Wall clock time and date at job start Tue Mar 31 2020 10:32:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.47251 * 2 1 4 4 C 1.50697 * 109.46882 * 239.99796 * 2 1 3 5 5 H 1.08005 * 120.00369 * 240.00312 * 4 2 1 6 6 C 1.37877 * 120.00277 * 60.00432 * 4 2 1 7 7 N 1.31517 * 119.99559 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 120.00379 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.47160 * 0.02562 * 8 6 4 10 10 H 1.48494 * 109.46994 * 120.00114 * 8 6 4 11 11 H 1.48498 * 109.47159 * 240.00174 * 8 6 4 12 12 C 1.52998 * 109.46759 * 120.00131 * 2 1 3 13 13 S 1.81397 * 109.47284 * 299.99661 * 12 2 1 14 14 C 1.76198 * 103.00330 * 179.97438 * 13 12 2 15 15 N 1.32474 * 119.71342 * 0.02562 * 14 13 12 16 16 C 1.31943 * 121.62416 * 180.02562 * 15 14 13 17 17 C 1.38066 * 120.87872 * 359.97438 * 16 15 14 18 18 C 1.38868 * 119.34174 * 0.28047 * 17 16 15 19 19 C 1.38379 * 118.50636 * 359.45906 * 18 17 16 20 20 Br 1.89102 * 120.45938 * 180.26557 * 19 18 17 21 21 H 1.08994 * 109.47004 * 300.00398 * 1 2 3 22 22 H 1.09003 * 109.46715 * 59.99835 * 1 2 3 23 23 H 1.08990 * 109.47362 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.46492 * 179.97438 * 3 2 1 25 25 H 1.08993 * 109.46903 * 299.99951 * 3 2 1 26 26 H 1.08996 * 109.46729 * 60.00070 * 3 2 1 27 27 H 0.97001 * 119.99876 * 179.97438 * 7 6 4 28 28 H 1.09003 * 109.46780 * 179.97438 * 12 2 1 29 29 H 1.09002 * 109.47208 * 59.99873 * 12 2 1 30 30 H 1.08005 * 119.56224 * 180.02562 * 16 15 14 31 31 H 1.08002 * 120.32462 * 179.97438 * 17 16 15 32 32 H 1.08003 * 120.74243 * 179.71671 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5886 -1.1314 6 6 1.6993 -0.2394 -2.4827 7 7 0.9429 0.8296 -2.6034 8 14 2.3225 -1.1196 -4.0080 9 1 3.1473 -2.2865 -3.6038 10 1 1.1678 -1.5866 -4.8165 11 1 3.1473 -0.1859 -4.8161 12 6 2.0400 -0.7213 1.2492 13 16 1.4354 0.1338 2.7303 14 6 2.1118 -0.8243 4.0452 15 7 2.8599 -1.8823 3.7694 16 6 3.3847 -2.6265 4.7241 17 6 3.1714 -2.3261 6.0547 18 6 2.3885 -1.2284 6.3875 19 6 1.8558 -0.4629 5.3652 20 35 0.7880 1.0482 5.7556 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0275 -0.0005 24 1 3.1301 1.4424 0.0005 25 1 1.6768 1.9563 -0.8899 26 1 1.6768 1.9562 0.8900 27 1 0.7089 1.1613 -3.4844 28 1 3.1300 -0.7217 1.2490 29 1 1.6766 -1.7489 1.2492 30 1 3.9899 -3.4815 4.4614 31 1 3.6049 -2.9416 6.8290 32 1 2.2032 -0.9754 7.4210 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000568270698.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:32:53 Heat of formation + Delta-G solvation = 23.046473 kcal Electronic energy + Delta-G solvation = -16032.384382 eV Core-core repulsion = 13358.001657 eV Total energy + Delta-G solvation = -2674.382725 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 314.999 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.94513 -35.97360 -33.15652 -31.97176 -31.51011 -29.47193 -26.24980 -25.65647 -25.11834 -23.89870 -23.09232 -19.08156 -17.85021 -16.55801 -15.96126 -15.82408 -14.75045 -14.61870 -14.45962 -13.74645 -13.38251 -13.14960 -12.69467 -12.38191 -11.77705 -11.41213 -11.32662 -11.26081 -10.87908 -10.69505 -10.58198 -10.31431 -10.18812 -10.05325 -9.77867 -9.53734 -9.42770 -9.39889 -9.19338 -8.61365 -8.37361 -7.15004 -5.99195 -4.09934 0.81927 1.07622 1.54563 1.89501 2.97730 3.28037 3.36628 3.40789 3.56645 4.41360 4.58546 4.63261 4.87849 5.03090 5.27040 5.28303 5.69615 5.88610 6.07492 6.19300 6.36724 6.58652 6.84380 6.94914 7.08376 7.09140 7.38261 7.61339 7.72331 7.73228 8.04978 8.17174 8.40835 8.89505 9.55263 11.01958 Molecular weight = 315.00amu Principal moments of inertia in cm(-1) A = 0.025100 B = 0.004235 C = 0.003715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.271967 B = 6610.627391 C = 7534.833545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.079 3.921 3 C -0.135 4.135 4 C -0.502 4.502 5 H 0.057 0.943 6 C 0.066 3.934 7 N -0.884 5.884 8 Si 0.893 3.107 9 H -0.274 1.274 10 H -0.284 1.284 11 H -0.284 1.284 12 C -0.072 4.072 13 S -0.041 6.041 14 C 0.144 3.856 15 N -0.482 5.482 16 C 0.131 3.869 17 C -0.195 4.195 18 C -0.031 4.031 19 C -0.143 4.143 20 Br -0.026 7.026 21 H 0.017 0.983 22 H 0.086 0.914 23 H 0.027 0.973 24 H 0.027 0.973 25 H 0.086 0.914 26 H 0.017 0.983 27 H 0.260 0.740 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.161 0.839 31 H 0.140 0.860 32 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.515 -2.159 19.006 19.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.077 3.923 3 C -0.193 4.193 4 C -0.542 4.542 5 H 0.075 0.925 6 C -0.135 4.135 7 N -0.523 5.523 8 Si 0.721 3.279 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.210 1.210 12 C -0.221 4.221 13 S 0.207 5.793 14 C -0.106 4.106 15 N -0.195 5.195 16 C -0.031 4.031 17 C -0.221 4.221 18 C -0.060 4.060 19 C -0.233 4.233 20 Br 0.059 6.941 21 H 0.036 0.964 22 H 0.105 0.895 23 H 0.046 0.954 24 H 0.046 0.954 25 H 0.105 0.895 26 H 0.036 0.964 27 H 0.070 0.930 28 H 0.096 0.904 29 H 0.096 0.904 30 H 0.178 0.822 31 H 0.158 0.842 32 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 0.445 -0.645 18.027 18.044 hybrid contribution 1.319 -1.870 0.001 2.288 sum 1.765 -2.514 18.028 18.288 Atomic orbital electron populations 1.21900 0.97389 0.99334 1.00655 1.18059 0.92953 0.92511 0.88793 1.21898 0.98576 0.98142 1.00651 1.21039 1.31481 1.12055 0.89654 0.92475 1.24886 0.94903 0.94951 0.98760 1.69828 1.36587 1.22714 1.23123 0.86518 0.78635 0.79703 0.83037 1.19830 1.21035 1.21029 1.24128 1.03240 1.01790 0.92893 1.86074 1.61120 1.35259 0.96839 1.23822 0.95354 0.95444 0.95983 1.68396 1.09908 1.04867 1.36346 1.22922 0.94417 0.96872 0.88906 1.21994 1.02598 0.99398 0.98080 1.21422 0.93125 0.92729 0.98689 1.22356 1.06464 0.99357 0.95170 1.96698 1.66953 1.36296 1.94133 0.96373 0.89513 0.95408 0.95410 0.89513 0.96377 0.93015 0.90404 0.90406 0.82195 0.84242 0.84001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.23 8.01 37.16 0.30 -2.93 16 2 C 0.08 1.90 0.52 -155.66 -0.08 1.82 16 3 C -0.13 -3.22 8.01 37.16 0.30 -2.93 16 4 C -0.50 -13.33 8.01 -34.44 -0.28 -13.60 16 5 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 6 C 0.07 1.77 5.15 -17.82 -0.09 1.68 16 7 N -0.88 -24.01 9.35 55.43 0.52 -23.50 16 8 Si 0.89 20.83 29.54 -169.99 -5.02 15.81 16 9 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 12 C -0.07 -1.55 4.14 37.16 0.15 -1.40 16 13 S -0.04 -0.77 17.65 -107.50 -1.90 -2.67 16 14 C 0.14 2.45 7.00 -16.91 -0.12 2.33 16 15 N -0.48 -8.00 9.43 -12.09 -0.11 -8.11 16 16 C 0.13 1.62 11.17 -17.57 -0.20 1.43 16 17 C -0.20 -1.99 10.10 -39.41 -0.40 -2.39 16 18 C -0.03 -0.35 9.93 -39.30 -0.39 -0.74 16 19 C -0.14 -2.07 6.26 -39.16 -0.25 -2.32 16 20 Br -0.03 -0.35 32.43 -68.01 -2.21 -2.55 16 21 H 0.02 0.39 6.91 -51.93 -0.36 0.03 16 22 H 0.09 2.26 6.07 -51.93 -0.32 1.95 16 23 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.09 2.26 6.07 -51.93 -0.32 1.95 16 26 H 0.02 0.39 6.91 -51.93 -0.36 0.03 16 27 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 28 H 0.08 1.70 8.14 -51.92 -0.42 1.28 16 29 H 0.08 1.70 8.14 -51.92 -0.42 1.28 16 30 H 0.16 1.48 8.06 -52.48 -0.42 1.06 16 31 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 32 H 0.14 1.19 8.06 -52.48 -0.42 0.77 16 LS Contribution 296.80 15.07 4.47 4.47 Total: -1.00 -28.01 296.80 -9.14 -37.15 By element: Atomic # 1 Polarization: 2.28 SS G_CDS: -3.85 Total: -1.56 kcal Atomic # 6 Polarization: -17.99 SS G_CDS: -1.05 Total: -19.04 kcal Atomic # 7 Polarization: -32.01 SS G_CDS: 0.40 Total: -31.61 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Atomic # 16 Polarization: -0.77 SS G_CDS: -1.90 Total: -2.67 kcal Atomic # 35 Polarization: -0.35 SS G_CDS: -2.21 Total: -2.55 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -28.01 -9.14 -37.15 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568270698.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.198 kcal (2) G-P(sol) polarization free energy of solvation -28.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.151 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds