Wall clock time and date at job start Tue Mar 31 2020 10:47:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86796 * 119.99582 * 2 1 4 4 H 1.48503 * 109.46782 * 269.99912 * 3 2 1 5 5 H 1.48500 * 109.47698 * 30.00080 * 3 2 1 6 6 H 1.48501 * 109.47197 * 150.00187 * 3 2 1 7 7 C 1.37870 * 119.99927 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00403 * 0.02562 * 7 2 1 9 9 C 1.50706 * 119.99710 * 179.97438 * 7 2 1 10 10 N 1.46502 * 109.46993 * 180.02562 * 9 7 2 11 11 S 1.65597 * 119.99805 * 163.15759 * 10 9 7 12 12 O 1.42098 * 106.40162 * 177.09821 * 11 10 9 13 13 O 1.42096 * 106.40191 * 310.01948 * 11 10 9 14 14 C 1.76201 * 107.21695 * 63.56117 * 11 10 9 15 15 C 1.34224 * 126.56841 * 244.08953 * 14 11 10 16 16 N 1.36936 * 109.89843 * 180.02562 * 15 14 11 17 17 H 0.96996 * 124.98757 * 179.97438 * 16 15 14 18 18 C 1.37417 * 110.01793 * 0.02562 * 16 15 14 19 19 N 1.32695 * 133.16387 * 179.97438 * 18 16 15 20 20 C 1.31614 * 121.69773 * 179.97438 * 19 18 16 21 21 C 1.38610 * 121.59173 * 0.02562 * 20 19 18 22 22 C 1.38359 * 119.39429 * 0.02562 * 21 20 19 23 23 Cl 1.73594 * 120.98911 * 180.02562 * 22 21 20 24 24 C 1.39818 * 118.01774 * 359.69975 * 22 21 20 25 25 H 0.97000 * 119.99935 * 359.97438 * 1 2 3 26 26 H 1.09004 * 109.46736 * 60.00334 * 9 7 2 27 27 H 1.08998 * 109.47160 * 300.00698 * 9 7 2 28 28 H 0.96999 * 120.00040 * 343.15854 * 10 9 7 29 29 H 1.07999 * 125.05128 * 359.97438 * 15 14 11 30 30 H 1.07994 * 119.20001 * 179.97438 * 20 19 18 31 31 H 1.07996 * 120.29894 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0000 10 7 4.0000 -2.5752 0.0001 11 16 5.5699 -2.8983 -0.4160 12 8 5.7481 -4.2986 -0.2532 13 8 5.8071 -2.2221 -1.6430 14 6 6.5983 -2.1228 0.7864 15 6 7.4703 -1.1257 0.5694 16 7 8.0887 -0.7838 1.7424 17 1 8.7592 -0.0892 1.8357 18 6 7.6205 -1.5701 2.7675 19 7 7.8968 -1.6308 4.0639 20 6 7.2987 -2.4926 4.8589 21 6 6.3488 -3.3822 4.3820 22 6 6.0188 -3.3677 3.0384 23 17 4.8345 -4.4629 2.3971 24 6 6.6625 -2.4399 2.2140 25 1 -0.4850 0.8400 0.0004 26 1 3.8752 -0.6795 0.8895 27 1 3.8746 -0.6806 -0.8904 28 1 3.4037 -3.3004 0.2438 29 1 7.6571 -0.6625 -0.3882 30 1 7.5549 -2.5073 5.9079 31 1 5.8712 -4.0808 5.0530 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000487366171.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:47:35 Heat of formation + Delta-G solvation = -30.247170 kcal Electronic energy + Delta-G solvation = -21954.272828 eV Core-core repulsion = 18388.466460 eV Total energy + Delta-G solvation = -3565.806368 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 315.023 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.79760 -39.19664 -38.14047 -37.69460 -36.82529 -36.48100 -34.21085 -33.91234 -31.47908 -30.58154 -29.28721 -24.97289 -24.10107 -23.88037 -23.27907 -20.33717 -19.90618 -19.16111 -18.20579 -17.88179 -17.62512 -17.09716 -17.00964 -16.46156 -16.10761 -15.95804 -15.23630 -15.09570 -14.72726 -14.44965 -14.36843 -13.97838 -13.70577 -13.65663 -13.25847 -13.11856 -13.02244 -12.73535 -12.50187 -12.34077 -12.00623 -11.83902 -11.59749 -11.29869 -10.87798 -10.76512 -10.23589 -9.78477 -9.62772 -8.31047 -6.37215 -0.51872 -0.38343 0.06050 0.86376 0.91519 1.37183 1.39306 1.48083 1.48797 2.21176 2.34036 2.56152 2.81245 3.03922 3.19517 3.40308 3.56004 3.67864 3.93396 4.12002 4.26398 4.33657 4.46368 4.76540 4.87082 4.99563 5.05231 5.11657 5.43792 5.48837 6.07834 6.19576 6.28319 6.68551 6.73085 7.25746 8.84865 Molecular weight = 315.02amu Principal moments of inertia in cm(-1) A = 0.013617 B = 0.005928 C = 0.005719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2055.825601 B = 4721.829534 C = 4895.186378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C 0.015 3.985 3 Si 0.934 3.066 4 H -0.261 1.261 5 H -0.280 1.280 6 H -0.240 1.240 7 C -0.537 4.537 8 H 0.047 0.953 9 C 0.230 3.770 10 N -1.100 6.100 11 S 2.725 3.275 12 O -0.978 6.978 13 O -0.990 6.990 14 C -0.772 4.772 15 C 0.232 3.768 16 N -0.549 5.549 17 H 0.447 0.553 18 C 0.279 3.721 19 N -0.496 5.496 20 C 0.152 3.848 21 C -0.171 4.171 22 C 0.013 3.987 23 Cl -0.044 7.044 24 C -0.105 4.105 25 H 0.269 0.731 26 H 0.027 0.973 27 H 0.036 0.964 28 H 0.413 0.587 29 H 0.241 0.759 30 H 0.219 0.781 31 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.463 -1.606 9.259 21.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.184 4.184 3 Si 0.757 3.243 4 H -0.186 1.186 5 H -0.205 1.205 6 H -0.163 1.163 7 C -0.576 4.576 8 H 0.065 0.935 9 C 0.105 3.895 10 N -0.860 5.860 11 S 2.815 3.185 12 O -0.968 6.968 13 O -0.980 6.980 14 C -0.868 4.868 15 C 0.095 3.905 16 N -0.155 5.155 17 H 0.290 0.710 18 C 0.046 3.954 19 N -0.209 5.209 20 C -0.013 4.013 21 C -0.192 4.192 22 C -0.023 4.023 23 Cl -0.015 7.015 24 C -0.113 4.113 25 H 0.078 0.922 26 H 0.045 0.955 27 H 0.053 0.947 28 H 0.248 0.752 29 H 0.257 0.743 30 H 0.236 0.764 31 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 20.360 -1.212 8.769 22.201 hybrid contribution -1.017 0.238 0.154 1.056 sum 19.342 -0.974 8.924 21.324 Atomic orbital electron populations 1.70030 1.08105 1.28405 1.51475 1.25788 0.95640 1.03115 0.93843 0.85907 0.79989 0.78642 0.79806 1.18558 1.20529 1.16284 1.21333 0.90533 0.94047 1.51661 0.93486 1.19148 0.94710 0.79186 0.96487 1.55183 1.27942 1.15778 1.87119 1.00443 0.72212 0.72784 0.73061 1.93550 1.85678 1.30436 1.87111 1.93515 1.85724 1.76737 1.42042 1.31771 1.24570 1.19934 1.10532 1.22566 0.86852 0.89848 0.91206 1.41837 1.36899 1.32273 1.04541 0.70966 1.18508 0.94804 0.93216 0.88844 1.66660 1.28576 1.24674 1.01039 1.23324 0.89887 0.87591 1.00505 1.22362 1.00980 1.03217 0.92633 1.21220 0.93558 0.92862 0.94619 1.98443 1.55363 1.61266 1.86387 1.18988 1.00689 0.99198 0.92432 0.92164 0.95515 0.94658 0.75202 0.74292 0.76421 0.80085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.97 13.96 21.45 0.30 -56.67 16 2 C 0.02 0.85 5.47 84.65 0.46 1.31 16 3 Si 0.93 41.47 27.47 68.60 1.88 43.35 16 4 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 5 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 6 H -0.24 -9.57 6.54 99.48 0.65 -8.92 16 7 C -0.54 -29.82 9.83 25.60 0.25 -29.57 16 8 H 0.05 2.86 7.91 -2.91 -0.02 2.84 16 9 C 0.23 10.54 5.04 85.63 0.43 10.98 16 10 N -1.10 -44.85 5.43 -190.78 -1.04 -45.89 16 11 S 2.73 98.92 5.15 -56.49 -0.29 98.62 16 12 O -0.98 -37.95 15.90 -128.00 -2.04 -39.99 16 13 O -0.99 -38.55 17.26 -128.00 -2.21 -40.76 16 14 C -0.77 -23.26 6.33 23.47 0.15 -23.11 16 15 C 0.23 4.95 11.47 82.98 0.95 5.90 16 16 N -0.55 -10.27 6.05 -192.35 -1.16 -11.44 16 17 H 0.45 4.63 8.96 -92.71 -0.83 3.80 16 18 C 0.28 7.07 8.43 133.90 1.13 8.20 16 19 N -0.50 -11.23 10.39 -192.79 -2.00 -13.23 16 20 C 0.15 2.66 11.14 84.81 0.95 3.60 16 21 C -0.17 -3.47 9.93 22.39 0.22 -3.25 16 22 C 0.01 0.37 6.40 22.68 0.15 0.51 16 23 Cl -0.04 -1.39 25.12 -2.72 -0.07 -1.46 16 24 C -0.11 -3.17 6.24 -20.17 -0.13 -3.30 16 25 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 26 H 0.03 1.18 7.20 -2.39 -0.02 1.16 16 27 H 0.04 1.59 7.18 -2.39 -0.02 1.57 16 28 H 0.41 16.72 8.13 -96.75 -0.79 15.94 16 29 H 0.24 3.11 8.06 -2.91 -0.02 3.09 16 30 H 0.22 1.65 8.06 -2.91 -0.02 1.63 16 31 H 0.18 2.48 8.06 -2.91 -0.02 2.46 16 Total: -1.00 -77.61 299.63 -2.51 -80.13 By element: Atomic # 1 Polarization: 16.51 SS G_CDS: -0.45 Total: 16.06 kcal Atomic # 6 Polarization: -33.29 SS G_CDS: 4.56 Total: -28.73 kcal Atomic # 7 Polarization: -123.32 SS G_CDS: -3.90 Total: -127.23 kcal Atomic # 8 Polarization: -76.50 SS G_CDS: -4.24 Total: -80.74 kcal Atomic # 14 Polarization: 41.47 SS G_CDS: 1.88 Total: 43.35 kcal Atomic # 16 Polarization: 98.92 SS G_CDS: -0.29 Total: 98.62 kcal Atomic # 17 Polarization: -1.39 SS G_CDS: -0.07 Total: -1.46 kcal Total: -77.61 -2.51 -80.13 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000487366171.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.880 kcal (2) G-P(sol) polarization free energy of solvation -77.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds