Wall clock time and date at job start Tue Mar 31 2020 10:42:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.46821 * 2 1 4 4 N 1.46496 * 109.47129 * 240.00164 * 2 1 3 5 5 C 1.34777 * 120.00258 * 85.00009 * 4 2 1 6 6 O 1.21682 * 119.99992 * 359.97438 * 5 4 2 7 7 C 1.46376 * 119.99803 * 180.02562 * 5 4 2 8 8 H 1.07995 * 120.00124 * 359.71785 * 7 5 4 9 9 C 1.40050 * 119.99863 * 180.02562 * 7 5 4 10 10 N 1.30676 * 119.99974 * 359.97438 * 9 7 5 11 11 Si 1.86800 * 120.00158 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47086 * 59.99576 * 11 9 7 13 13 H 1.48503 * 109.47155 * 179.97438 * 11 9 7 14 14 H 1.48500 * 109.46879 * 299.99519 * 11 9 7 15 15 C 1.50698 * 109.47254 * 119.99584 * 2 1 3 16 16 C 1.38265 * 119.97062 * 260.00460 * 15 2 1 17 17 C 1.38197 * 120.04294 * 179.97438 * 16 15 2 18 18 C 1.38452 * 119.97985 * 0.02562 * 17 16 15 19 19 F 1.35104 * 120.02404 * 180.02562 * 18 17 16 20 20 C 1.38518 * 119.94618 * 359.97438 * 18 17 16 21 21 Br 1.89100 * 120.02377 * 179.97438 * 20 18 17 22 22 C 1.38214 * 119.96776 * 79.72703 * 15 2 1 23 23 H 1.09006 * 109.47229 * 60.00541 * 1 2 3 24 24 H 1.09002 * 109.46821 * 179.97438 * 1 2 3 25 25 H 1.08992 * 109.47302 * 300.00204 * 1 2 3 26 26 H 0.96999 * 119.99694 * 264.99399 * 4 2 1 27 27 H 0.96996 * 119.99793 * 180.02562 * 10 9 7 28 28 H 1.08003 * 119.97767 * 359.97438 * 16 15 2 29 29 H 1.07998 * 120.00764 * 179.97438 * 17 16 15 30 30 H 1.08001 * 119.99226 * 0.02562 * 22 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1471 -0.0182 -2.3571 6 8 1.8572 1.1623 -2.4119 7 6 2.6345 -0.7084 -3.5524 8 1 2.8952 -1.7553 -3.5028 9 6 2.7687 -0.0097 -4.7587 10 7 2.4585 1.2584 -4.8172 11 14 3.3914 -0.8903 -6.2839 12 1 2.4748 -2.0099 -6.6179 13 1 3.4414 0.0640 -7.4207 14 1 4.7525 -1.4250 -6.0256 15 6 2.0324 -0.7103 1.2305 16 6 2.4586 0.0204 2.3242 17 6 2.9191 -0.6295 3.4535 18 6 2.9541 -2.0131 3.4897 19 9 3.4036 -2.6493 4.5935 20 6 2.5269 -2.7445 2.3937 21 35 2.5745 -4.6343 2.4404 22 6 2.0612 -2.0917 1.2669 23 1 -0.3634 0.5138 -0.8901 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 2.2491 -1.6317 -1.1525 27 1 2.5511 1.7422 -5.6528 28 1 2.4317 1.0997 2.2958 29 1 3.2523 -0.0582 4.3073 30 1 1.7241 -2.6613 0.4135 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335775842.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:42:00 Heat of formation + Delta-G solvation = -82.146915 kcal Electronic energy + Delta-G solvation = -17788.347581 eV Core-core repulsion = 14543.190153 eV Total energy + Delta-G solvation = -3245.157429 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 315.001 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -50.05877 -40.79939 -39.14149 -36.05813 -34.52462 -33.56413 -32.05432 -30.76232 -29.76433 -28.16676 -24.94926 -24.08237 -22.45437 -21.09689 -19.47668 -18.74920 -17.76590 -17.37788 -16.87300 -16.79049 -15.94749 -15.73485 -15.12961 -15.04277 -14.66239 -14.40206 -14.30821 -14.12705 -13.66792 -13.34317 -13.10264 -12.71703 -12.65438 -12.58187 -12.28052 -12.03049 -11.99559 -11.89189 -11.37089 -10.90146 -10.05997 -9.86739 -9.67799 -9.46827 -8.26989 -6.83141 -0.19497 -0.00027 0.41023 1.41686 1.44262 1.55633 2.24291 2.31960 2.50335 2.98851 3.10538 3.46114 3.61772 3.67121 4.05809 4.07764 4.32833 4.45291 4.51701 4.70164 4.78579 4.84554 4.95833 5.04042 5.26942 5.33856 5.39965 5.60818 5.89917 6.22955 6.29680 6.89543 7.53774 8.51337 8.69369 Molecular weight = 315.00amu Principal moments of inertia in cm(-1) A = 0.019261 B = 0.003946 C = 0.003469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.382191 B = 7093.809496 C = 8069.984756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.190 3.810 3 H 0.067 0.933 4 N -0.750 5.750 5 C 0.544 3.456 6 O -0.625 6.625 7 C -0.575 4.575 8 H 0.084 0.916 9 C 0.033 3.967 10 N -0.819 5.819 11 Si 0.992 3.008 12 H -0.255 1.255 13 H -0.275 1.275 14 H -0.256 1.256 15 C -0.087 4.087 16 C -0.063 4.063 17 C -0.132 4.132 18 C 0.110 3.890 19 F -0.130 7.130 20 C -0.135 4.135 21 Br -0.030 7.030 22 C -0.060 4.060 23 H 0.032 0.968 24 H 0.063 0.937 25 H 0.082 0.918 26 H 0.391 0.609 27 H 0.274 0.726 28 H 0.161 0.839 29 H 0.176 0.824 30 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.352 -10.058 16.985 19.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.085 3.915 3 H 0.085 0.915 4 N -0.405 5.405 5 C 0.348 3.652 6 O -0.512 6.512 7 C -0.612 4.612 8 H 0.102 0.898 9 C -0.183 4.183 10 N -0.449 5.449 11 Si 0.812 3.188 12 H -0.179 1.179 13 H -0.199 1.199 14 H -0.180 1.180 15 C -0.089 4.089 16 C -0.082 4.082 17 C -0.151 4.151 18 C 0.089 3.911 19 F -0.108 7.108 20 C -0.216 4.216 21 Br 0.055 6.945 22 C -0.080 4.080 23 H 0.051 0.949 24 H 0.082 0.918 25 H 0.101 0.899 26 H 0.225 0.775 27 H 0.084 0.916 28 H 0.178 0.822 29 H 0.193 0.807 30 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 0.155 -9.780 16.927 19.549 hybrid contribution 0.316 -0.291 -0.636 0.768 sum 0.470 -10.071 16.290 19.158 Atomic orbital electron populations 1.22087 0.94531 1.02218 1.01665 1.19456 0.94132 0.95743 0.82195 0.91534 1.45991 1.72292 1.13240 1.09004 1.18467 0.77497 0.86024 0.83207 1.90553 1.56770 1.18313 1.85595 1.21400 1.47316 0.98270 0.94210 0.89751 1.26871 0.92802 0.95091 1.03492 1.70164 1.36567 1.10376 1.27784 0.85151 0.79667 0.78441 0.75551 1.17949 1.19938 1.18046 1.20085 0.99561 0.93275 0.95964 1.21312 0.94192 1.01904 0.90798 1.21384 1.01735 0.90999 1.00949 1.17552 0.99500 0.91216 0.82873 1.91535 1.86526 1.82252 1.50504 1.21935 1.10140 0.91860 0.97639 1.96734 1.97881 1.00881 1.98995 1.20840 0.96739 0.94081 0.96298 0.94881 0.91824 0.89909 0.77453 0.91609 0.82162 0.80695 0.83974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.75 9.46 71.98 0.68 -4.07 16 2 C 0.19 6.70 2.77 44.25 0.12 6.82 16 3 H 0.07 2.66 7.44 -2.39 -0.02 2.64 16 4 N -0.75 -31.93 5.02 -450.41 -2.26 -34.20 16 5 C 0.54 30.39 7.71 86.36 0.67 31.06 16 6 O -0.63 -40.24 14.68 -4.29 -0.06 -40.30 16 7 C -0.58 -31.95 9.54 24.83 0.24 -31.71 16 8 H 0.08 4.22 7.85 -2.91 -0.02 4.19 16 9 C 0.03 1.80 5.50 85.30 0.47 2.27 16 10 N -0.82 -49.30 11.83 21.84 0.26 -49.04 16 11 Si 0.99 40.45 29.56 68.60 2.03 42.47 16 12 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16 13 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 14 H -0.26 -9.90 7.11 99.48 0.71 -9.19 16 15 C -0.09 -2.35 4.95 -19.86 -0.10 -2.45 16 16 C -0.06 -1.36 9.67 22.27 0.22 -1.15 16 17 C -0.13 -2.48 10.03 22.31 0.22 -2.26 16 18 C 0.11 2.49 7.27 22.39 0.16 2.65 16 19 F -0.13 -2.98 16.73 44.97 0.75 -2.23 16 20 C -0.14 -3.30 6.23 22.35 0.14 -3.16 16 21 Br -0.03 -0.69 33.28 -20.37 -0.68 -1.37 16 22 C -0.06 -1.53 8.79 22.28 0.20 -1.34 16 23 H 0.03 1.30 8.14 -2.38 -0.02 1.28 16 24 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 25 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 26 H 0.39 14.63 6.86 -92.71 -0.64 13.99 16 27 H 0.27 15.00 8.29 -92.71 -0.77 14.23 16 28 H 0.16 2.83 8.04 -2.91 -0.02 2.80 16 29 H 0.18 2.18 8.06 -2.91 -0.02 2.16 16 30 H 0.14 3.61 6.93 -2.91 -0.02 3.59 16 Total: -1.00 -71.15 292.23 3.60 -67.55 By element: Atomic # 1 Polarization: 19.90 SS G_CDS: 0.55 Total: 20.45 kcal Atomic # 6 Polarization: -6.35 SS G_CDS: 3.01 Total: -3.33 kcal Atomic # 7 Polarization: -81.24 SS G_CDS: -2.00 Total: -83.24 kcal Atomic # 8 Polarization: -40.24 SS G_CDS: -0.06 Total: -40.30 kcal Atomic # 9 Polarization: -2.98 SS G_CDS: 0.75 Total: -2.23 kcal Atomic # 14 Polarization: 40.45 SS G_CDS: 2.03 Total: 42.47 kcal Atomic # 35 Polarization: -0.69 SS G_CDS: -0.68 Total: -1.37 kcal Total: -71.15 3.60 -67.55 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335775842.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.599 kcal (2) G-P(sol) polarization free energy of solvation -71.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds