Wall clock time and date at job start Tue Mar 31 2020 10:43:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30667 * 1 3 3 Si 1.86798 * 119.99907 * 2 1 4 4 H 1.48504 * 109.47152 * 274.98694 * 3 2 1 5 5 H 1.48505 * 109.47298 * 34.98395 * 3 2 1 6 6 H 1.48501 * 109.47311 * 154.98756 * 3 2 1 7 7 C 1.40050 * 120.00139 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99717 * 186.15430 * 7 2 1 9 9 C 1.46368 * 119.99765 * 6.15773 * 7 2 1 10 10 O 1.21685 * 120.00295 * 353.94655 * 9 7 2 11 11 N 1.34777 * 119.99826 * 173.95226 * 9 7 2 12 12 C 1.46504 * 120.00095 * 180.02562 * 11 9 7 13 13 H 1.08997 * 109.43006 * 325.08696 * 12 11 9 14 14 C 1.53066 * 109.43296 * 205.21767 * 12 11 9 15 15 C 1.53402 * 108.30571 * 191.72763 * 14 12 11 16 16 O 1.42824 * 108.37525 * 64.69234 * 15 14 12 17 17 C 1.35875 * 117.78692 * 310.54300 * 16 15 14 18 18 C 1.39225 * 118.48369 * 196.84416 * 17 16 15 19 19 Cl 1.73594 * 119.90537 * 0.95032 * 18 17 16 20 20 C 1.38167 * 120.18481 * 180.66839 * 18 17 16 21 21 Cl 1.73602 * 120.04277 * 180.21405 * 20 18 17 22 22 C 1.38407 * 119.91754 * 0.24128 * 20 18 17 23 23 C 1.38072 * 119.97842 * 359.89431 * 22 20 18 24 24 C 1.38343 * 121.80540 * 17.84259 * 17 16 15 25 25 H 0.97003 * 120.00349 * 359.97438 * 1 2 3 26 26 H 0.97003 * 120.00019 * 359.97438 * 11 9 7 27 27 H 1.09000 * 109.69878 * 311.43078 * 14 12 11 28 28 H 1.08997 * 109.69556 * 71.98656 * 14 12 11 29 29 H 1.09012 * 109.68283 * 184.40690 * 15 14 12 30 30 H 1.08998 * 109.68867 * 304.96192 * 15 14 12 31 31 H 1.08004 * 120.01249 * 179.87705 * 22 20 18 32 32 H 1.08004 * 119.82318 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6177 0.0000 4 1 2.3827 2.1073 -1.3948 5 1 1.4947 2.6200 0.8027 6 1 3.5869 1.4121 0.5920 7 6 2.0070 -1.2128 0.0005 8 1 3.0823 -1.2154 0.1008 9 6 1.2814 -2.4768 -0.1349 10 8 0.0646 -2.4827 -0.1371 11 7 1.9611 -3.6342 -0.2570 12 6 1.2350 -4.8994 -0.3931 13 1 0.3222 -4.8592 0.2012 14 6 2.1157 -6.0481 0.1046 15 6 1.4640 -7.3717 -0.3155 16 8 1.4675 -7.4425 -1.7420 17 6 1.0030 -6.3672 -2.4307 18 6 0.6634 -6.5331 -3.7707 19 17 0.8150 -8.0940 -4.5151 20 6 0.2006 -5.4602 -4.5080 21 17 -0.2271 -5.6725 -6.1770 22 6 0.0788 -4.2158 -3.9144 23 6 0.4178 -4.0488 -2.5864 24 6 0.8811 -5.1214 -1.8418 25 1 -0.4851 0.8400 0.0004 26 1 2.9312 -3.6295 -0.2555 27 1 3.1078 -5.9697 -0.3400 28 1 2.1956 -6.0058 1.1908 29 1 2.0317 -8.2070 0.0948 30 1 0.4383 -7.4088 0.0515 31 1 -0.2809 -3.3756 -4.4898 32 1 0.3215 -3.0768 -2.1256 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000365174037.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:43:48 Heat of formation + Delta-G solvation = -66.037738 kcal Electronic energy + Delta-G solvation = -21695.144639 eV Core-core repulsion = 18093.449818 eV Total energy + Delta-G solvation = -3601.694821 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 315.022 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.74121 -37.80310 -37.67911 -36.31038 -36.10236 -34.49037 -32.57804 -31.10939 -30.22873 -29.85673 -26.63815 -24.71087 -23.64611 -22.33018 -20.29288 -19.79652 -17.88745 -17.40942 -16.72242 -16.35244 -15.48249 -15.35700 -14.86997 -14.51261 -14.27192 -14.18607 -13.95607 -13.57888 -12.72788 -12.64842 -12.33266 -12.27770 -11.87360 -11.64820 -11.41747 -11.24848 -11.11184 -10.99664 -10.84348 -10.69185 -10.63452 -10.59273 -10.42095 -10.25694 -8.98092 -8.43446 -8.09707 -7.83828 -7.76426 -6.34527 -4.79566 1.15418 1.37885 1.94094 2.35561 3.06109 3.14643 3.17224 3.29191 3.66899 4.00465 4.37442 4.52917 4.74977 4.82118 4.93231 5.14401 5.20574 5.30265 5.44204 5.51699 5.65014 5.67896 5.72198 5.92493 6.11450 6.24787 6.45885 6.71192 6.86695 7.30743 7.34754 7.71844 7.86509 8.16914 8.88498 9.30737 10.40608 10.58510 Molecular weight = 315.02amu Principal moments of inertia in cm(-1) A = 0.017115 B = 0.004421 C = 0.003689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.560137 B = 6332.481869 C = 7589.134792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.764 5.764 2 C 0.090 3.910 3 Si 0.907 3.093 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.544 4.544 8 H 0.069 0.931 9 C 0.553 3.447 10 O -0.575 6.575 11 N -0.756 5.756 12 C 0.197 3.803 13 H 0.095 0.905 14 C -0.166 4.166 15 C 0.065 3.935 16 O -0.305 6.305 17 C 0.150 3.850 18 C -0.075 4.075 19 Cl -0.053 7.053 20 C -0.003 4.003 21 Cl -0.058 7.058 22 C -0.137 4.137 23 C -0.040 4.040 24 C -0.148 4.148 25 H 0.270 0.730 26 H 0.384 0.616 27 H 0.080 0.920 28 H 0.091 0.909 29 H 0.111 0.889 30 H 0.068 0.932 31 H 0.140 0.860 32 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.986 -11.875 -4.701 13.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.392 5.392 2 C -0.131 4.131 3 Si 0.731 3.269 4 H -0.197 1.197 5 H -0.204 1.204 6 H -0.189 1.189 7 C -0.581 4.581 8 H 0.087 0.913 9 C 0.358 3.642 10 O -0.459 6.459 11 N -0.410 5.410 12 C 0.090 3.910 13 H 0.113 0.887 14 C -0.204 4.204 15 C -0.011 4.011 16 O -0.219 6.219 17 C 0.103 3.897 18 C -0.103 4.103 19 Cl -0.024 7.024 20 C -0.031 4.031 21 Cl -0.029 7.029 22 C -0.156 4.156 23 C -0.058 4.058 24 C -0.151 4.151 25 H 0.081 0.919 26 H 0.216 0.784 27 H 0.099 0.901 28 H 0.109 0.891 29 H 0.129 0.871 30 H 0.087 0.913 31 H 0.158 0.842 32 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 1.960 -12.094 -4.956 13.216 hybrid contribution 0.861 0.815 -0.124 1.192 sum 2.821 -11.278 -5.080 12.687 Atomic orbital electron populations 1.69998 1.07029 1.27569 1.34578 1.25681 0.94614 1.00315 0.92497 0.86364 0.80275 0.81403 0.78816 1.19700 1.20394 1.18860 1.20877 0.94240 0.89358 1.53599 0.91267 1.18269 0.87253 0.82319 0.76318 1.90617 1.13823 1.86094 1.55385 1.46273 1.08725 1.04830 1.81206 1.19282 0.96642 0.85615 0.89473 0.88697 1.22518 1.00312 0.94489 1.03066 1.23020 1.01693 0.98609 0.77752 1.86028 1.78962 1.36619 1.20269 1.18148 0.95434 0.86743 0.89389 1.19908 1.10754 0.87683 0.91945 1.98338 1.96693 1.25658 1.81680 1.20438 1.02712 0.93786 0.86116 1.98357 1.91529 1.97542 1.15430 1.21027 1.03687 0.95084 0.95849 1.21805 0.90867 1.01176 0.91950 1.20708 1.03802 0.91349 0.99237 0.91913 0.78358 0.90103 0.89081 0.87082 0.91348 0.84212 0.81487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -21.27 11.85 55.55 0.66 -20.61 16 2 C 0.09 2.32 5.49 -17.37 -0.10 2.23 16 3 Si 0.91 19.02 29.56 -169.99 -5.03 14.00 16 4 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 5 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 6 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 7 C -0.54 -14.13 9.53 -35.63 -0.34 -14.47 16 8 H 0.07 1.66 7.85 -52.49 -0.41 1.25 16 9 C 0.55 14.00 6.29 -12.99 -0.08 13.92 16 10 O -0.58 -16.48 12.98 5.20 0.07 -16.42 16 11 N -0.76 -15.03 4.85 -56.28 -0.27 -15.30 16 12 C 0.20 3.41 2.70 -69.01 -0.19 3.22 16 13 H 0.10 1.84 7.57 -51.93 -0.39 1.45 16 14 C -0.17 -2.09 5.68 -26.49 -0.15 -2.24 16 15 C 0.06 0.73 7.02 37.37 0.26 1.00 16 16 O -0.31 -4.43 9.65 -19.35 -0.19 -4.62 16 17 C 0.15 2.46 6.47 -39.18 -0.25 2.20 16 18 C -0.07 -1.21 6.34 -39.24 -0.25 -1.46 16 19 Cl -0.05 -0.76 27.40 -51.86 -1.42 -2.18 16 20 C 0.00 -0.05 6.32 -39.55 -0.25 -0.30 16 21 Cl -0.06 -0.81 27.95 -51.86 -1.45 -2.26 16 22 C -0.14 -2.33 9.83 -39.58 -0.39 -2.72 16 23 C -0.04 -0.77 9.08 -39.53 -0.36 -1.13 16 24 C -0.15 -2.63 5.56 -104.43 -0.58 -3.21 16 25 H 0.27 6.88 8.29 -40.82 -0.34 6.54 16 26 H 0.38 6.79 8.56 -40.82 -0.35 6.44 16 27 H 0.08 0.99 8.11 -51.93 -0.42 0.57 16 28 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 29 H 0.11 0.92 8.14 -51.92 -0.42 0.49 16 30 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.14 2.15 8.06 -52.48 -0.42 1.73 16 32 H 0.17 3.86 4.70 -52.48 -0.25 3.61 16 LS Contribution 303.44 15.07 4.57 4.57 Total: -1.00 -29.98 303.44 -8.38 -38.36 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: -2.65 Total: 7.41 kcal Atomic # 6 Polarization: -0.28 SS G_CDS: -2.67 Total: -2.95 kcal Atomic # 7 Polarization: -36.30 SS G_CDS: 0.39 Total: -35.92 kcal Atomic # 8 Polarization: -20.91 SS G_CDS: -0.12 Total: -21.03 kcal Atomic # 14 Polarization: 19.02 SS G_CDS: -5.03 Total: 14.00 kcal Atomic # 17 Polarization: -1.57 SS G_CDS: -2.87 Total: -4.44 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -29.98 -8.38 -38.36 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000365174037.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.678 kcal (2) G-P(sol) polarization free energy of solvation -29.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds