Wall clock time and date at job start Tue Mar 31 2020 10:47:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31564 * 1 3 3 Si 1.86800 * 119.99980 * 2 1 4 4 H 1.48506 * 109.47282 * 269.99857 * 3 2 1 5 5 H 1.48493 * 109.47332 * 29.99834 * 3 2 1 6 6 H 1.48506 * 109.46923 * 150.00274 * 3 2 1 7 7 C 1.38645 * 119.99859 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00046 * 179.97438 * 7 2 1 9 9 O 1.34836 * 120.00291 * 0.02562 * 7 2 1 10 10 C 1.35748 * 117.00522 * 185.41265 * 9 7 2 11 11 C 1.38950 * 120.02962 * 5.91201 * 10 9 7 12 12 C 1.38130 * 120.07182 * 179.97438 * 11 10 9 13 13 C 1.38200 * 120.13969 * 359.97438 * 12 11 10 14 14 C 1.38928 * 120.06023 * 0.02562 * 13 12 11 15 15 N 1.39924 * 120.03161 * 179.97438 * 14 13 12 16 16 C 1.34783 * 119.99823 * 146.40910 * 15 14 13 17 17 O 1.21286 * 119.99848 * 354.79692 * 16 15 14 18 18 C 1.50696 * 119.99992 * 174.80297 * 16 15 14 19 19 H 1.09001 * 115.55202 * 325.58176 * 18 16 15 20 20 C 1.52996 * 117.50095 * 179.91080 * 18 16 15 21 21 C 1.52997 * 60.00128 * 252.48534 * 20 18 16 22 22 Cl 1.80297 * 117.49605 * 252.50976 * 21 20 18 23 23 Cl 1.80302 * 117.49966 * 107.48836 * 21 20 18 24 24 C 1.38733 * 120.03752 * 186.16712 * 10 9 7 25 25 H 0.97005 * 119.99579 * 0.02562 * 1 2 3 26 26 H 1.08005 * 119.96836 * 359.97438 * 11 10 9 27 27 H 1.07998 * 119.93090 * 180.02562 * 12 11 10 28 28 H 1.07990 * 119.96910 * 179.97438 * 13 12 11 29 29 H 0.97003 * 120.00328 * 326.41626 * 15 14 13 30 30 H 1.09010 * 117.49735 * 359.97438 * 20 18 16 31 31 H 1.09000 * 117.49939 * 144.96481 * 20 18 16 32 32 H 1.07994 * 120.06889 * 0.04546 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4972 2.0465 -1.4001 5 1 1.4471 2.6527 0.7000 6 1 3.5473 1.4401 0.7000 7 6 2.0088 -1.2007 -0.0005 8 1 3.0889 -1.2008 -0.0010 9 8 1.3347 -2.3684 -0.0016 10 6 2.0692 -3.5044 0.1120 11 6 3.4368 -3.4276 0.3457 12 6 4.1850 -4.5829 0.4619 13 6 3.5763 -5.8183 0.3469 14 6 2.2094 -5.9016 0.1133 15 7 1.5938 -7.1528 -0.0035 16 6 0.3312 -7.3262 0.4349 17 8 -0.2382 -6.4262 1.0154 18 6 -0.3731 -8.6382 0.2039 19 1 -0.1286 -9.1451 -0.7295 20 6 -1.8044 -8.7735 0.7273 21 6 -0.6611 -9.5109 1.4272 22 17 -0.5701 -11.2990 1.2142 23 17 -0.1316 -8.8910 3.0354 24 6 1.4562 -4.7429 -0.0103 25 1 -0.4850 0.8401 -0.0004 26 1 3.9154 -2.4637 0.4364 27 1 5.2477 -4.5207 0.6439 28 1 4.1640 -6.7198 0.4379 29 1 2.0759 -7.8953 -0.4000 30 1 -2.2365 -7.9135 1.2391 31 1 -2.5017 -9.3689 0.1379 32 1 0.3943 -4.8050 -0.1967 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000298565811.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:47:10 Heat of formation + Delta-G solvation = -35.548392 kcal Electronic energy + Delta-G solvation = -20682.647736 eV Core-core repulsion = 17082.275032 eV Total energy + Delta-G solvation = -3600.372704 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 315.022 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.76260 -40.50412 -38.81632 -37.95957 -37.15901 -36.21219 -35.59538 -34.26072 -31.25923 -30.21949 -27.38495 -26.08147 -23.61953 -23.39444 -22.90644 -21.29467 -19.99462 -19.28842 -18.74640 -17.41172 -17.00309 -16.76732 -16.60253 -16.11637 -15.75265 -15.61964 -15.47233 -14.69877 -14.45826 -14.22788 -14.02298 -13.58688 -13.37998 -13.22482 -13.07154 -12.92157 -12.65391 -12.38589 -12.34093 -12.13122 -12.00913 -11.76377 -11.51097 -11.33810 -11.09446 -10.86278 -10.75094 -9.35160 -8.88556 -8.46611 -6.16050 -0.05992 0.37694 0.69678 0.93935 1.25628 1.34935 1.45631 1.53474 1.91011 2.18695 2.23480 2.82335 2.97495 3.15302 3.18119 3.35907 3.71476 4.09166 4.12917 4.36511 4.40931 4.54684 4.67227 4.71826 4.73990 5.02946 5.11426 5.37835 5.42122 5.62980 5.73729 6.02659 6.17835 6.36813 6.97269 7.06152 7.79267 8.77109 Molecular weight = 315.02amu Principal moments of inertia in cm(-1) A = 0.025512 B = 0.002976 C = 0.002816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.237857 B = 9405.655735 C = 9939.223308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.026 4.026 3 Si 1.022 2.978 4 H -0.261 1.261 5 H -0.273 1.273 6 H -0.250 1.250 7 C -0.413 4.413 8 H 0.106 0.894 9 O -0.234 6.234 10 C 0.128 3.872 11 C -0.255 4.255 12 C -0.049 4.049 13 C -0.205 4.205 14 C 0.187 3.813 15 N -0.647 5.647 16 C 0.530 3.470 17 O -0.540 6.540 18 C -0.151 4.151 19 H 0.191 0.809 20 C -0.103 4.103 21 C 0.017 3.983 22 Cl -0.070 7.070 23 Cl -0.101 7.101 24 C -0.211 4.211 25 H 0.272 0.728 26 H 0.122 0.878 27 H 0.158 0.842 28 H 0.162 0.838 29 H 0.432 0.568 30 H 0.117 0.883 31 H 0.168 0.832 32 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.385 -23.014 -0.889 23.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.223 4.223 3 Si 0.841 3.159 4 H -0.186 1.186 5 H -0.198 1.198 6 H -0.173 1.173 7 C -0.489 4.489 8 H 0.123 0.877 9 O -0.141 6.141 10 C 0.077 3.923 11 C -0.275 4.275 12 C -0.067 4.067 13 C -0.225 4.225 14 C 0.092 3.908 15 N -0.294 5.294 16 C 0.317 3.683 17 O -0.416 6.416 18 C -0.173 4.173 19 H 0.208 0.792 20 C -0.140 4.140 21 C -0.036 4.036 22 Cl -0.043 7.043 23 Cl -0.074 7.074 24 C -0.232 4.232 25 H 0.081 0.919 26 H 0.140 0.860 27 H 0.176 0.824 28 H 0.180 0.820 29 H 0.272 0.728 30 H 0.135 0.865 31 H 0.186 0.814 32 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 2.582 -22.357 -0.393 22.509 hybrid contribution 0.200 0.665 0.084 0.700 sum 2.782 -21.692 -0.309 21.872 Atomic orbital electron populations 1.70222 1.08225 1.28786 1.48901 1.26683 0.96860 1.02959 0.95821 0.84545 0.77803 0.74222 0.79340 1.18600 1.19786 1.17346 1.21878 0.92624 0.81272 1.53139 0.87723 1.83964 1.36101 1.12707 1.81294 1.19653 0.91690 0.87367 0.93614 1.21336 0.93169 1.00652 1.12298 1.21032 1.00383 0.90454 0.94852 1.20884 0.92207 0.99235 1.10206 1.17245 0.92176 0.83595 0.97756 1.43172 1.14346 1.11001 1.60848 1.20077 0.81638 0.88859 0.77714 1.90846 1.65950 1.44463 1.40325 1.23312 1.00878 0.93526 0.99537 0.79237 1.24142 0.90297 1.01114 0.98492 1.26515 1.09022 0.83049 0.84966 1.98766 1.98551 1.10563 1.96398 1.98801 1.91491 1.86622 1.30529 1.20026 0.99940 0.89993 1.13253 0.91886 0.85985 0.82396 0.82030 0.72803 0.86495 0.81421 0.88119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -58.65 13.67 21.61 0.30 -58.36 16 2 C -0.03 -1.53 5.49 84.83 0.47 -1.06 16 3 Si 1.02 43.65 29.55 68.60 2.03 45.68 16 4 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 5 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 6 H -0.25 -9.80 7.11 99.48 0.71 -9.10 16 7 C -0.41 -24.73 9.44 67.92 0.64 -24.09 16 8 H 0.11 5.66 5.30 -2.91 -0.02 5.65 16 9 O -0.23 -14.83 9.75 -22.77 -0.22 -15.05 16 10 C 0.13 6.70 6.64 22.56 0.15 6.85 16 11 C -0.25 -11.14 9.13 22.41 0.20 -10.94 16 12 C -0.05 -1.59 10.03 22.23 0.22 -1.36 16 13 C -0.20 -5.99 9.96 22.43 0.22 -5.77 16 14 C 0.19 6.47 6.27 38.14 0.24 6.71 16 15 N -0.65 -16.22 5.34 -303.55 -1.62 -17.84 16 16 C 0.53 14.59 6.44 87.65 0.56 15.15 16 17 O -0.54 -21.12 13.82 -3.05 -0.04 -21.16 16 18 C -0.15 -2.48 6.03 -11.54 -0.07 -2.55 16 19 H 0.19 1.51 8.14 -2.39 -0.02 1.49 16 20 C -0.10 -1.58 9.73 30.59 0.30 -1.28 16 21 C 0.02 0.29 3.61 30.59 0.11 0.40 16 22 Cl -0.07 -0.98 29.29 -2.72 -0.08 -1.05 16 23 Cl -0.10 -2.46 28.19 -2.72 -0.08 -2.54 16 24 C -0.21 -9.85 8.60 22.51 0.19 -9.66 16 25 H 0.27 15.80 8.31 -92.70 -0.77 15.03 16 26 H 0.12 5.38 5.71 -2.91 -0.02 5.36 16 27 H 0.16 3.76 8.06 -2.91 -0.02 3.73 16 28 H 0.16 3.17 8.06 -2.92 -0.02 3.14 16 29 H 0.43 6.42 8.82 -92.71 -0.82 5.61 16 30 H 0.12 2.39 7.67 -2.38 -0.02 2.37 16 31 H 0.17 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.10 5.19 6.45 -2.91 -0.02 5.17 16 Total: -1.00 -82.47 316.96 3.90 -78.57 By element: Atomic # 1 Polarization: 18.97 SS G_CDS: 0.38 Total: 19.35 kcal Atomic # 6 Polarization: -30.84 SS G_CDS: 3.24 Total: -27.60 kcal Atomic # 7 Polarization: -74.87 SS G_CDS: -1.33 Total: -76.20 kcal Atomic # 8 Polarization: -35.94 SS G_CDS: -0.26 Total: -36.21 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Atomic # 17 Polarization: -3.44 SS G_CDS: -0.16 Total: -3.59 kcal Total: -82.47 3.90 -78.57 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298565811.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.017 kcal (2) G-P(sol) polarization free energy of solvation -82.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds