Wall clock time and date at job start Tue Mar 31 2020 10:43:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30667 * 1 3 3 Si 1.86798 * 119.99907 * 2 1 4 4 H 1.48504 * 109.47152 * 274.98694 * 3 2 1 5 5 H 1.48505 * 109.47298 * 34.98395 * 3 2 1 6 6 H 1.48501 * 109.47311 * 154.98756 * 3 2 1 7 7 C 1.40050 * 120.00139 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99717 * 186.15430 * 7 2 1 9 9 C 1.46368 * 119.99765 * 6.15773 * 7 2 1 10 10 O 1.21685 * 120.00295 * 353.94655 * 9 7 2 11 11 N 1.34777 * 119.99826 * 173.95226 * 9 7 2 12 12 C 1.46504 * 120.00095 * 180.02562 * 11 9 7 13 13 H 1.08997 * 109.43006 * 325.08696 * 12 11 9 14 14 C 1.53066 * 109.43296 * 205.21767 * 12 11 9 15 15 C 1.53402 * 108.30571 * 191.72763 * 14 12 11 16 16 O 1.42824 * 108.37525 * 64.69234 * 15 14 12 17 17 C 1.35875 * 117.78692 * 310.54300 * 16 15 14 18 18 C 1.39225 * 118.48369 * 196.84416 * 17 16 15 19 19 Cl 1.73594 * 119.90537 * 0.95032 * 18 17 16 20 20 C 1.38167 * 120.18481 * 180.66839 * 18 17 16 21 21 Cl 1.73602 * 120.04277 * 180.21405 * 20 18 17 22 22 C 1.38407 * 119.91754 * 0.24128 * 20 18 17 23 23 C 1.38072 * 119.97842 * 359.89431 * 22 20 18 24 24 C 1.38343 * 121.80540 * 17.84259 * 17 16 15 25 25 H 0.97003 * 120.00349 * 359.97438 * 1 2 3 26 26 H 0.97003 * 120.00019 * 359.97438 * 11 9 7 27 27 H 1.09000 * 109.69878 * 311.43078 * 14 12 11 28 28 H 1.08997 * 109.69556 * 71.98656 * 14 12 11 29 29 H 1.09012 * 109.68283 * 184.40690 * 15 14 12 30 30 H 1.08998 * 109.68867 * 304.96192 * 15 14 12 31 31 H 1.08004 * 120.01249 * 179.87705 * 22 20 18 32 32 H 1.08004 * 119.82318 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6177 0.0000 4 1 2.3827 2.1073 -1.3948 5 1 1.4947 2.6200 0.8027 6 1 3.5869 1.4121 0.5920 7 6 2.0070 -1.2128 0.0005 8 1 3.0823 -1.2154 0.1008 9 6 1.2814 -2.4768 -0.1349 10 8 0.0646 -2.4827 -0.1371 11 7 1.9611 -3.6342 -0.2570 12 6 1.2350 -4.8994 -0.3931 13 1 0.3222 -4.8592 0.2012 14 6 2.1157 -6.0481 0.1046 15 6 1.4640 -7.3717 -0.3155 16 8 1.4675 -7.4425 -1.7420 17 6 1.0030 -6.3672 -2.4307 18 6 0.6634 -6.5331 -3.7707 19 17 0.8150 -8.0940 -4.5151 20 6 0.2006 -5.4602 -4.5080 21 17 -0.2271 -5.6725 -6.1770 22 6 0.0788 -4.2158 -3.9144 23 6 0.4178 -4.0488 -2.5864 24 6 0.8811 -5.1214 -1.8418 25 1 -0.4851 0.8400 0.0004 26 1 2.9312 -3.6295 -0.2555 27 1 3.1078 -5.9697 -0.3400 28 1 2.1956 -6.0058 1.1908 29 1 2.0317 -8.2070 0.0948 30 1 0.4383 -7.4088 0.0515 31 1 -0.2809 -3.3756 -4.4898 32 1 0.3215 -3.0768 -2.1256 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000365174037.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:43:48 Heat of formation + Delta-G solvation = -85.163922 kcal Electronic energy + Delta-G solvation = -21695.974013 eV Core-core repulsion = 18093.449818 eV Total energy + Delta-G solvation = -3602.524195 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 315.022 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.01345 -39.43446 -39.01683 -37.53963 -37.39323 -36.04678 -34.54339 -32.57131 -31.56774 -31.16995 -28.49559 -26.05994 -24.90490 -23.71119 -21.90061 -21.25496 -19.34837 -18.98063 -18.03152 -17.61217 -17.37504 -16.67606 -16.25920 -15.97805 -15.80204 -15.66115 -15.16896 -14.83859 -14.37494 -14.06352 -13.92929 -13.53861 -13.24478 -13.11263 -12.87321 -12.78702 -12.60177 -12.45742 -12.24932 -12.09715 -12.02278 -11.90064 -11.75019 -11.62035 -10.91824 -9.89865 -9.72726 -9.53467 -9.35148 -8.29155 -6.83380 -0.19736 0.04574 0.69671 1.07916 1.40967 1.42225 1.56774 2.12286 2.24696 2.34679 2.47371 3.06515 3.44046 3.60263 3.67456 3.77484 3.92367 4.09118 4.13024 4.21834 4.31123 4.53316 4.62909 4.72770 4.86750 5.02941 5.09107 5.33657 5.36096 5.40487 5.89195 6.14761 6.18883 6.26310 6.89423 7.52180 8.48702 8.66702 Molecular weight = 315.02amu Principal moments of inertia in cm(-1) A = 0.017115 B = 0.004421 C = 0.003689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.560137 B = 6332.481869 C = 7589.134792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.815 5.815 2 C 0.037 3.963 3 Si 0.988 3.012 4 H -0.266 1.266 5 H -0.275 1.275 6 H -0.250 1.250 7 C -0.573 4.573 8 H 0.084 0.916 9 C 0.546 3.454 10 O -0.617 6.617 11 N -0.744 5.744 12 C 0.194 3.806 13 H 0.067 0.933 14 C -0.154 4.154 15 C 0.061 3.939 16 O -0.305 6.305 17 C 0.159 3.841 18 C -0.080 4.080 19 Cl -0.033 7.033 20 C -0.001 4.001 21 Cl -0.036 7.036 22 C -0.140 4.140 23 C -0.063 4.063 24 C -0.158 4.158 25 H 0.274 0.726 26 H 0.396 0.604 27 H 0.090 0.910 28 H 0.111 0.889 29 H 0.155 0.845 30 H 0.073 0.927 31 H 0.148 0.852 32 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.775 -13.308 -4.996 14.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C -0.179 4.179 3 Si 0.808 3.192 4 H -0.191 1.191 5 H -0.200 1.200 6 H -0.174 1.174 7 C -0.609 4.609 8 H 0.102 0.898 9 C 0.351 3.649 10 O -0.504 6.504 11 N -0.397 5.397 12 C 0.088 3.912 13 H 0.085 0.915 14 C -0.192 4.192 15 C -0.013 4.013 16 O -0.219 6.219 17 C 0.111 3.889 18 C -0.108 4.108 19 Cl -0.004 7.004 20 C -0.028 4.028 21 Cl -0.007 7.007 22 C -0.159 4.159 23 C -0.082 4.082 24 C -0.161 4.161 25 H 0.084 0.916 26 H 0.230 0.770 27 H 0.109 0.891 28 H 0.129 0.871 29 H 0.173 0.827 30 H 0.091 0.909 31 H 0.166 0.834 32 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 3.790 -13.577 -5.250 15.042 hybrid contribution 0.284 1.112 -0.078 1.151 sum 4.074 -12.465 -5.327 14.155 Atomic orbital electron populations 1.70149 1.09196 1.28853 1.36206 1.26777 0.95383 1.04410 0.91317 0.85144 0.79083 0.75956 0.79024 1.19093 1.19950 1.17371 1.21393 0.95155 0.90316 1.54055 0.89778 1.18424 0.86840 0.83812 0.75819 1.90578 1.15662 1.87102 1.57029 1.45900 1.09215 1.04761 1.79867 1.19425 0.96443 0.86021 0.89334 0.91525 1.22485 0.99560 0.92919 1.04238 1.23382 1.02768 0.99162 0.75980 1.86045 1.78325 1.35508 1.21974 1.18067 0.94626 0.86545 0.89657 1.20058 1.10156 0.88520 0.92076 1.98342 1.96555 1.24243 1.81307 1.20429 1.02018 0.93268 0.87136 1.98363 1.91288 1.97431 1.13644 1.21027 1.03650 0.96083 0.95101 1.21487 0.93322 1.00074 0.93278 1.20652 1.04412 0.91786 0.99241 0.91614 0.76953 0.89141 0.87092 0.82742 0.90872 0.83416 0.85619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -47.26 11.85 21.84 0.26 -47.00 16 2 C 0.04 1.97 5.49 85.31 0.47 2.43 16 3 Si 0.99 39.33 29.56 68.60 2.03 41.36 16 4 H -0.27 -10.27 7.11 99.48 0.71 -9.56 16 5 H -0.27 -10.64 7.11 99.48 0.71 -9.93 16 6 H -0.25 -9.30 7.11 99.48 0.71 -8.59 16 7 C -0.57 -30.43 9.53 24.83 0.24 -30.20 16 8 H 0.08 4.05 7.85 -2.91 -0.02 4.03 16 9 C 0.55 28.85 6.29 86.36 0.54 29.39 16 10 O -0.62 -37.46 12.98 -4.30 -0.06 -37.52 16 11 N -0.74 -30.22 4.85 -450.18 -2.18 -32.41 16 12 C 0.19 6.79 2.70 44.29 0.12 6.91 16 13 H 0.07 2.71 7.57 -2.39 -0.02 2.69 16 14 C -0.15 -3.55 5.68 30.75 0.17 -3.37 16 15 C 0.06 1.20 7.02 72.12 0.51 1.70 16 16 O -0.30 -8.04 9.65 -92.15 -0.89 -8.93 16 17 C 0.16 5.02 6.47 22.53 0.15 5.16 16 18 C -0.08 -2.47 6.34 22.49 0.14 -2.33 16 19 Cl -0.03 -0.90 27.40 -2.72 -0.07 -0.97 16 20 C 0.00 -0.02 6.32 22.29 0.14 0.12 16 21 Cl -0.04 -0.97 27.95 -2.72 -0.08 -1.05 16 22 C -0.14 -4.85 9.83 22.27 0.22 -4.63 16 23 C -0.06 -2.55 9.08 22.30 0.20 -2.35 16 24 C -0.16 -5.70 5.56 -19.74 -0.11 -5.81 16 25 H 0.27 14.51 8.29 -92.71 -0.77 13.74 16 26 H 0.40 13.97 8.56 -92.71 -0.79 13.17 16 27 H 0.09 1.96 8.11 -2.39 -0.02 1.94 16 28 H 0.11 2.14 8.14 -2.39 -0.02 2.13 16 29 H 0.16 1.77 8.14 -2.38 -0.02 1.75 16 30 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.15 4.71 8.06 -2.91 -0.02 4.69 16 32 H 0.13 6.27 4.70 -2.91 -0.01 6.25 16 Total: -1.00 -67.98 303.44 2.20 -65.78 By element: Atomic # 1 Polarization: 23.28 SS G_CDS: 0.40 Total: 23.68 kcal Atomic # 6 Polarization: -5.74 SS G_CDS: 2.79 Total: -2.95 kcal Atomic # 7 Polarization: -77.49 SS G_CDS: -1.93 Total: -79.41 kcal Atomic # 8 Polarization: -45.50 SS G_CDS: -0.94 Total: -46.45 kcal Atomic # 14 Polarization: 39.33 SS G_CDS: 2.03 Total: 41.36 kcal Atomic # 17 Polarization: -1.87 SS G_CDS: -0.15 Total: -2.02 kcal Total: -67.98 2.20 -65.78 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000365174037.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.384 kcal (2) G-P(sol) polarization free energy of solvation -67.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds