Wall clock time and date at job start Tue Mar 31 2020 10:43:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.76198 * 102.99932 * 2 1 4 4 C 1.38971 * 120.07738 * 0.02562 * 3 2 1 5 5 C 1.38153 * 119.91361 * 179.97438 * 4 3 2 6 6 Br 1.89098 * 119.97204 * 179.97438 * 5 4 3 7 7 C 1.38415 * 120.05784 * 359.97438 * 5 4 3 8 8 C 1.38268 * 120.15126 * 359.73023 * 7 5 4 9 9 C 1.38113 * 120.08713 * 0.54685 * 8 7 5 10 10 C 1.50703 * 120.02923 * 179.72421 * 9 8 7 11 11 N 1.46899 * 109.47107 * 259.72803 * 10 9 8 12 12 C 1.46904 * 111.00029 * 179.97438 * 11 10 9 13 13 C 1.50696 * 109.46800 * 180.02562 * 12 11 10 14 14 H 1.08002 * 120.00575 * 0.02562 * 13 12 11 15 15 C 1.37880 * 119.99722 * 180.02562 * 13 12 11 16 16 N 1.31515 * 119.99924 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00036 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47138 * 90.00010 * 17 15 13 19 19 H 1.48502 * 109.46886 * 209.99874 * 17 15 13 20 20 H 1.48495 * 109.47039 * 329.99931 * 17 15 13 21 21 H 1.08997 * 109.46865 * 60.00024 * 1 2 3 22 22 H 1.09000 * 109.46921 * 179.97438 * 1 2 3 23 23 H 1.08994 * 109.47127 * 300.00409 * 1 2 3 24 24 H 1.08001 * 120.04530 * 359.95263 * 4 3 2 25 25 H 1.08000 * 119.92683 * 180.02562 * 7 5 4 26 26 H 1.08005 * 119.95892 * 180.27677 * 8 7 5 27 27 H 1.09002 * 109.47152 * 139.72890 * 10 9 8 28 28 H 1.09001 * 109.46980 * 19.72990 * 10 9 8 29 29 H 1.00902 * 111.00582 * 303.95889 * 11 10 9 30 30 H 1.08995 * 109.47167 * 300.00240 * 12 11 10 31 31 H 1.09003 * 109.46442 * 60.00214 * 12 11 10 32 32 H 0.96998 * 120.00185 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 1.1953 2.6660 0.0005 5 6 1.5099 4.0112 0.0011 6 35 0.1299 5.3041 0.0011 7 6 2.8343 4.4134 0.0016 8 6 3.8463 3.4713 0.0072 9 6 3.5387 2.1248 0.0009 10 6 4.6428 1.0991 0.0008 11 7 4.8382 0.5901 -1.3633 12 6 5.9098 -0.4139 -1.4021 13 6 6.0812 -0.9112 -2.8143 14 1 5.4568 -0.5202 -3.6041 15 6 7.0351 -1.8655 -3.0981 16 7 7.7957 -2.3412 -2.1365 17 14 7.2481 -2.4814 -4.8487 18 1 8.2433 -1.6344 -5.5539 19 1 7.7240 -3.8879 -4.8241 20 1 5.9463 -2.4117 -5.5598 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5139 0.8899 24 1 0.1618 2.3524 0.0002 25 1 3.0778 5.4656 0.0024 26 1 4.8786 3.7886 0.0122 27 1 4.3730 0.2748 0.6610 28 1 5.5662 1.5591 0.3528 29 1 3.9784 0.2165 -1.7365 30 1 6.8418 0.0360 -1.0601 31 1 5.6491 -1.2488 -0.7516 32 1 8.4666 -3.0128 -2.3361 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336734166.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:43:39 Heat of formation + Delta-G solvation = 21.270120 kcal Electronic energy + Delta-G solvation = -15661.592783 eV Core-core repulsion = 12987.133030 eV Total energy + Delta-G solvation = -2674.459753 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 314.999 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.38262 -35.50726 -32.98793 -31.84933 -31.51822 -29.81247 -28.85734 -26.79789 -24.21775 -23.10188 -21.52042 -21.02176 -17.48069 -16.59402 -16.00075 -15.74760 -14.76067 -14.51677 -14.36424 -14.18309 -14.01299 -13.52190 -13.21229 -12.91152 -12.62664 -12.35135 -11.67940 -11.63206 -11.28658 -11.08543 -11.04202 -10.73931 -10.63443 -10.49017 -10.12505 -9.90493 -9.71171 -9.19670 -8.76152 -8.45814 -7.42718 -7.28953 -6.01711 -4.03314 0.99864 1.13169 1.40271 1.52703 2.39722 3.33892 3.39417 3.43258 3.47309 4.45106 4.65638 4.85142 4.91611 4.92502 5.01528 5.23390 5.34438 5.42282 5.51366 5.54932 5.67214 5.86369 5.94425 6.12036 6.16559 6.54544 6.67276 7.22454 7.42768 7.78493 8.12038 8.37864 8.59437 9.05455 9.61308 11.09451 Molecular weight = 315.00amu Principal moments of inertia in cm(-1) A = 0.023397 B = 0.003235 C = 0.003080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.430752 B = 8652.287163 C = 9087.536276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 S -0.082 6.082 3 C -0.082 4.082 4 C -0.107 4.107 5 C -0.079 4.079 6 Br -0.059 7.059 7 C -0.097 4.097 8 C -0.081 4.081 9 C -0.030 4.030 10 C 0.088 3.912 11 N -0.681 5.681 12 C 0.194 3.806 13 C -0.512 4.512 14 H 0.062 0.938 15 C 0.056 3.944 16 N -0.898 5.898 17 Si 0.899 3.101 18 H -0.280 1.280 19 H -0.287 1.287 20 H -0.273 1.273 21 H 0.084 0.916 22 H 0.109 0.891 23 H 0.081 0.919 24 H 0.130 0.870 25 H 0.133 0.867 26 H 0.139 0.861 27 H 0.039 0.961 28 H 0.079 0.921 29 H 0.335 0.665 30 H 0.028 0.972 31 H -0.011 1.011 32 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.373 13.654 7.770 23.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.326 4.326 2 S 0.161 5.839 3 C -0.196 4.196 4 C -0.133 4.133 5 C -0.160 4.160 6 Br 0.026 6.974 7 C -0.119 4.119 8 C -0.102 4.102 9 C -0.036 4.036 10 C -0.042 4.042 11 N -0.312 5.312 12 C 0.068 3.932 13 C -0.551 4.551 14 H 0.080 0.920 15 C -0.145 4.145 16 N -0.538 5.538 17 Si 0.727 3.273 18 H -0.206 1.206 19 H -0.213 1.213 20 H -0.198 1.198 21 H 0.103 0.897 22 H 0.127 0.873 23 H 0.100 0.900 24 H 0.148 0.852 25 H 0.151 0.849 26 H 0.157 0.843 27 H 0.057 0.943 28 H 0.097 0.903 29 H 0.152 0.848 30 H 0.047 0.953 31 H 0.007 0.993 32 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -16.689 13.414 7.615 22.725 hybrid contribution -0.802 -0.277 -0.501 0.985 sum -17.491 13.137 7.114 23.003 Atomic orbital electron populations 1.23765 0.96275 1.07151 1.05412 1.86089 1.04727 1.01356 1.91729 1.21719 0.95852 0.97082 1.04945 1.20980 0.98750 0.91038 1.02520 1.21531 0.93008 0.92582 1.08882 1.96675 1.48428 1.54481 1.97841 1.21100 0.90570 1.00342 0.99914 1.21063 0.99612 0.91393 0.98139 1.19896 0.92392 0.95280 0.96060 1.20950 0.95075 0.94651 0.93515 1.60809 1.11602 1.42778 1.16058 1.19583 0.89020 0.87518 0.97073 1.21159 1.18663 1.21403 0.93857 0.91955 1.24973 0.95747 0.96361 0.97416 1.69961 1.22041 1.29819 1.31946 0.86485 0.78437 0.77836 0.84579 1.20628 1.21309 1.19818 0.89743 0.87291 0.89982 0.85173 0.84938 0.84307 0.94318 0.90268 0.84788 0.95345 0.99318 0.92924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.48 9.15 101.05 0.92 -0.55 16 2 S -0.08 -1.15 20.11 -107.50 -2.16 -3.31 16 3 C -0.08 -1.18 6.11 -39.04 -0.24 -1.42 16 4 C -0.11 -1.35 9.10 -39.34 -0.36 -1.71 16 5 C -0.08 -0.96 6.22 -39.55 -0.25 -1.21 16 6 Br -0.06 -0.62 33.70 -68.01 -2.29 -2.91 16 7 C -0.10 -1.16 9.78 -39.51 -0.39 -1.55 16 8 C -0.08 -1.08 9.66 -39.62 -0.38 -1.47 16 9 C -0.03 -0.46 5.41 -104.40 -0.57 -1.02 16 10 C 0.09 1.57 5.22 -4.98 -0.03 1.55 16 11 N -0.68 -14.82 6.48 -116.34 -0.75 -15.57 16 12 C 0.19 5.11 5.44 -4.98 -0.03 5.08 16 13 C -0.51 -14.61 9.32 -34.44 -0.32 -14.93 16 14 H 0.06 1.76 7.81 -52.49 -0.41 1.35 16 15 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 16 N -0.90 -26.85 13.29 55.43 0.74 -26.12 16 17 Si 0.90 21.79 29.54 -169.99 -5.02 16.77 16 18 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 19 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 20 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 21 H 0.08 0.74 7.75 -51.93 -0.40 0.34 16 22 H 0.11 0.87 8.14 -51.92 -0.42 0.44 16 23 H 0.08 0.67 7.75 -51.93 -0.40 0.27 16 24 H 0.13 1.40 5.88 -52.49 -0.31 1.09 16 25 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 26 H 0.14 1.65 8.03 -52.48 -0.42 1.23 16 27 H 0.04 0.71 7.25 -51.93 -0.38 0.34 16 28 H 0.08 1.37 8.00 -51.93 -0.42 0.96 16 29 H 0.33 7.21 7.79 -39.29 -0.31 6.91 16 30 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 31 H -0.01 -0.31 8.14 -51.93 -0.42 -0.73 16 32 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 306.36 15.07 4.62 4.62 Total: -1.00 -30.19 306.36 -10.47 -40.66 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: -3.87 Total: 1.57 kcal Atomic # 6 Polarization: -13.99 SS G_CDS: -1.72 Total: -15.71 kcal Atomic # 7 Polarization: -41.67 SS G_CDS: -0.02 Total: -41.69 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Atomic # 16 Polarization: -1.15 SS G_CDS: -2.16 Total: -3.31 kcal Atomic # 35 Polarization: -0.62 SS G_CDS: -2.29 Total: -2.91 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -30.19 -10.47 -40.66 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336734166.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.928 kcal (2) G-P(sol) polarization free energy of solvation -30.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.657 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds