Wall clock time and date at job start Tue Mar 31 2020 10:32:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.47251 * 2 1 4 4 C 1.50697 * 109.46882 * 239.99796 * 2 1 3 5 5 H 1.08005 * 120.00369 * 240.00312 * 4 2 1 6 6 C 1.37877 * 120.00277 * 60.00432 * 4 2 1 7 7 N 1.31517 * 119.99559 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 120.00379 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.47160 * 0.02562 * 8 6 4 10 10 H 1.48494 * 109.46994 * 120.00114 * 8 6 4 11 11 H 1.48498 * 109.47159 * 240.00174 * 8 6 4 12 12 C 1.52998 * 109.46759 * 120.00131 * 2 1 3 13 13 S 1.81397 * 109.47284 * 299.99661 * 12 2 1 14 14 C 1.76198 * 103.00330 * 179.97438 * 13 12 2 15 15 N 1.32474 * 119.71342 * 0.02562 * 14 13 12 16 16 C 1.31943 * 121.62416 * 180.02562 * 15 14 13 17 17 C 1.38066 * 120.87872 * 359.97438 * 16 15 14 18 18 C 1.38868 * 119.34174 * 0.28047 * 17 16 15 19 19 C 1.38379 * 118.50636 * 359.45906 * 18 17 16 20 20 Br 1.89102 * 120.45938 * 180.26557 * 19 18 17 21 21 H 1.08994 * 109.47004 * 300.00398 * 1 2 3 22 22 H 1.09003 * 109.46715 * 59.99835 * 1 2 3 23 23 H 1.08990 * 109.47362 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.46492 * 179.97438 * 3 2 1 25 25 H 1.08993 * 109.46903 * 299.99951 * 3 2 1 26 26 H 1.08996 * 109.46729 * 60.00070 * 3 2 1 27 27 H 0.97001 * 119.99876 * 179.97438 * 7 6 4 28 28 H 1.09003 * 109.46780 * 179.97438 * 12 2 1 29 29 H 1.09002 * 109.47208 * 59.99873 * 12 2 1 30 30 H 1.08005 * 119.56224 * 180.02562 * 16 15 14 31 31 H 1.08002 * 120.32462 * 179.97438 * 17 16 15 32 32 H 1.08003 * 120.74243 * 179.71671 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5886 -1.1314 6 6 1.6993 -0.2394 -2.4827 7 7 0.9429 0.8296 -2.6034 8 14 2.3225 -1.1196 -4.0080 9 1 3.1473 -2.2865 -3.6038 10 1 1.1678 -1.5866 -4.8165 11 1 3.1473 -0.1859 -4.8161 12 6 2.0400 -0.7213 1.2492 13 16 1.4354 0.1338 2.7303 14 6 2.1118 -0.8243 4.0452 15 7 2.8599 -1.8823 3.7694 16 6 3.3847 -2.6265 4.7241 17 6 3.1714 -2.3261 6.0547 18 6 2.3885 -1.2284 6.3875 19 6 1.8558 -0.4629 5.3652 20 35 0.7880 1.0482 5.7556 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0275 -0.0005 24 1 3.1301 1.4424 0.0005 25 1 1.6768 1.9563 -0.8899 26 1 1.6768 1.9562 0.8900 27 1 0.7089 1.1613 -3.4844 28 1 3.1300 -0.7217 1.2490 29 1 1.6766 -1.7489 1.2492 30 1 3.9899 -3.4815 4.4614 31 1 3.6049 -2.9416 6.8290 32 1 2.2032 -0.9754 7.4210 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000568270698.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:32:52 Heat of formation + Delta-G solvation = 8.760851 kcal Electronic energy + Delta-G solvation = -16033.003853 eV Core-core repulsion = 13358.001657 eV Total energy + Delta-G solvation = -2675.002196 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 314.999 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.98463 -37.89105 -34.21883 -33.50976 -32.97074 -30.52023 -28.01846 -27.60760 -27.16337 -24.93191 -24.13131 -20.92846 -19.04402 -17.94642 -17.62187 -16.86418 -16.65576 -15.89438 -15.65500 -15.30908 -14.85636 -14.57260 -14.19658 -13.96062 -13.28414 -13.25411 -12.93637 -12.72971 -12.47393 -12.39192 -12.25875 -12.08518 -11.90000 -11.49779 -11.29279 -11.20835 -11.05691 -10.60490 -10.41706 -10.41612 -10.27404 -8.54610 -8.01598 -6.18893 -0.21234 0.10654 0.44726 0.59473 1.42015 1.42904 1.48005 1.55614 2.46349 2.56111 3.21350 3.60942 3.70929 3.96577 4.14026 4.29414 4.36330 4.43183 4.72994 4.83449 4.96384 4.99324 5.02976 5.16990 5.18083 5.42861 5.50069 5.63032 5.66109 6.07632 6.18184 6.40474 6.68997 6.84922 7.48588 8.97875 Molecular weight = 315.00amu Principal moments of inertia in cm(-1) A = 0.025100 B = 0.004235 C = 0.003715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.271967 B = 6610.627391 C = 7534.833545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.071 3.929 3 C -0.122 4.122 4 C -0.522 4.522 5 H 0.048 0.952 6 C 0.025 3.975 7 N -0.903 5.903 8 Si 0.950 3.050 9 H -0.272 1.272 10 H -0.281 1.281 11 H -0.281 1.281 12 C -0.056 4.056 13 S -0.063 6.063 14 C 0.118 3.882 15 N -0.517 5.517 16 C 0.116 3.884 17 C -0.165 4.165 18 C -0.030 4.030 19 C -0.151 4.151 20 Br -0.024 7.024 21 H 0.032 0.968 22 H 0.063 0.937 23 H 0.022 0.978 24 H 0.022 0.978 25 H 0.063 0.937 26 H 0.032 0.968 27 H 0.260 0.740 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.190 0.810 31 H 0.188 0.812 32 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.388 -3.399 21.389 21.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.069 3.931 3 C -0.180 4.180 4 C -0.562 4.562 5 H 0.066 0.934 6 C -0.174 4.174 7 N -0.541 5.541 8 Si 0.777 3.223 9 H -0.197 1.197 10 H -0.207 1.207 11 H -0.207 1.207 12 C -0.205 4.205 13 S 0.183 5.817 14 C -0.132 4.132 15 N -0.230 5.230 16 C -0.045 4.045 17 C -0.189 4.189 18 C -0.058 4.058 19 C -0.241 4.241 20 Br 0.062 6.938 21 H 0.051 0.949 22 H 0.082 0.918 23 H 0.041 0.959 24 H 0.041 0.959 25 H 0.082 0.918 26 H 0.051 0.949 27 H 0.070 0.930 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.207 0.793 31 H 0.206 0.794 32 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 1.328 -1.898 20.429 20.560 hybrid contribution 1.116 -1.580 -0.513 2.001 sum 2.444 -3.479 19.916 20.365 Atomic orbital electron populations 1.21730 0.97385 0.98787 1.00153 1.18052 0.92959 0.92595 0.89493 1.21728 0.98082 0.98087 1.00150 1.21298 1.31664 1.12106 0.91100 0.93383 1.25538 0.95118 0.95608 1.01166 1.69948 1.37091 1.23494 1.23602 0.85627 0.78115 0.78697 0.79900 1.19665 1.20703 1.20691 1.23634 1.02178 1.00967 0.93699 1.85807 1.62723 1.36469 0.96712 1.23479 0.97495 0.96519 0.95660 1.68272 1.10670 1.05452 1.38652 1.23549 0.94313 0.97135 0.89485 1.22539 0.99899 0.98315 0.98157 1.21932 0.92155 0.92184 0.99529 1.22549 1.06689 0.99922 0.94900 1.96699 1.66978 1.36349 1.93821 0.94919 0.91819 0.95886 0.95885 0.91817 0.94924 0.92999 0.91637 0.91638 0.79324 0.79434 0.80521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.02 8.01 71.98 0.58 -5.44 16 2 C 0.07 3.51 0.52 -52.93 -0.03 3.48 16 3 C -0.12 -6.01 8.01 71.98 0.58 -5.44 16 4 C -0.52 -28.37 8.01 25.60 0.21 -28.16 16 5 H 0.05 2.63 7.74 -2.91 -0.02 2.60 16 6 C 0.03 1.37 5.15 84.65 0.44 1.80 16 7 N -0.90 -50.01 9.35 21.45 0.20 -49.81 16 8 Si 0.95 43.21 29.54 68.60 2.03 45.23 16 9 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 10 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 11 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 12 C -0.06 -2.48 4.14 71.98 0.30 -2.18 16 13 S -0.06 -2.41 17.65 -56.49 -1.00 -3.41 16 14 C 0.12 3.93 7.00 84.83 0.59 4.53 16 15 N -0.52 -16.63 9.43 -192.16 -1.81 -18.44 16 16 C 0.12 2.53 11.17 84.64 0.95 3.47 16 17 C -0.17 -2.56 10.10 22.38 0.23 -2.34 16 18 C -0.03 -0.55 9.93 22.45 0.22 -0.33 16 19 C -0.15 -4.05 6.26 22.54 0.14 -3.91 16 20 Br -0.02 -0.60 32.43 -20.37 -0.66 -1.26 16 21 H 0.03 1.46 6.91 -2.39 -0.02 1.45 16 22 H 0.06 3.41 6.07 -2.39 -0.01 3.40 16 23 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 24 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 25 H 0.06 3.41 6.07 -2.39 -0.01 3.40 16 26 H 0.03 1.46 6.91 -2.39 -0.02 1.44 16 27 H 0.26 13.79 8.31 -92.71 -0.77 13.02 16 28 H 0.06 2.97 8.14 -2.39 -0.02 2.95 16 29 H 0.06 2.97 8.14 -2.39 -0.02 2.95 16 30 H 0.19 2.82 8.06 -2.91 -0.02 2.79 16 31 H 0.19 1.16 8.06 -2.91 -0.02 1.14 16 32 H 0.18 2.04 8.06 -2.91 -0.02 2.01 16 Total: -1.00 -62.19 296.80 4.07 -58.12 By element: Atomic # 1 Polarization: 2.96 SS G_CDS: 1.12 Total: 4.08 kcal Atomic # 6 Polarization: -38.71 SS G_CDS: 4.19 Total: -34.51 kcal Atomic # 7 Polarization: -66.64 SS G_CDS: -1.61 Total: -68.25 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.23 kcal Atomic # 16 Polarization: -2.41 SS G_CDS: -1.00 Total: -3.41 kcal Atomic # 35 Polarization: -0.60 SS G_CDS: -0.66 Total: -1.26 kcal Total: -62.19 4.07 -58.12 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568270698.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.878 kcal (2) G-P(sol) polarization free energy of solvation -62.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.117 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds