # 17 Polarization: -1.64 SS G_CDS: -2.98 Total: -4.62 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -33.44 -8.00 -41.44 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298565811.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.416 kcal (2) G-P(sol) polarization free energy of solvation -33.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds