Wall clock time and date at job start Tue Mar 31 2020 10:47:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86796 * 119.99582 * 2 1 4 4 H 1.48503 * 109.46782 * 269.99912 * 3 2 1 5 5 H 1.48500 * 109.47698 * 30.00080 * 3 2 1 6 6 H 1.48501 * 109.47197 * 150.00187 * 3 2 1 7 7 C 1.37870 * 119.99927 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00403 * 0.02562 * 7 2 1 9 9 C 1.50706 * 119.99710 * 179.97438 * 7 2 1 10 10 N 1.46502 * 109.46993 * 180.02562 * 9 7 2 11 11 S 1.65597 * 119.99805 * 163.15759 * 10 9 7 12 12 O 1.42098 * 106.40162 * 177.09821 * 11 10 9 13 13 O 1.42096 * 106.40191 * 310.01948 * 11 10 9 14 14 C 1.76201 * 107.21695 * 63.56117 * 11 10 9 15 15 C 1.34224 * 126.56841 * 244.08953 * 14 11 10 16 16 N 1.36936 * 109.89843 * 180.02562 * 15 14 11 17 17 H 0.96996 * 124.98757 * 179.97438 * 16 15 14 18 18 C 1.37417 * 110.01793 * 0.02562 * 16 15 14 19 19 N 1.32695 * 133.16387 * 179.97438 * 18 16 15 20 20 C 1.31614 * 121.69773 * 179.97438 * 19 18 16 21 21 C 1.38610 * 121.59173 * 0.02562 * 20 19 18 22 22 C 1.38359 * 119.39429 * 0.02562 * 21 20 19 23 23 Cl 1.73594 * 120.98911 * 180.02562 * 22 21 20 24 24 C 1.39818 * 118.01774 * 359.69975 * 22 21 20 25 25 H 0.97000 * 119.99935 * 359.97438 * 1 2 3 26 26 H 1.09004 * 109.46736 * 60.00334 * 9 7 2 27 27 H 1.08998 * 109.47160 * 300.00698 * 9 7 2 28 28 H 0.96999 * 120.00040 * 343.15854 * 10 9 7 29 29 H 1.07999 * 125.05128 * 359.97438 * 15 14 11 30 30 H 1.07994 * 119.20001 * 179.97438 * 20 19 18 31 31 H 1.07996 * 120.29894 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0000 10 7 4.0000 -2.5752 0.0001 11 16 5.5699 -2.8983 -0.4160 12 8 5.7481 -4.2986 -0.2532 13 8 5.8071 -2.2221 -1.6430 14 6 6.5983 -2.1228 0.7864 15 6 7.4703 -1.1257 0.5694 16 7 8.0887 -0.7838 1.7424 17 1 8.7592 -0.0892 1.8357 18 6 7.6205 -1.5701 2.7675 19 7 7.8968 -1.6308 4.0639 20 6 7.2987 -2.4926 4.8589 21 6 6.3488 -3.3822 4.3820 22 6 6.0188 -3.3677 3.0384 23 17 4.8345 -4.4629 2.3971 24 6 6.6625 -2.4399 2.2140 25 1 -0.4850 0.8400 0.0004 26 1 3.8752 -0.6795 0.8895 27 1 3.8746 -0.6806 -0.8904 28 1 3.4037 -3.3004 0.2438 29 1 7.6571 -0.6625 -0.3882 30 1 7.5549 -2.5073 5.9079 31 1 5.8712 -4.0808 5.0530 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000487366171.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:47:35 Heat of formation + Delta-G solvation = -2.773738 kcal Electronic energy + Delta-G solvation = -21953.081491 eV Core-core repulsion = 18388.466460 eV Total energy + Delta-G solvation = -3564.615031 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 315.023 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.84215 -38.25795 -36.72973 -36.55104 -35.34401 -34.70952 -32.93491 -32.18004 -30.52652 -29.61043 -27.34245 -24.02450 -23.09103 -22.18180 -21.98820 -19.06067 -18.66710 -17.48275 -17.22673 -16.61989 -16.11603 -15.87072 -15.48474 -15.43155 -15.02229 -14.39456 -14.10813 -13.55112 -13.47278 -12.99467 -12.92427 -12.72076 -12.48783 -12.16139 -11.97095 -11.64361 -11.57138 -11.18899 -10.92462 -10.80089 -10.60261 -10.22775 -9.97891 -9.79787 -9.51571 -8.88765 -8.85000 -8.60143 -8.46998 -6.18361 -4.18734 0.49460 0.94853 1.01933 1.90634 1.96321 2.37178 3.22017 3.28441 3.29034 3.48935 3.66084 4.10426 4.19245 4.29694 4.31759 4.57847 4.63638 4.91540 5.00671 5.13841 5.15250 5.44268 5.70119 5.74908 5.93290 6.22015 6.40847 6.85366 6.87913 6.94932 7.41761 7.63197 7.87299 8.38912 8.84502 9.40050 10.94266 Molecular weight = 315.02amu Principal moments of inertia in cm(-1) A = 0.013617 B = 0.005928 C = 0.005719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2055.825601 B = 4721.829534 C = 4895.186378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.075 3.925 3 Si 0.871 3.129 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.265 1.265 7 C -0.526 4.526 8 H 0.083 0.917 9 C 0.220 3.780 10 N -1.092 6.092 11 S 2.710 3.290 12 O -0.962 6.962 13 O -0.970 6.970 14 C -0.735 4.735 15 C 0.206 3.794 16 N -0.569 5.569 17 H 0.428 0.572 18 C 0.294 3.706 19 N -0.490 5.490 20 C 0.146 3.854 21 C -0.182 4.182 22 C 0.044 3.956 23 Cl -0.021 7.021 24 C -0.078 4.078 25 H 0.267 0.733 26 H 0.016 0.984 27 H 0.030 0.970 28 H 0.414 0.586 29 H 0.204 0.796 30 H 0.174 0.826 31 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.620 -3.339 7.811 18.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.129 4.129 3 Si 0.697 3.303 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.190 1.190 7 C -0.566 4.566 8 H 0.101 0.899 9 C 0.096 3.904 10 N -0.854 5.854 11 S 2.795 3.205 12 O -0.952 6.952 13 O -0.960 6.960 14 C -0.826 4.826 15 C 0.072 3.928 16 N -0.174 5.174 17 H 0.267 0.733 18 C 0.061 3.939 19 N -0.204 5.204 20 C -0.019 4.019 21 C -0.204 4.204 22 C 0.009 3.991 23 Cl 0.009 6.991 24 C -0.086 4.086 25 H 0.077 0.923 26 H 0.034 0.966 27 H 0.048 0.952 28 H 0.250 0.750 29 H 0.221 0.779 30 H 0.191 0.809 31 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 17.509 -2.926 7.336 19.208 hybrid contribution -0.188 0.866 0.489 1.012 sum 17.321 -2.060 7.825 19.117 Atomic orbital electron populations 1.69879 1.06116 1.27195 1.49837 1.24842 0.94795 0.98911 0.94325 0.86925 0.80407 0.83884 0.79035 1.19589 1.20891 1.18969 1.21051 0.88141 0.95185 1.52189 0.89902 1.19399 0.97578 0.77449 0.96008 1.55193 1.26544 1.16944 1.86726 1.01257 0.72875 0.73127 0.73203 1.93575 1.85728 1.29196 1.86717 1.93553 1.85650 1.76508 1.40254 1.32352 1.22444 1.17029 1.10809 1.21998 0.89119 0.91858 0.89849 1.41840 1.37281 1.32656 1.05587 0.73327 1.18265 0.94692 0.92875 0.88081 1.66511 1.28299 1.24083 1.01459 1.22501 0.91339 0.89203 0.98884 1.21916 1.01607 1.03197 0.93663 1.20864 0.92852 0.92276 0.93145 1.98457 1.54334 1.60437 1.85892 1.18723 0.99473 0.98089 0.92274 0.92347 0.96577 0.95176 0.75037 0.77912 0.80948 0.82911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.37 13.96 55.43 0.77 -25.59 16 2 C 0.07 2.08 5.47 -17.82 -0.10 1.99 16 3 Si 0.87 20.55 27.47 -169.99 -4.67 15.89 16 4 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.27 -5.91 6.54 56.52 0.37 -5.54 16 7 C -0.53 -14.29 9.83 -34.44 -0.34 -14.63 16 8 H 0.08 2.39 7.91 -52.49 -0.42 1.97 16 9 C 0.22 5.08 5.04 -5.19 -0.03 5.06 16 10 N -1.09 -21.92 5.43 -11.65 -0.06 -21.98 16 11 S 2.71 49.43 5.15 -107.50 -0.55 48.87 16 12 O -0.96 -18.38 15.90 -57.17 -0.91 -19.28 16 13 O -0.97 -19.23 17.26 -57.17 -0.99 -20.22 16 14 C -0.73 -11.62 6.33 -37.72 -0.24 -11.86 16 15 C 0.21 2.51 11.47 -16.69 -0.19 2.32 16 16 N -0.57 -6.29 6.05 -12.15 -0.07 -6.37 16 17 H 0.43 3.07 8.96 -40.82 -0.37 2.70 16 18 C 0.29 4.12 8.43 -155.68 -1.31 2.81 16 19 N -0.49 -6.37 10.39 -12.29 -0.13 -6.49 16 20 C 0.15 1.55 11.14 -17.51 -0.20 1.35 16 21 C -0.18 -2.08 9.93 -39.40 -0.39 -2.47 16 22 C 0.04 0.66 6.40 -38.95 -0.25 0.41 16 23 Cl -0.02 -0.32 25.12 -51.86 -1.30 -1.63 16 24 C -0.08 -1.23 6.24 -105.09 -0.66 -1.89 16 25 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 26 H 0.02 0.37 7.20 -51.93 -0.37 0.00 16 27 H 0.03 0.70 7.18 -51.93 -0.37 0.32 16 28 H 0.41 8.00 8.13 -34.47 -0.28 7.72 16 29 H 0.20 1.74 8.06 -52.49 -0.42 1.31 16 30 H 0.17 1.10 8.06 -52.49 -0.42 0.68 16 31 H 0.15 1.28 8.06 -52.49 -0.42 0.85 16 LS Contribution 299.63 15.07 4.52 4.52 Total: -1.00 -34.92 299.63 -9.34 -44.25 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -2.24 Total: 4.95 kcal Atomic # 6 Polarization: -13.22 SS G_CDS: -3.70 Total: -16.91 kcal Atomic # 7 Polarization: -60.95 SS G_CDS: 0.51 Total: -60.44 kcal Atomic # 8 Polarization: -37.61 SS G_CDS: -1.90 Total: -39.51 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -4.67 Total: 15.89 kcal Atomic # 16 Polarization: 49.43 SS G_CDS: -0.55 Total: 48.87 kcal Atomic # 17 Polarization: -0.32 SS G_CDS: -1.30 Total: -1.63 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -34.92 -9.34 -44.25 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000487366171.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.481 kcal (2) G-P(sol) polarization free energy of solvation -34.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds