Wall clock time and date at job start Tue Mar 31 2020 10:59:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.09001 * 109.47326 * 54.99931 * 3 2 1 5 5 C 1.50699 * 109.47053 * 175.00035 * 3 2 1 6 6 H 1.08004 * 120.00307 * 119.99902 * 5 3 2 7 7 C 1.37884 * 119.99822 * 299.99692 * 5 3 2 8 8 N 1.31514 * 120.00109 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99874 * 180.02562 * 7 5 3 10 10 H 1.48508 * 109.47158 * 89.99755 * 9 7 5 11 11 H 1.48494 * 109.47116 * 210.00006 * 9 7 5 12 12 H 1.48500 * 109.46922 * 330.00127 * 9 7 5 13 13 N 1.46499 * 109.46679 * 294.99474 * 3 2 1 14 14 C 1.34785 * 119.99572 * 85.00499 * 13 3 2 15 15 O 1.21605 * 120.00197 * 359.97438 * 14 13 3 16 16 C 1.47377 * 119.99779 * 179.97438 * 14 13 3 17 17 C 1.47039 * 127.18685 * 0.02562 * 16 14 13 18 18 C 1.34288 * 105.94262 * 179.97438 * 17 16 14 19 19 Br 1.89098 * 125.44757 * 180.02562 * 18 17 16 20 20 O 1.34215 * 109.10522 * 0.02562 * 18 17 16 21 21 C 1.33697 * 110.90981 * 359.76400 * 20 18 17 22 22 C 1.50704 * 125.79187 * 180.28725 * 21 20 18 23 23 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 25 25 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 26 26 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 27 27 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 28 28 H 0.96997 * 119.99669 * 180.02562 * 8 7 5 29 29 H 0.96999 * 120.00274 * 264.99733 * 13 3 2 30 30 H 1.07993 * 127.02835 * 359.93451 * 17 16 14 31 31 H 1.08999 * 109.46820 * 270.11254 * 22 21 20 32 32 H 1.08995 * 109.47200 * 30.11877 * 22 21 20 33 33 H 1.09002 * 109.46913 * 150.11761 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1473 1.8889 -0.6523 7 6 4.1432 0.8784 1.2281 8 7 3.4062 0.3367 2.1730 9 14 6.0049 0.8813 1.3819 10 1 6.4417 2.1143 2.0850 11 1 6.4395 -0.3097 2.1551 12 1 6.6135 0.8416 0.0279 13 7 1.6525 2.0974 -1.2519 14 6 0.4351 2.6644 -1.3670 15 8 -0.3417 2.6319 -0.4320 16 6 0.0455 3.3236 -2.6262 17 6 0.8531 3.4543 -3.8479 18 6 0.0889 4.1246 -4.7254 19 35 0.5950 4.5941 -6.4859 20 8 -1.0916 4.4079 -4.1531 21 6 -1.1415 3.9358 -2.9033 22 6 -2.3102 4.0605 -1.9600 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 0.5139 0.8900 26 1 1.8934 -0.5137 0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 3.8293 -0.0610 2.9499 29 1 2.2720 2.1231 -1.9978 30 1 1.8562 3.0870 -4.0068 31 1 -2.2150 4.9805 -1.3832 32 1 -3.2377 4.0845 -2.5319 33 1 -2.3230 3.2067 -1.2826 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396695284.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:11 Heat of formation + Delta-G solvation = -44.631127 kcal Electronic energy + Delta-G solvation = -18572.699757 eV Core-core repulsion = 15452.629440 eV Total energy + Delta-G solvation = -3120.070317 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 315.026 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.75258 -40.46879 -36.95265 -34.57803 -34.07962 -33.74352 -32.66256 -31.68631 -29.07452 -27.42481 -25.27925 -24.20384 -22.52634 -21.24255 -20.90425 -19.14734 -18.07149 -17.69161 -17.16751 -16.73350 -16.15832 -16.07385 -15.38264 -14.61773 -14.53555 -14.37137 -14.08934 -14.01235 -13.71232 -13.44519 -13.15400 -12.87650 -12.85133 -12.67979 -12.37443 -12.15347 -12.04437 -11.74133 -11.56651 -11.04501 -10.91604 -10.78414 -10.50571 -9.72282 -9.50517 -8.14682 -6.31478 -0.30705 0.19751 0.69418 1.46165 1.46596 1.56910 1.96433 2.37008 2.43622 2.66750 3.15190 3.62183 3.72589 3.88983 4.36431 4.50337 4.52761 4.59468 4.60204 4.62855 4.79225 4.97477 5.09354 5.17048 5.28792 5.46082 5.57318 5.62932 5.69623 5.82325 5.94578 6.18587 6.75457 6.97808 7.34199 7.54417 8.90680 Molecular weight = 315.03amu Principal moments of inertia in cm(-1) A = 0.018129 B = 0.003849 C = 0.003318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.141894 B = 7272.457510 C = 8435.609340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.121 4.121 3 C 0.280 3.720 4 H 0.004 0.996 5 C -0.549 4.549 6 H 0.070 0.930 7 C 0.018 3.982 8 N -0.913 5.913 9 Si 0.968 3.032 10 H -0.279 1.279 11 H -0.284 1.284 12 H -0.262 1.262 13 N -0.697 5.697 14 C 0.575 3.425 15 O -0.574 6.574 16 C -0.258 4.258 17 C -0.124 4.124 18 C -0.043 4.043 19 Br 0.078 6.922 20 O -0.163 6.163 21 C 0.097 3.903 22 C -0.080 4.080 23 H 0.044 0.956 24 H 0.042 0.958 25 H 0.030 0.970 26 H 0.073 0.927 27 H 0.038 0.962 28 H 0.265 0.735 29 H 0.401 0.599 30 H 0.185 0.815 31 H 0.102 0.898 32 H 0.107 0.893 33 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.980 8.157 -18.168 21.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.160 4.160 3 C 0.177 3.823 4 H 0.022 0.978 5 C -0.587 4.587 6 H 0.088 0.912 7 C -0.182 4.182 8 N -0.551 5.551 9 Si 0.793 3.207 10 H -0.205 1.205 11 H -0.209 1.209 12 H -0.186 1.186 13 N -0.345 5.345 14 C 0.363 3.637 15 O -0.457 6.457 16 C -0.264 4.264 17 C -0.146 4.146 18 C -0.169 4.169 19 Br 0.161 6.839 20 O -0.060 6.060 21 C 0.042 3.958 22 C -0.136 4.136 23 H 0.063 0.937 24 H 0.061 0.939 25 H 0.049 0.951 26 H 0.092 0.908 27 H 0.057 0.943 28 H 0.074 0.926 29 H 0.235 0.765 30 H 0.202 0.798 31 H 0.120 0.880 32 H 0.126 0.874 33 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -7.517 8.351 -18.133 21.332 hybrid contribution 1.289 -0.278 0.525 1.419 sum -6.229 8.072 -17.608 20.347 Atomic orbital electron populations 1.21678 0.96834 0.99175 1.00378 1.21789 0.93928 0.99048 1.01263 1.18414 0.93678 0.89213 0.81033 0.97838 1.21562 0.91427 1.38979 1.06718 0.91231 1.25716 1.03111 0.94339 0.95022 1.70036 1.36986 1.38299 1.09819 0.85411 0.79352 0.77416 0.78552 1.20478 1.20941 1.18579 1.46097 1.15017 1.55696 1.17723 1.17418 0.82210 0.78063 0.86024 1.90707 1.52154 1.61932 1.40917 1.21330 0.97109 1.11483 0.96436 1.23031 1.01444 0.99914 0.90232 1.23830 0.87749 1.09441 0.95862 1.96866 1.87963 1.92649 1.06374 1.83787 1.34455 1.62871 1.24922 1.23364 0.97263 0.92582 0.82626 1.20741 0.91950 1.05657 0.95223 0.93665 0.93871 0.95088 0.90845 0.94288 0.92582 0.76492 0.79822 0.87996 0.87446 0.88548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.46 8.51 71.98 0.61 -4.85 16 2 C -0.12 -5.92 5.45 30.60 0.17 -5.76 16 3 C 0.28 14.20 2.24 44.25 0.10 14.30 16 4 H 0.00 0.22 7.58 -2.39 -0.02 0.21 16 5 C -0.55 -28.77 8.73 25.60 0.22 -28.55 16 6 H 0.07 3.44 7.74 -2.91 -0.02 3.41 16 7 C 0.02 0.98 5.29 84.66 0.45 1.43 16 8 N -0.91 -51.56 11.29 21.45 0.24 -51.32 16 9 Si 0.97 41.69 29.54 68.60 2.03 43.72 16 10 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 11 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 12 H -0.26 -10.68 7.11 99.48 0.71 -9.98 16 13 N -0.70 -29.11 5.02 -449.41 -2.26 -31.37 16 14 C 0.57 23.06 6.38 86.65 0.55 23.61 16 15 O -0.57 -26.03 11.98 -4.05 -0.05 -26.08 16 16 C -0.26 -8.30 6.31 -18.99 -0.12 -8.42 16 17 C -0.12 -3.27 10.54 23.68 0.25 -3.02 16 18 C -0.04 -1.05 7.76 66.92 0.52 -0.53 16 19 Br 0.08 1.42 34.08 -20.37 -0.69 0.72 16 20 O -0.16 -4.22 10.52 4.06 0.04 -4.18 16 21 C 0.10 2.70 7.37 25.26 0.19 2.89 16 22 C -0.08 -1.82 9.89 71.24 0.70 -1.11 16 23 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 24 H 0.04 1.85 5.64 -2.39 -0.01 1.83 16 25 H 0.03 1.46 7.84 -2.38 -0.02 1.44 16 26 H 0.07 4.00 5.95 -2.39 -0.01 3.99 16 27 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 28 H 0.26 14.19 8.31 -92.71 -0.77 13.42 16 29 H 0.40 14.48 7.71 -92.71 -0.71 13.77 16 30 H 0.18 4.02 7.74 -2.91 -0.02 3.99 16 31 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 32 H 0.11 1.74 8.14 -2.39 -0.02 1.73 16 33 H 0.10 2.65 6.49 -2.39 -0.02 2.64 16 Total: -1.00 -62.44 299.79 3.39 -59.05 By element: Atomic # 1 Polarization: 19.04 SS G_CDS: 0.43 Total: 19.47 kcal Atomic # 6 Polarization: -13.66 SS G_CDS: 3.64 Total: -10.02 kcal Atomic # 7 Polarization: -80.67 SS G_CDS: -2.01 Total: -82.69 kcal Atomic # 8 Polarization: -30.26 SS G_CDS: -0.01 Total: -30.26 kcal Atomic # 14 Polarization: 41.69 SS G_CDS: 2.03 Total: 43.72 kcal Atomic # 35 Polarization: 1.42 SS G_CDS: -0.69 Total: 0.72 kcal Total: -62.44 3.39 -59.05 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396695284.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.421 kcal (2) G-P(sol) polarization free energy of solvation -62.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds