Wall clock time and date at job start Tue Mar 31 2020 10:43:07
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46496 * 1
3 3 C 1.46498 * 119.99531 * 2 1
4 4 C 1.50707 * 109.47455 * 269.99906 * 3 2 1
5 5 C 1.38229 * 120.00350 * 260.30921 * 4 3 2
6 6 C 1.38200 * 120.03265 * 180.27657 * 5 4 3
7 7 C 1.38363 * 120.04462 * 359.71155 * 6 5 4
8 8 Br 1.89099 * 120.00011 * 180.02562 * 7 6 5
9 9 C 1.38267 * 120.00253 * 359.97438 * 7 6 5
10 10 C 1.38446 * 120.00106 * 80.00049 * 4 3 2
11 11 F 1.35104 * 120.01964 * 0.02562 * 10 4 3
12 12 C 1.34777 * 120.00365 * 179.97438 * 2 1 3
13 13 O 1.21690 * 119.99999 * 179.97438 * 12 2 1
14 14 C 1.46371 * 119.99657 * 359.97438 * 12 2 1
15 15 H 1.08001 * 120.00722 * 0.02562 * 14 12 2
16 16 C 1.40058 * 119.99827 * 179.97438 * 14 12 2
17 17 N 1.30667 * 119.99847 * 359.97438 * 16 14 12
18 18 Si 1.86802 * 120.00020 * 180.02562 * 16 14 12
19 19 H 1.48503 * 109.47164 * 359.97438 * 18 16 14
20 20 H 1.48494 * 109.47102 * 120.00080 * 18 16 14
21 21 H 1.48501 * 109.46945 * 239.99894 * 18 16 14
22 22 H 1.09000 * 109.47524 * 90.00105 * 1 2 3
23 23 H 1.09007 * 109.47000 * 210.00128 * 1 2 3
24 24 H 1.08998 * 109.47713 * 329.99514 * 1 2 3
25 25 H 1.09003 * 109.47204 * 150.00076 * 3 2 1
26 26 H 1.08993 * 109.47684 * 30.00104 * 3 2 1
27 27 H 1.07995 * 119.98223 * 359.96507 * 5 4 3
28 28 H 1.08002 * 119.97941 * 179.69676 * 6 5 4
29 29 H 1.07996 * 120.01999 * 180.02562 * 9 7 6
30 30 H 0.97001 * 120.00031 * 180.02562 * 17 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1973 1.2688 0.0000
4 6 2.4485 1.7039 -1.4209
5 6 3.6807 1.4781 -2.0053
6 6 3.9135 1.8820 -3.3063
7 6 2.9118 2.5075 -4.0273
8 35 3.2316 3.0590 -5.8076
9 6 1.6767 2.7283 -3.4465
10 6 1.4432 2.3241 -2.1429
11 9 0.2369 2.5399 -1.5740
12 6 2.1389 -1.1672 0.0005
13 8 3.3558 -1.1671 0.0001
14 6 1.4071 -2.4348 0.0017
15 1 0.3271 -2.4349 0.0017
16 6 2.1074 -3.6477 0.0017
17 7 3.4141 -3.6476 0.0001
18 14 1.1734 -5.2655 0.0024
19 1 -0.2866 -4.9942 0.0035
20 1 1.5318 -6.0444 -1.2100
21 1 1.5327 -6.0439 1.2149
22 1 -0.3634 0.0000 -1.0276
23 1 -0.3633 -0.8900 0.5139
24 1 -0.3634 0.8899 0.5139
25 1 3.1498 1.1385 0.5138
26 1 1.6083 2.0284 0.5138
27 1 4.4633 0.9903 -1.4433
28 1 4.8781 1.7095 -3.7605
29 1 0.8945 3.2161 -4.0091
30 1 3.8991 -4.4876 -0.0002
RHF calculation, no. of doubly occupied orbitals= 46
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000601702248.mol2 30
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:43:07
Heat of formation + Delta-G solvation = -70.352169 kcal
Electronic energy + Delta-G solvation = -18321.058912 eV
Core-core repulsion = 15076.412942 eV
Total energy + Delta-G solvation = -3244.645970 eV
No. of doubly occupied orbitals = 46
Molecular weight
(most abundant/longest-lived isotopes) = 315.001 amu
Computer time = 0.29 seconds
Orbital eigenvalues (eV)
-49.98105 -40.48612 -39.30428 -36.03457 -34.57795 -33.68369 -31.77666 -31.25291
-28.71571 -27.58413 -26.01111 -24.00511 -22.86063 -21.07982 -18.59614 -18.37545
-17.82998 -17.32765 -17.11763 -16.92283 -16.09847 -15.86108 -15.59598 -15.13341
-14.46350 -14.37671 -14.09995 -13.91339 -13.46220 -13.29612 -13.08610 -13.05242
-12.75997 -12.55975 -12.21667 -12.09453 -11.98318 -11.77463 -11.40284 -10.93553
-10.06495 -9.88840 -9.58931 -9.15513 -8.28162 -6.83103 -0.18575 0.04478
0.41375 1.39109 1.40331 1.56863 2.20152 2.30956 2.46980 2.98749
3.16422 3.53474 3.57987 3.81255 3.87629 4.07896 4.35087 4.44349
4.55058 4.68916 4.75549 4.88815 4.92030 5.00366 5.04816 5.29352
5.37838 5.64934 5.73970 6.12314 6.35677 6.89228 7.38373 8.46993
8.67334
Molecular weight = 315.00amu
Principal moments of inertia in cm(-1)
A = 0.019732 B = 0.004042 C = 0.003721
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1418.682830 B = 6925.475890 C = 7522.070462
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.103 3.897
2 N -0.644 5.644
3 C 0.161 3.839
4 C -0.121 4.121
5 C -0.074 4.074
6 C -0.101 4.101
7 C -0.072 4.072
8 Br -0.024 7.024
9 C -0.127 4.127
10 C 0.107 3.893
11 F -0.131 7.131
12 C 0.542 3.458
13 O -0.617 6.617
14 C -0.569 4.569
15 H 0.089 0.911
16 C 0.033 3.967
17 N -0.817 5.817
18 Si 0.990 3.010
19 H -0.248 1.248
20 H -0.270 1.270
21 H -0.268 1.268
22 H 0.033 0.967
23 H 0.067 0.933
24 H 0.076 0.924
25 H 0.068 0.932
26 H 0.097 0.903
27 H 0.128 0.872
28 H 0.154 0.846
29 H 0.165 0.835
30 H 0.273 0.727
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.824 13.594 -9.612 17.082
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.040 4.040
2 N -0.379 5.379
3 C 0.037 3.963
4 C -0.124 4.124
5 C -0.094 4.094
6 C -0.120 4.120
7 C -0.152 4.152
8 Br 0.062 6.938
9 C -0.147 4.147
10 C 0.087 3.913
11 F -0.109 7.109
12 C 0.348 3.652
13 O -0.504 6.504
14 C -0.606 4.606
15 H 0.107 0.893
16 C -0.183 4.183
17 N -0.447 5.447
18 Si 0.810 3.190
19 H -0.171 1.171
20 H -0.195 1.195
21 H -0.193 1.193
22 H 0.052 0.948
23 H 0.085 0.915
24 H 0.094 0.906
25 H 0.086 0.914
26 H 0.115 0.885
27 H 0.146 0.854
28 H 0.171 0.829
29 H 0.182 0.818
30 H 0.083 0.917
Dipole moment (debyes) X Y Z Total
from point charges -2.961 13.732 -10.232 17.379
hybrid contribution -0.338 -0.879 0.597 1.115
sum -3.299 12.852 -9.635 16.398
Atomic orbital electron populations
1.21552 0.79635 1.02492 1.00319 1.47901 1.06744 1.04442 1.78854
1.20041 0.98476 0.86722 0.91064 1.20755 0.93918 0.98487 0.99247
1.21092 0.96613 0.96586 0.95125 1.21336 0.99853 0.97259 0.93597
1.21591 0.96097 1.04212 0.93264 1.96708 1.96263 1.89425 1.11438
1.21159 0.97764 1.02357 0.93456 1.17393 0.81026 1.00813 0.92103
1.91483 1.41832 1.92796 1.84799 1.18583 0.86778 0.83845 0.76028
1.90529 1.15638 1.87283 1.56908 1.21553 0.94793 0.89969 1.54260
0.89337 1.26885 0.95472 1.04611 0.91290 1.70169 1.09300 1.28742
1.36492 0.85082 0.79505 0.75957 0.78500 1.17106 1.19543 1.19309
0.94835 0.91460 0.90555 0.91381 0.88506 0.85431 0.82851 0.81760
0.91664
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.10 3.77 9.34 127.77 1.19 4.96 16
2 N -0.64 -28.88 2.86 -856.27 -2.45 -31.33 16
3 C 0.16 6.16 5.30 85.64 0.45 6.61 16
4 C -0.12 -4.28 5.47 -19.81 -0.11 -4.39 16
5 C -0.07 -2.60 9.67 22.26 0.22 -2.39 16
6 C -0.10 -2.91 9.79 22.29 0.22 -2.69 16
7 C -0.07 -1.89 6.22 22.31 0.14 -1.75 16
8 Br -0.02 -0.51 33.70 -20.37 -0.69 -1.20 16
9 C -0.13 -3.36 9.77 22.33 0.22 -3.14 16
10 C 0.11 3.32 7.25 22.37 0.16 3.48 16
11 F -0.13 -3.88 15.80 44.97 0.71 -3.17 16
12 C 0.54 30.64 7.61 86.36 0.66 31.30 16
13 O -0.62 -39.33 14.60 -4.32 -0.06 -39.39 16
14 C -0.57 -31.77 8.74 24.83 0.22 -31.55 16
15 H 0.09 4.48 6.00 -2.91 -0.02 4.46 16
16 C 0.03 1.80 5.50 85.31 0.47 2.27 16
17 N -0.82 -49.04 11.83 21.84 0.26 -48.78 16
18 Si 0.99 40.58 29.56 68.60 2.03 42.61 16
19 H -0.25 -9.44 7.11 99.48 0.71 -8.73 16
20 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16
21 H -0.27 -10.58 7.11 99.48 0.71 -9.88 16
22 H 0.03 1.20 8.13 -2.39 -0.02 1.18 16
23 H 0.07 2.52 6.09 -2.38 -0.01 2.51 16
24 H 0.08 2.27 7.89 -2.39 -0.02 2.25 16
25 H 0.07 2.87 7.28 -2.39 -0.02 2.85 16
26 H 0.10 3.07 7.70 -2.39 -0.02 3.05 16
27 H 0.13 4.92 8.04 -2.91 -0.02 4.89 16
28 H 0.15 3.77 8.06 -2.91 -0.02 3.75 16
29 H 0.16 3.47 8.06 -2.91 -0.02 3.45 16
30 H 0.27 14.87 8.29 -92.71 -0.77 14.10 16
Total: -1.00 -69.53 289.84 4.81 -64.72
By element:
Atomic # 1 Polarization: 12.65 SS G_CDS: 1.18 Total: 13.82 kcal
Atomic # 6 Polarization: -1.13 SS G_CDS: 3.83 Total: 2.71 kcal
Atomic # 7 Polarization: -77.92 SS G_CDS: -2.19 Total: -80.11 kcal
Atomic # 8 Polarization: -39.33 SS G_CDS: -0.06 Total: -39.39 kcal
Atomic # 9 Polarization: -3.88 SS G_CDS: 0.71 Total: -3.17 kcal
Atomic # 14 Polarization: 40.58 SS G_CDS: 2.03 Total: 42.61 kcal
Atomic # 35 Polarization: -0.51 SS G_CDS: -0.69 Total: -1.20 kcal
Total: -69.53 4.81 -64.72 kcal
The number of atoms in the molecule is 30
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000601702248.mol2 30
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -5.634 kcal
(2) G-P(sol) polarization free energy of solvation -69.529 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.164 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.811 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.718 kcal
(6) G-S(sol) free energy of system = (1) + (5) -70.352 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.29 seconds