Wall clock time and date at job start Tue Mar 31 2020 11:04:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46494 * 109.47381 * 2 1 4 4 C 1.46504 * 120.00019 * 274.27455 * 3 2 1 5 5 C 1.50707 * 109.47076 * 273.85597 * 4 3 2 6 6 H 1.08011 * 119.99569 * 0.02562 * 5 4 3 7 7 C 1.37875 * 120.00380 * 179.97438 * 5 4 3 8 8 N 1.31516 * 119.99439 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00154 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47184 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.46943 * 120.00262 * 9 7 5 12 12 H 1.48492 * 109.47507 * 240.00155 * 9 7 5 13 13 C 1.34776 * 120.00562 * 94.26961 * 3 2 1 14 14 O 1.21621 * 119.99441 * 3.93952 * 13 3 2 15 15 C 1.47376 * 120.00381 * 183.93619 * 13 3 2 16 16 C 1.47034 * 127.18911 * 318.32313 * 15 13 3 17 17 C 1.34282 * 105.94595 * 179.97438 * 16 15 13 18 18 Br 1.89099 * 125.45086 * 179.97438 * 17 16 15 19 19 O 1.34220 * 109.10478 * 359.97438 * 17 16 15 20 20 C 1.33699 * 110.90846 * 359.97438 * 19 17 16 21 21 C 1.50698 * 125.79296 * 179.97438 * 20 19 17 22 22 H 1.08992 * 109.46946 * 300.00142 * 1 2 3 23 23 H 1.09000 * 109.46659 * 60.00450 * 1 2 3 24 24 H 1.08997 * 109.46944 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47052 * 239.99317 * 2 1 3 26 26 H 1.09004 * 109.47098 * 119.99763 * 2 1 3 27 27 H 1.08999 * 109.47308 * 33.84843 * 4 3 2 28 28 H 1.08994 * 109.47525 * 153.85876 * 4 3 2 29 29 H 0.97006 * 119.99666 * 179.97438 * 8 7 5 30 30 H 1.08005 * 127.02653 * 0.23564 * 16 15 13 31 31 H 1.09003 * 109.46981 * 359.97438 * 21 20 19 32 32 H 1.08994 * 109.47289 * 119.97692 * 21 20 19 33 33 H 1.09002 * 109.47445 * 239.98360 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1735 2.1033 -1.2652 5 6 3.5285 1.8028 -1.8524 6 1 4.2062 1.1397 -1.3349 7 6 3.9027 2.3733 -3.0505 8 7 3.0772 3.1802 -3.6807 9 14 5.5826 2.0013 -3.7778 10 1 6.3157 1.0723 -2.8807 11 1 5.4157 1.3716 -5.1123 12 1 6.3515 3.2638 -3.9189 13 6 2.3250 1.9876 1.1639 14 8 2.2649 1.3661 2.2076 15 6 2.7332 3.4037 1.1719 16 6 3.6335 4.0745 0.2225 17 6 3.7080 5.3533 0.6253 18 35 4.7260 6.7093 -0.2118 19 8 2.9443 5.5151 1.7171 20 6 2.3530 4.3662 2.0604 21 6 1.4256 4.1678 3.2315 22 1 -0.3633 0.5138 0.8899 23 1 -0.3632 0.5138 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 1.8934 -0.5139 -0.8899 26 1 1.8934 -0.5138 0.8900 27 1 1.3974 1.7864 -1.9619 28 1 2.0850 3.1746 -1.0854 29 1 3.3406 3.5819 -4.5234 30 1 4.1299 3.6304 -0.6278 31 1 1.3068 5.1110 3.7647 32 1 0.4541 3.8286 2.8723 33 1 1.8453 3.4203 3.9048 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396639682.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:56 Heat of formation + Delta-G solvation = -34.670850 kcal Electronic energy + Delta-G solvation = -19092.066736 eV Core-core repulsion = 15972.428329 eV Total energy + Delta-G solvation = -3119.638407 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 315.026 amu Computer time = 2.70 seconds Orbital eigenvalues (eV) -43.65628 -40.54338 -36.99315 -34.87240 -34.19520 -33.71959 -32.04651 -31.46335 -29.09425 -27.40900 -25.10145 -24.98700 -23.17781 -21.72051 -19.68853 -18.66289 -18.31755 -17.64492 -17.18811 -17.00242 -16.31313 -15.81943 -15.29373 -14.65792 -14.48137 -14.35476 -14.21073 -13.99345 -13.88224 -13.43426 -13.13021 -13.08251 -12.83355 -12.68634 -12.61692 -12.31672 -12.15849 -11.82276 -11.68921 -11.65101 -11.00229 -10.75576 -10.47490 -9.59559 -9.41221 -8.19377 -6.33160 -0.22793 0.29931 0.88413 1.39312 1.44227 1.53164 2.02377 2.08180 2.32762 2.49405 3.10060 3.66713 3.72692 4.07607 4.22764 4.39320 4.43267 4.55673 4.59683 4.60244 4.69295 4.82800 4.98924 5.06283 5.11636 5.19342 5.28697 5.34226 5.66235 5.77152 5.85786 6.06560 6.52209 6.80279 7.24249 7.38606 8.85785 Molecular weight = 315.03amu Principal moments of inertia in cm(-1) A = 0.010520 B = 0.008267 C = 0.004986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2660.846581 B = 3386.241916 C = 5614.712814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.107 3.893 3 N -0.590 5.590 4 C 0.250 3.750 5 C -0.543 4.543 6 H 0.050 0.950 7 C 0.033 3.967 8 N -0.908 5.908 9 Si 0.941 3.059 10 H -0.272 1.272 11 H -0.278 1.278 12 H -0.274 1.274 13 C 0.587 3.413 14 O -0.583 6.583 15 C -0.255 4.255 16 C -0.109 4.109 17 C -0.059 4.059 18 Br 0.067 6.933 19 O -0.162 6.162 20 C 0.081 3.919 21 C -0.070 4.070 22 H 0.048 0.952 23 H 0.049 0.951 24 H 0.090 0.910 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.019 0.981 28 H 0.033 0.967 29 H 0.269 0.731 30 H 0.171 0.829 31 H 0.110 0.890 32 H 0.098 0.902 33 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.280 5.638 7.946 9.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.015 4.015 3 N -0.319 5.319 4 C 0.129 3.871 5 C -0.581 4.581 6 H 0.069 0.931 7 C -0.168 4.168 8 N -0.546 5.546 9 Si 0.767 3.233 10 H -0.196 1.196 11 H -0.203 1.203 12 H -0.199 1.199 13 C 0.377 3.623 14 O -0.467 6.467 15 C -0.260 4.260 16 C -0.131 4.131 17 C -0.184 4.184 18 Br 0.150 6.850 19 O -0.060 6.060 20 C 0.026 3.974 21 C -0.126 4.126 22 H 0.067 0.933 23 H 0.068 0.932 24 H 0.109 0.891 25 H 0.095 0.905 26 H 0.093 0.907 27 H 0.037 0.963 28 H 0.050 0.950 29 H 0.078 0.922 30 H 0.188 0.812 31 H 0.128 0.872 32 H 0.116 0.884 33 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -0.999 6.186 8.101 10.241 hybrid contribution 0.830 -0.497 -0.976 1.374 sum -0.170 5.689 7.125 9.119 Atomic orbital electron populations 1.22012 0.94375 1.03211 1.01363 1.21472 0.95394 0.81996 1.02664 1.48140 1.62150 1.14511 1.07140 1.19217 0.95985 0.92325 0.79574 1.21560 1.01303 1.28992 1.06257 0.93125 1.25495 1.00134 0.94524 0.96688 1.70011 1.37031 1.30671 1.16909 0.85750 0.80606 0.78456 0.78509 1.19637 1.20319 1.19930 1.17318 0.76341 0.85293 0.83390 1.90649 1.57153 1.66416 1.32490 1.21238 1.08098 0.95808 1.00833 1.23511 0.98650 0.91383 0.99572 1.23631 1.04944 0.95746 0.94072 1.96763 1.65391 1.47918 1.74883 1.83722 1.49364 1.34618 1.38310 1.23408 0.95410 0.81501 0.97081 1.20638 0.95640 1.05266 0.91040 0.93283 0.93174 0.89144 0.90532 0.90669 0.96296 0.94955 0.92220 0.81165 0.87168 0.88377 0.88099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.54 10.24 71.98 0.74 -3.80 16 2 C 0.11 3.90 6.22 86.38 0.54 4.44 16 3 N -0.59 -25.47 2.46 -830.07 -2.04 -27.51 16 4 C 0.25 12.04 4.72 85.63 0.40 12.44 16 5 C -0.54 -27.74 7.16 25.60 0.18 -27.56 16 6 H 0.05 2.67 7.81 -2.91 -0.02 2.65 16 7 C 0.03 1.71 5.36 84.65 0.45 2.16 16 8 N -0.91 -48.55 13.29 21.45 0.28 -48.27 16 9 Si 0.94 40.96 29.54 68.60 2.03 42.99 16 10 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 11 H -0.28 -11.86 7.11 99.48 0.71 -11.16 16 12 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 13 C 0.59 25.47 7.42 86.65 0.64 26.11 16 14 O -0.58 -25.95 16.11 -4.10 -0.07 -26.02 16 15 C -0.25 -10.46 5.33 -18.99 -0.10 -10.56 16 16 C -0.11 -4.65 8.67 23.67 0.21 -4.45 16 17 C -0.06 -2.19 7.76 66.92 0.52 -1.67 16 18 Br 0.07 2.10 34.08 -20.37 -0.69 1.40 16 19 O -0.16 -5.61 10.53 3.99 0.04 -5.57 16 20 C 0.08 2.75 7.37 25.26 0.19 2.94 16 21 C -0.07 -1.68 9.84 71.24 0.70 -0.98 16 22 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 23 H 0.05 1.56 8.14 -2.39 -0.02 1.55 16 24 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 25 H 0.08 2.78 8.10 -2.39 -0.02 2.76 16 26 H 0.07 2.72 7.25 -2.39 -0.02 2.71 16 27 H 0.02 0.96 8.10 -2.39 -0.02 0.94 16 28 H 0.03 1.66 5.39 -2.39 -0.01 1.65 16 29 H 0.27 13.63 8.31 -92.70 -0.77 12.86 16 30 H 0.17 8.12 5.42 -2.91 -0.02 8.10 16 31 H 0.11 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 33 H 0.10 2.46 8.06 -2.39 -0.02 2.44 16 Total: -1.00 -58.90 306.56 5.15 -53.75 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: 1.13 Total: 10.16 kcal Atomic # 6 Polarization: -5.40 SS G_CDS: 4.47 Total: -0.94 kcal Atomic # 7 Polarization: -74.02 SS G_CDS: -1.75 Total: -75.78 kcal Atomic # 8 Polarization: -31.56 SS G_CDS: -0.02 Total: -31.59 kcal Atomic # 14 Polarization: 40.96 SS G_CDS: 2.03 Total: 42.99 kcal Atomic # 35 Polarization: 2.10 SS G_CDS: -0.69 Total: 1.40 kcal Total: -58.90 5.15 -53.75 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396639682.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.079 kcal (2) G-P(sol) polarization free energy of solvation -58.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.70 seconds