Wall clock time and date at job start Tue Mar 31 2020 10:28:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38134 * 120.08503 * 2 1 4 4 F 1.35103 * 119.95347 * 0.02562 * 3 2 1 5 5 C 1.38678 * 120.09262 * 180.30136 * 3 2 1 6 6 Br 1.89101 * 119.87231 * 179.71925 * 5 3 2 7 7 C 1.38468 * 120.25891 * 359.44606 * 5 3 2 8 8 C 1.37879 * 120.16875 * 0.27859 * 7 5 3 9 9 C 1.39636 * 120.08968 * 179.74897 * 2 1 3 10 10 C 1.47692 * 120.12415 * 359.95253 * 9 2 1 11 11 O 1.21596 * 120.00152 * 303.35981 * 10 9 2 12 12 N 1.34780 * 119.99727 * 123.35784 * 10 9 2 13 13 C 1.46501 * 120.00160 * 3.80698 * 12 10 9 14 14 C 1.36875 * 119.99713 * 183.80516 * 12 10 9 15 15 H 1.07999 * 120.00256 * 351.50304 * 14 12 10 16 16 C 1.39041 * 120.00039 * 171.51117 * 14 12 10 17 17 N 1.31373 * 119.99890 * 7.80875 * 16 14 12 18 18 Si 1.86801 * 120.00218 * 187.80952 * 16 14 12 19 19 H 1.48500 * 109.47061 * 59.99739 * 18 16 14 20 20 H 1.48495 * 109.47368 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.47008 * 299.99773 * 18 16 14 22 22 H 1.09001 * 109.46878 * 273.25822 * 1 2 3 23 23 H 1.08999 * 109.47199 * 33.25792 * 1 2 3 24 24 H 1.08997 * 109.47452 * 153.26345 * 1 2 3 25 25 H 1.07995 * 119.91474 * 180.29427 * 7 5 3 26 26 H 1.08003 * 120.04541 * 180.02562 * 8 7 5 27 27 H 1.08998 * 109.46810 * 356.70388 * 13 12 10 28 28 H 1.09006 * 109.47004 * 116.70046 * 13 12 10 29 29 H 1.08991 * 109.46782 * 236.69869 * 13 12 10 30 30 H 0.96998 * 119.99615 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1994 1.1952 0.0000 4 9 1.5247 2.3657 0.0005 5 6 3.5862 1.1954 -0.0063 6 35 4.5278 2.8353 -0.0143 7 6 4.2842 -0.0005 -0.0011 8 6 3.6039 -1.1997 0.0047 9 6 2.2071 -1.2082 0.0053 10 6 1.4734 -2.4900 0.0120 11 8 0.6694 -2.7258 0.8932 12 7 1.6950 -3.3983 -0.9588 13 6 2.7228 -3.1506 -1.9730 14 6 0.9597 -4.5522 -0.9971 15 1 0.3011 -4.8002 -0.1780 16 6 1.0609 -5.4051 -2.0905 17 7 1.9706 -5.1857 -3.0127 18 14 -0.0965 -6.8628 -2.2484 19 1 -1.4991 -6.3778 -2.3002 20 1 0.2149 -7.6096 -3.4935 21 1 0.0743 -7.7594 -1.0770 22 1 -0.3633 0.0584 1.0260 23 1 -0.3633 0.8593 -0.5636 24 1 -0.3634 -0.9177 -0.4623 25 1 5.3641 0.0062 -0.0012 26 1 4.1503 -2.1313 0.0091 27 1 3.1584 -2.1640 -1.8154 28 1 3.5020 -3.9087 -1.8932 29 1 2.2728 -3.1951 -2.9646 30 1 2.0409 -5.7805 -3.7756 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597012262.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:28:54 Heat of formation + Delta-G solvation = -49.890700 kcal Electronic energy + Delta-G solvation = -18439.757726 eV Core-core repulsion = 15195.999032 eV Total energy + Delta-G solvation = -3243.758694 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 315.001 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -50.12113 -41.29971 -39.21072 -36.83687 -34.33822 -33.84693 -32.68633 -30.64428 -28.53822 -28.11996 -26.52434 -24.22418 -23.04507 -21.19840 -19.18126 -18.71346 -17.89266 -17.42837 -16.95376 -16.78766 -16.34960 -15.97139 -15.71016 -14.84427 -14.52222 -14.44097 -14.31389 -13.99740 -13.63616 -13.49171 -13.28139 -12.86079 -12.76721 -12.66586 -12.53199 -12.37826 -12.14508 -11.69591 -11.39953 -11.05068 -10.54902 -9.98266 -9.86526 -9.73679 -8.31682 -5.96101 -0.42728 -0.04873 0.34890 1.36963 1.41771 1.51812 1.81692 2.17563 2.34006 2.76499 3.06203 3.08739 3.52616 3.68337 3.82745 3.96858 4.21748 4.47482 4.57956 4.58783 4.73019 4.77775 4.86365 5.07482 5.12788 5.23414 5.38912 5.48761 5.52539 5.96432 6.39241 7.06895 7.35418 7.90140 8.57939 Molecular weight = 315.00amu Principal moments of inertia in cm(-1) A = 0.032402 B = 0.003889 C = 0.003641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.935298 B = 7197.349233 C = 7689.210149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.091 4.091 3 C 0.117 3.883 4 F -0.123 7.123 5 C -0.125 4.125 6 Br -0.014 7.014 7 C -0.056 4.056 8 C -0.095 4.095 9 C -0.066 4.066 10 C 0.461 3.539 11 O -0.627 6.627 12 N -0.439 5.439 13 C 0.112 3.888 14 C -0.343 4.343 15 H 0.082 0.918 16 C 0.002 3.998 17 N -0.885 5.885 18 Si 0.994 3.006 19 H -0.274 1.274 20 H -0.267 1.267 21 H -0.270 1.270 22 H 0.079 0.921 23 H 0.088 0.912 24 H 0.052 0.948 25 H 0.182 0.818 26 H 0.151 0.849 27 H 0.063 0.937 28 H 0.054 0.946 29 H 0.069 0.931 30 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.184 13.891 1.047 16.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.094 4.094 3 C 0.095 3.905 4 F -0.101 7.101 5 C -0.205 4.205 6 Br 0.072 6.928 7 C -0.075 4.075 8 C -0.115 4.115 9 C -0.070 4.070 10 C 0.250 3.750 11 O -0.517 6.517 12 N -0.155 5.155 13 C -0.031 4.031 14 C -0.470 4.470 15 H 0.100 0.900 16 C -0.200 4.200 17 N -0.524 5.524 18 Si 0.817 3.183 19 H -0.199 1.199 20 H -0.191 1.191 21 H -0.195 1.195 22 H 0.097 0.903 23 H 0.107 0.893 24 H 0.071 0.929 25 H 0.199 0.801 26 H 0.169 0.831 27 H 0.081 0.919 28 H 0.072 0.928 29 H 0.087 0.913 30 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 8.217 14.304 1.218 16.541 hybrid contribution -0.987 -1.088 -0.110 1.473 sum 7.230 13.216 1.108 15.105 Atomic orbital electron populations 1.20657 0.89313 1.02875 1.03325 1.19912 0.97779 0.90326 1.01400 1.16933 0.88700 0.80919 1.03926 1.91513 1.80111 1.44823 1.93695 1.22118 0.92153 0.95057 1.11206 1.96723 1.73676 1.24810 1.97634 1.21203 1.01957 0.88208 0.96146 1.21539 0.91725 0.99871 0.98370 1.19909 0.94861 0.92489 0.99769 1.18171 0.86870 0.84973 0.84945 1.90593 1.41279 1.80116 1.39665 1.43867 1.31643 1.15983 1.23971 1.22014 0.90480 0.98403 0.92173 1.19762 1.22847 0.98663 1.05766 0.89992 1.26116 0.98137 1.01458 0.94297 1.70213 1.31812 1.38672 1.11705 0.84986 0.78053 0.77080 0.78203 1.19924 1.19103 1.19513 0.90253 0.89346 0.92854 0.80121 0.83086 0.91854 0.92776 0.91260 0.91371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.69 9.05 71.24 0.64 -3.04 16 2 C -0.09 -3.24 5.92 -19.55 -0.12 -3.35 16 3 C 0.12 3.55 7.20 22.35 0.16 3.71 16 4 F -0.12 -3.60 15.98 44.97 0.72 -2.88 16 5 C -0.12 -3.26 6.24 22.43 0.14 -3.12 16 6 Br -0.01 -0.30 33.26 -20.37 -0.68 -0.98 16 7 C -0.06 -1.34 9.76 22.24 0.22 -1.12 16 8 C -0.10 -2.88 7.44 22.53 0.17 -2.72 16 9 C -0.07 -2.55 4.79 -20.09 -0.10 -2.65 16 10 C 0.46 22.58 5.94 86.74 0.52 23.10 16 11 O -0.63 -35.31 15.77 -4.02 -0.06 -35.38 16 12 N -0.44 -22.28 3.02 -662.37 -2.00 -24.28 16 13 C 0.11 4.87 8.18 127.77 1.04 5.91 16 14 C -0.34 -18.89 9.54 84.10 0.80 -18.09 16 15 H 0.08 4.82 7.19 -2.91 -0.02 4.80 16 16 C 0.00 0.12 5.45 84.95 0.46 0.58 16 17 N -0.89 -43.96 9.49 21.68 0.21 -43.76 16 18 Si 0.99 40.75 29.56 68.60 2.03 42.78 16 19 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 20 H -0.27 -10.20 7.11 99.48 0.71 -9.50 16 21 H -0.27 -10.97 7.11 99.48 0.71 -10.27 16 22 H 0.08 2.72 8.14 -2.39 -0.02 2.70 16 23 H 0.09 2.59 7.74 -2.39 -0.02 2.57 16 24 H 0.05 2.18 6.75 -2.39 -0.02 2.16 16 25 H 0.18 2.95 8.06 -2.91 -0.02 2.93 16 26 H 0.15 4.28 7.55 -2.91 -0.02 4.26 16 27 H 0.06 2.31 4.61 -2.39 -0.01 2.29 16 28 H 0.05 2.40 7.55 -2.38 -0.02 2.38 16 29 H 0.07 3.26 6.49 -2.39 -0.02 3.25 16 30 H 0.28 12.81 8.31 -92.71 -0.77 12.04 16 Total: -1.00 -61.59 280.30 5.34 -56.25 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: 1.19 Total: 9.03 kcal Atomic # 6 Polarization: -4.72 SS G_CDS: 3.94 Total: -0.78 kcal Atomic # 7 Polarization: -66.24 SS G_CDS: -1.79 Total: -68.04 kcal Atomic # 8 Polarization: -35.31 SS G_CDS: -0.06 Total: -35.38 kcal Atomic # 9 Polarization: -3.60 SS G_CDS: 0.72 Total: -2.88 kcal Atomic # 14 Polarization: 40.75 SS G_CDS: 2.03 Total: 42.78 kcal Atomic # 35 Polarization: -0.30 SS G_CDS: -0.68 Total: -0.98 kcal Total: -61.59 5.34 -56.25 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597012262.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.354 kcal (2) G-P(sol) polarization free energy of solvation -61.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds