Wall clock time and date at job start Tue Mar 31 2020 10:43:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46498 * 119.99531 * 2 1 4 4 C 1.50707 * 109.47455 * 269.99906 * 3 2 1 5 5 C 1.38229 * 120.00350 * 260.30921 * 4 3 2 6 6 C 1.38200 * 120.03265 * 180.27657 * 5 4 3 7 7 C 1.38363 * 120.04462 * 359.71155 * 6 5 4 8 8 Br 1.89099 * 120.00011 * 180.02562 * 7 6 5 9 9 C 1.38267 * 120.00253 * 359.97438 * 7 6 5 10 10 C 1.38446 * 120.00106 * 80.00049 * 4 3 2 11 11 F 1.35104 * 120.01964 * 0.02562 * 10 4 3 12 12 C 1.34777 * 120.00365 * 179.97438 * 2 1 3 13 13 O 1.21690 * 119.99999 * 179.97438 * 12 2 1 14 14 C 1.46371 * 119.99657 * 359.97438 * 12 2 1 15 15 H 1.08001 * 120.00722 * 0.02562 * 14 12 2 16 16 C 1.40058 * 119.99827 * 179.97438 * 14 12 2 17 17 N 1.30667 * 119.99847 * 359.97438 * 16 14 12 18 18 Si 1.86802 * 120.00020 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47164 * 359.97438 * 18 16 14 20 20 H 1.48494 * 109.47102 * 120.00080 * 18 16 14 21 21 H 1.48501 * 109.46945 * 239.99894 * 18 16 14 22 22 H 1.09000 * 109.47524 * 90.00105 * 1 2 3 23 23 H 1.09007 * 109.47000 * 210.00128 * 1 2 3 24 24 H 1.08998 * 109.47713 * 329.99514 * 1 2 3 25 25 H 1.09003 * 109.47204 * 150.00076 * 3 2 1 26 26 H 1.08993 * 109.47684 * 30.00104 * 3 2 1 27 27 H 1.07995 * 119.98223 * 359.96507 * 5 4 3 28 28 H 1.08002 * 119.97941 * 179.69676 * 6 5 4 29 29 H 1.07996 * 120.01999 * 180.02562 * 9 7 6 30 30 H 0.97001 * 120.00031 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1973 1.2688 0.0000 4 6 2.4485 1.7039 -1.4209 5 6 3.6807 1.4781 -2.0053 6 6 3.9135 1.8820 -3.3063 7 6 2.9118 2.5075 -4.0273 8 35 3.2316 3.0590 -5.8076 9 6 1.6767 2.7283 -3.4465 10 6 1.4432 2.3241 -2.1429 11 9 0.2369 2.5399 -1.5740 12 6 2.1389 -1.1672 0.0005 13 8 3.3558 -1.1671 0.0001 14 6 1.4071 -2.4348 0.0017 15 1 0.3271 -2.4349 0.0017 16 6 2.1074 -3.6477 0.0017 17 7 3.4141 -3.6476 0.0001 18 14 1.1734 -5.2655 0.0024 19 1 -0.2866 -4.9942 0.0035 20 1 1.5318 -6.0444 -1.2100 21 1 1.5327 -6.0439 1.2149 22 1 -0.3634 0.0000 -1.0276 23 1 -0.3633 -0.8900 0.5139 24 1 -0.3634 0.8899 0.5139 25 1 3.1498 1.1385 0.5138 26 1 1.6083 2.0284 0.5138 27 1 4.4633 0.9903 -1.4433 28 1 4.8781 1.7095 -3.7605 29 1 0.8945 3.2161 -4.0091 30 1 3.8991 -4.4876 -0.0002 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601702248.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:43:08 Heat of formation + Delta-G solvation = -51.904633 kcal Electronic energy + Delta-G solvation = -18320.258967 eV Core-core repulsion = 15076.412942 eV Total energy + Delta-G solvation = -3243.846025 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 315.001 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -48.73279 -39.12243 -37.51424 -34.22867 -32.49091 -32.35168 -30.56750 -29.97127 -26.96048 -25.87615 -24.34752 -22.76097 -21.45732 -19.25681 -17.25851 -16.69864 -16.17072 -15.83803 -15.66763 -15.44363 -14.38831 -14.19556 -14.11326 -13.79130 -13.20814 -12.82851 -12.66428 -12.45557 -11.92346 -11.56782 -11.43070 -11.22527 -11.08600 -11.03275 -10.83913 -10.64036 -10.37825 -10.28381 -10.15290 -8.90982 -8.82354 -8.51754 -7.63319 -7.35279 -6.24928 -4.69776 1.06358 1.27461 1.53345 3.09759 3.18588 3.22551 3.54821 4.07049 4.40961 4.48568 4.64639 4.79056 5.03292 5.05937 5.35222 5.64661 5.67143 5.77486 5.98707 6.04551 6.10070 6.23909 6.32544 6.46731 6.55461 6.60998 6.91456 7.40381 7.51382 8.06021 8.27903 8.97569 9.33336 10.50476 10.69194 Molecular weight = 315.00amu Principal moments of inertia in cm(-1) A = 0.019732 B = 0.004042 C = 0.003721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.682830 B = 6925.475890 C = 7522.070462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.641 5.641 3 C 0.160 3.840 4 C -0.102 4.102 5 C -0.057 4.057 6 C -0.104 4.104 7 C -0.071 4.071 8 Br -0.053 7.053 9 C -0.135 4.135 10 C 0.112 3.888 11 F -0.133 7.133 12 C 0.556 3.444 13 O -0.574 6.574 14 C -0.541 4.541 15 H 0.073 0.927 16 C 0.088 3.912 17 N -0.766 5.766 18 Si 0.906 3.094 19 H -0.263 1.263 20 H -0.276 1.276 21 H -0.276 1.276 22 H 0.030 0.970 23 H 0.073 0.927 24 H 0.043 0.957 25 H 0.090 0.910 26 H 0.068 0.932 27 H 0.149 0.851 28 H 0.136 0.864 29 H 0.139 0.861 30 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.981 13.207 -8.351 15.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.379 5.379 3 C 0.036 3.964 4 C -0.105 4.105 5 C -0.077 4.077 6 C -0.124 4.124 7 C -0.151 4.151 8 Br 0.032 6.968 9 C -0.156 4.156 10 C 0.091 3.909 11 F -0.111 7.111 12 C 0.363 3.637 13 O -0.457 6.457 14 C -0.578 4.578 15 H 0.091 0.909 16 C -0.132 4.132 17 N -0.394 5.394 18 Si 0.730 3.270 19 H -0.187 1.187 20 H -0.201 1.201 21 H -0.201 1.201 22 H 0.048 0.952 23 H 0.091 0.909 24 H 0.062 0.938 25 H 0.108 0.892 26 H 0.087 0.913 27 H 0.166 0.834 28 H 0.154 0.846 29 H 0.157 0.843 30 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.079 13.292 -8.969 16.071 hybrid contribution -0.932 -0.899 0.276 1.324 sum -2.011 12.393 -8.693 15.271 Atomic orbital electron populations 1.21441 0.81793 1.01170 0.99742 1.48071 1.05299 1.04525 1.79978 1.19965 0.99308 0.87535 0.89605 1.20907 0.92983 0.96840 0.99818 1.21172 0.96913 0.95610 0.93994 1.21172 0.98736 0.97938 0.94520 1.21392 0.96476 1.05237 0.91969 1.96673 1.96336 1.89821 1.13925 1.20886 0.97127 1.03390 0.94200 1.17382 0.81356 1.00659 0.91518 1.91486 1.42123 1.92806 1.84699 1.18287 0.87030 0.82128 0.76272 1.90572 1.13874 1.86115 1.55143 1.21047 0.93789 0.89133 1.53811 0.90905 1.25727 0.94623 1.00307 0.92533 1.70016 1.07042 1.27236 1.35151 0.86342 0.80584 0.81780 0.78267 1.18712 1.20132 1.20108 0.95171 0.90857 0.93823 0.89219 0.91326 0.83363 0.84629 0.84318 0.92134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.94 9.34 59.84 0.56 2.50 16 2 N -0.64 -14.28 2.86 -184.63 -0.53 -14.81 16 3 C 0.16 3.03 5.30 -5.19 -0.03 3.00 16 4 C -0.10 -1.80 5.47 -104.55 -0.57 -2.37 16 5 C -0.06 -0.97 9.67 -39.60 -0.38 -1.36 16 6 C -0.10 -1.53 9.79 -39.55 -0.39 -1.92 16 7 C -0.07 -1.01 6.22 -39.52 -0.25 -1.25 16 8 Br -0.05 -0.63 33.70 -68.01 -2.29 -2.92 16 9 C -0.14 -1.95 9.77 -39.49 -0.39 -2.33 16 10 C 0.11 1.81 7.25 -39.42 -0.29 1.52 16 11 F -0.13 -2.11 15.80 2.25 0.04 -2.08 16 12 C 0.56 15.30 7.61 -12.99 -0.10 15.20 16 13 O -0.57 -17.45 14.60 5.20 0.08 -17.38 16 14 C -0.54 -14.93 8.74 -35.63 -0.31 -15.24 16 15 H 0.07 1.86 6.00 -52.49 -0.31 1.54 16 16 C 0.09 2.40 5.50 -17.37 -0.10 2.31 16 17 N -0.77 -22.33 11.83 55.55 0.66 -21.67 16 18 Si 0.91 19.83 29.56 -169.99 -5.02 14.80 16 19 H -0.26 -5.57 7.11 56.52 0.40 -5.17 16 20 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 21 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 22 H 0.03 0.56 8.13 -51.93 -0.42 0.14 16 23 H 0.07 1.41 6.09 -51.93 -0.32 1.10 16 24 H 0.04 0.70 7.89 -51.93 -0.41 0.29 16 25 H 0.09 1.78 7.28 -51.93 -0.38 1.41 16 26 H 0.07 1.11 7.70 -51.93 -0.40 0.71 16 27 H 0.15 2.64 8.04 -52.49 -0.42 2.22 16 28 H 0.14 1.73 8.06 -52.49 -0.42 1.31 16 29 H 0.14 1.71 8.06 -52.49 -0.42 1.28 16 30 H 0.27 7.09 8.29 -40.82 -0.34 6.75 16 LS Contribution 289.84 15.07 4.37 4.37 Total: -1.00 -31.54 289.84 -7.58 -39.12 By element: Atomic # 1 Polarization: 3.15 SS G_CDS: -2.64 Total: 0.51 kcal Atomic # 6 Polarization: 2.29 SS G_CDS: -2.23 Total: 0.05 kcal Atomic # 7 Polarization: -36.61 SS G_CDS: 0.13 Total: -36.48 kcal Atomic # 8 Polarization: -17.45 SS G_CDS: 0.08 Total: -17.38 kcal Atomic # 9 Polarization: -2.11 SS G_CDS: 0.04 Total: -2.08 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -5.02 Total: 14.80 kcal Atomic # 35 Polarization: -0.63 SS G_CDS: -2.29 Total: -2.92 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -31.54 -7.58 -39.12 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601702248.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.781 kcal (2) G-P(sol) polarization free energy of solvation -31.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds