Wall clock time and date at job start Tue Mar 31 2020 11:04:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46494 * 109.47381 * 2 1 4 4 C 1.46504 * 120.00019 * 274.27455 * 3 2 1 5 5 C 1.50707 * 109.47076 * 273.85597 * 4 3 2 6 6 H 1.08011 * 119.99569 * 0.02562 * 5 4 3 7 7 C 1.37875 * 120.00380 * 179.97438 * 5 4 3 8 8 N 1.31516 * 119.99439 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00154 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47184 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.46943 * 120.00262 * 9 7 5 12 12 H 1.48492 * 109.47507 * 240.00155 * 9 7 5 13 13 C 1.34776 * 120.00562 * 94.26961 * 3 2 1 14 14 O 1.21621 * 119.99441 * 3.93952 * 13 3 2 15 15 C 1.47376 * 120.00381 * 183.93619 * 13 3 2 16 16 C 1.47034 * 127.18911 * 318.32313 * 15 13 3 17 17 C 1.34282 * 105.94595 * 179.97438 * 16 15 13 18 18 Br 1.89099 * 125.45086 * 179.97438 * 17 16 15 19 19 O 1.34220 * 109.10478 * 359.97438 * 17 16 15 20 20 C 1.33699 * 110.90846 * 359.97438 * 19 17 16 21 21 C 1.50698 * 125.79296 * 179.97438 * 20 19 17 22 22 H 1.08992 * 109.46946 * 300.00142 * 1 2 3 23 23 H 1.09000 * 109.46659 * 60.00450 * 1 2 3 24 24 H 1.08997 * 109.46944 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47052 * 239.99317 * 2 1 3 26 26 H 1.09004 * 109.47098 * 119.99763 * 2 1 3 27 27 H 1.08999 * 109.47308 * 33.84843 * 4 3 2 28 28 H 1.08994 * 109.47525 * 153.85876 * 4 3 2 29 29 H 0.97006 * 119.99666 * 179.97438 * 8 7 5 30 30 H 1.08005 * 127.02653 * 0.23564 * 16 15 13 31 31 H 1.09003 * 109.46981 * 359.97438 * 21 20 19 32 32 H 1.08994 * 109.47289 * 119.97692 * 21 20 19 33 33 H 1.09002 * 109.47445 * 239.98360 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1735 2.1033 -1.2652 5 6 3.5285 1.8028 -1.8524 6 1 4.2062 1.1397 -1.3349 7 6 3.9027 2.3733 -3.0505 8 7 3.0772 3.1802 -3.6807 9 14 5.5826 2.0013 -3.7778 10 1 6.3157 1.0723 -2.8807 11 1 5.4157 1.3716 -5.1123 12 1 6.3515 3.2638 -3.9189 13 6 2.3250 1.9876 1.1639 14 8 2.2649 1.3661 2.2076 15 6 2.7332 3.4037 1.1719 16 6 3.6335 4.0745 0.2225 17 6 3.7080 5.3533 0.6253 18 35 4.7260 6.7093 -0.2118 19 8 2.9443 5.5151 1.7171 20 6 2.3530 4.3662 2.0604 21 6 1.4256 4.1678 3.2315 22 1 -0.3633 0.5138 0.8899 23 1 -0.3632 0.5138 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 1.8934 -0.5139 -0.8899 26 1 1.8934 -0.5138 0.8900 27 1 1.3974 1.7864 -1.9619 28 1 2.0850 3.1746 -1.0854 29 1 3.3406 3.5819 -4.5234 30 1 4.1299 3.6304 -0.6278 31 1 1.3068 5.1110 3.7647 32 1 0.4541 3.8286 2.8723 33 1 1.8453 3.4203 3.9048 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396639682.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:57 Heat of formation + Delta-G solvation = -19.884097 kcal Electronic energy + Delta-G solvation = -19091.425534 eV Core-core repulsion = 15972.428329 eV Total energy + Delta-G solvation = -3118.997205 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 315.026 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -42.17909 -38.87627 -35.27476 -33.15061 -32.52526 -32.33245 -30.64957 -30.00818 -27.23245 -26.01837 -23.63570 -23.10840 -21.65160 -20.20594 -18.10815 -16.91363 -16.51696 -16.13009 -15.61037 -15.40197 -14.49431 -14.18670 -13.80165 -13.20561 -13.13391 -12.87822 -12.64539 -12.60282 -12.35384 -11.94015 -11.63097 -11.56293 -11.24930 -10.97605 -10.96440 -10.79425 -10.50130 -10.31852 -10.15589 -9.77975 -9.33364 -9.08070 -8.57854 -8.09007 -7.73543 -6.22714 -4.30645 1.21096 1.75697 2.47866 3.19037 3.28696 3.32466 3.50183 3.66458 3.99372 4.30746 5.04160 5.08660 5.27161 5.49132 5.59900 5.64235 5.68753 5.80182 5.87097 5.92995 6.08241 6.25608 6.34163 6.43372 6.62555 6.76608 6.91190 7.20104 7.25700 7.53476 7.71708 8.01956 8.29440 8.75126 8.96141 9.36094 10.82897 Molecular weight = 315.03amu Principal moments of inertia in cm(-1) A = 0.010520 B = 0.008267 C = 0.004986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2660.846581 B = 3386.241916 C = 5614.712814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.114 3.886 3 N -0.585 5.585 4 C 0.231 3.769 5 C -0.541 4.541 6 H 0.063 0.937 7 C 0.068 3.932 8 N -0.882 5.882 9 Si 0.888 3.112 10 H -0.270 1.270 11 H -0.282 1.282 12 H -0.279 1.279 13 C 0.589 3.411 14 O -0.571 6.571 15 C -0.217 4.217 16 C -0.087 4.087 17 C -0.058 4.058 18 Br 0.041 6.959 19 O -0.170 6.170 20 C 0.061 3.939 21 C -0.071 4.071 22 H 0.051 0.949 23 H 0.056 0.944 24 H 0.058 0.942 25 H 0.078 0.922 26 H 0.075 0.925 27 H 0.034 0.966 28 H 0.046 0.954 29 H 0.266 0.734 30 H 0.196 0.804 31 H 0.075 0.925 32 H 0.087 0.913 33 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.108 5.253 7.177 8.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.009 4.009 3 N -0.314 5.314 4 C 0.111 3.889 5 C -0.579 4.579 6 H 0.081 0.919 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.715 3.285 10 H -0.195 1.195 11 H -0.207 1.207 12 H -0.205 1.205 13 C 0.377 3.623 14 O -0.453 6.453 15 C -0.222 4.222 16 C -0.108 4.108 17 C -0.183 4.183 18 Br 0.124 6.876 19 O -0.068 6.068 20 C 0.007 3.993 21 C -0.127 4.127 22 H 0.070 0.930 23 H 0.075 0.925 24 H 0.077 0.923 25 H 0.097 0.903 26 H 0.093 0.907 27 H 0.053 0.947 28 H 0.064 0.936 29 H 0.076 0.924 30 H 0.212 0.788 31 H 0.094 0.906 32 H 0.106 0.894 33 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -0.822 5.813 7.327 9.389 hybrid contribution 0.770 -0.401 -0.768 1.159 sum -0.051 5.411 6.559 8.504 Atomic orbital electron populations 1.22108 0.96777 1.01292 1.01929 1.21267 0.93403 0.83496 1.02779 1.48097 1.61940 1.13526 1.07876 1.19610 0.97230 0.92942 0.79068 1.21518 1.00897 1.29360 1.06150 0.91875 1.24932 0.97443 0.94763 0.96442 1.69937 1.35596 1.29885 1.16506 0.86576 0.84015 0.78594 0.79295 1.19486 1.20747 1.20483 1.17161 0.76688 0.84796 0.83623 1.90676 1.56372 1.65947 1.32352 1.21181 1.06270 0.95603 0.99168 1.23794 0.97420 0.90184 0.99448 1.23444 1.05199 0.95552 0.94145 1.96752 1.66106 1.49504 1.75214 1.83677 1.49736 1.34593 1.38827 1.22653 0.96762 0.82553 0.97373 1.20406 0.96487 1.03276 0.92531 0.93005 0.92453 0.92294 0.90344 0.90707 0.94749 0.93591 0.92420 0.78750 0.90575 0.89414 0.88386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.53 10.24 37.16 0.38 -2.15 16 2 C 0.11 2.09 6.22 -4.04 -0.03 2.06 16 3 N -0.59 -12.48 2.46 -176.34 -0.43 -12.91 16 4 C 0.23 5.45 4.72 -5.19 -0.02 5.42 16 5 C -0.54 -13.57 7.16 -34.44 -0.25 -13.82 16 6 H 0.06 1.63 7.81 -52.48 -0.41 1.22 16 7 C 0.07 1.74 5.36 -17.82 -0.10 1.64 16 8 N -0.88 -23.40 13.29 55.43 0.74 -22.66 16 9 Si 0.89 19.96 29.54 -169.99 -5.02 14.94 16 10 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 11 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 12 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 13 C 0.59 12.73 7.42 -12.54 -0.09 12.63 16 14 O -0.57 -12.81 16.11 5.26 0.08 -12.73 16 15 C -0.22 -4.46 5.33 -103.28 -0.55 -5.01 16 16 C -0.09 -1.83 8.67 -37.41 -0.32 -2.15 16 17 C -0.06 -1.10 7.76 29.34 0.23 -0.87 16 18 Br 0.04 0.66 34.08 -68.01 -2.32 -1.66 16 19 O -0.17 -3.07 10.53 7.52 0.08 -2.99 16 20 C 0.06 1.08 7.37 -34.97 -0.26 0.82 16 21 C -0.07 -0.94 9.84 36.00 0.35 -0.59 16 22 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 23 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 24 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.08 1.42 8.10 -51.93 -0.42 1.00 16 26 H 0.07 1.37 7.25 -51.93 -0.38 0.99 16 27 H 0.03 0.85 8.10 -51.93 -0.42 0.43 16 28 H 0.05 1.14 5.39 -51.93 -0.28 0.86 16 29 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 30 H 0.20 4.49 5.42 -52.48 -0.28 4.21 16 31 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.10 1.31 8.06 -51.93 -0.42 0.90 16 LS Contribution 306.56 15.07 4.62 4.62 Total: -1.00 -27.77 306.56 -6.77 -34.53 By element: Atomic # 1 Polarization: 4.74 SS G_CDS: -3.86 Total: 0.88 kcal Atomic # 6 Polarization: -1.36 SS G_CDS: -0.65 Total: -2.02 kcal Atomic # 7 Polarization: -35.88 SS G_CDS: 0.30 Total: -35.57 kcal Atomic # 8 Polarization: -15.88 SS G_CDS: 0.16 Total: -15.72 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -5.02 Total: 14.94 kcal Atomic # 35 Polarization: 0.66 SS G_CDS: -2.32 Total: -1.66 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -27.77 -6.77 -34.53 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396639682.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.649 kcal (2) G-P(sol) polarization free energy of solvation -27.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds