Wall clock time and date at job start Tue Mar 31 2020 10:43:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46498 * 119.99531 * 2 1 4 4 C 1.50707 * 109.47455 * 269.99906 * 3 2 1 5 5 C 1.38229 * 120.00350 * 260.30921 * 4 3 2 6 6 C 1.38200 * 120.03265 * 180.27657 * 5 4 3 7 7 C 1.38363 * 120.04462 * 359.71155 * 6 5 4 8 8 Br 1.89099 * 120.00011 * 180.02562 * 7 6 5 9 9 C 1.38267 * 120.00253 * 359.97438 * 7 6 5 10 10 C 1.38446 * 120.00106 * 80.00049 * 4 3 2 11 11 F 1.35104 * 120.01964 * 0.02562 * 10 4 3 12 12 C 1.34777 * 120.00365 * 179.97438 * 2 1 3 13 13 O 1.21690 * 119.99999 * 179.97438 * 12 2 1 14 14 C 1.46371 * 119.99657 * 359.97438 * 12 2 1 15 15 H 1.08001 * 120.00722 * 0.02562 * 14 12 2 16 16 C 1.40058 * 119.99827 * 179.97438 * 14 12 2 17 17 N 1.30667 * 119.99847 * 359.97438 * 16 14 12 18 18 Si 1.86802 * 120.00020 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47164 * 359.97438 * 18 16 14 20 20 H 1.48494 * 109.47102 * 120.00080 * 18 16 14 21 21 H 1.48501 * 109.46945 * 239.99894 * 18 16 14 22 22 H 1.09000 * 109.47524 * 90.00105 * 1 2 3 23 23 H 1.09007 * 109.47000 * 210.00128 * 1 2 3 24 24 H 1.08998 * 109.47713 * 329.99514 * 1 2 3 25 25 H 1.09003 * 109.47204 * 150.00076 * 3 2 1 26 26 H 1.08993 * 109.47684 * 30.00104 * 3 2 1 27 27 H 1.07995 * 119.98223 * 359.96507 * 5 4 3 28 28 H 1.08002 * 119.97941 * 179.69676 * 6 5 4 29 29 H 1.07996 * 120.01999 * 180.02562 * 9 7 6 30 30 H 0.97001 * 120.00031 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1973 1.2688 0.0000 4 6 2.4485 1.7039 -1.4209 5 6 3.6807 1.4781 -2.0053 6 6 3.9135 1.8820 -3.3063 7 6 2.9118 2.5075 -4.0273 8 35 3.2316 3.0590 -5.8076 9 6 1.6767 2.7283 -3.4465 10 6 1.4432 2.3241 -2.1429 11 9 0.2369 2.5399 -1.5740 12 6 2.1389 -1.1672 0.0005 13 8 3.3558 -1.1671 0.0001 14 6 1.4071 -2.4348 0.0017 15 1 0.3271 -2.4349 0.0017 16 6 2.1074 -3.6477 0.0017 17 7 3.4141 -3.6476 0.0001 18 14 1.1734 -5.2655 0.0024 19 1 -0.2866 -4.9942 0.0035 20 1 1.5318 -6.0444 -1.2100 21 1 1.5327 -6.0439 1.2149 22 1 -0.3634 0.0000 -1.0276 23 1 -0.3633 -0.8900 0.5139 24 1 -0.3634 0.8899 0.5139 25 1 3.1498 1.1385 0.5138 26 1 1.6083 2.0284 0.5138 27 1 4.4633 0.9903 -1.4433 28 1 4.8781 1.7095 -3.7605 29 1 0.8945 3.2161 -4.0091 30 1 3.8991 -4.4876 -0.0002 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601702248.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:43:07 Heat of formation + Delta-G solvation = -70.352169 kcal Electronic energy + Delta-G solvation = -18321.058912 eV Core-core repulsion = 15076.412942 eV Total energy + Delta-G solvation = -3244.645970 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 315.001 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -49.98105 -40.48612 -39.30428 -36.03457 -34.57795 -33.68369 -31.77666 -31.25291 -28.71571 -27.58413 -26.01111 -24.00511 -22.86063 -21.07982 -18.59614 -18.37545 -17.82998 -17.32765 -17.11763 -16.92283 -16.09847 -15.86108 -15.59598 -15.13341 -14.46350 -14.37671 -14.09995 -13.91339 -13.46220 -13.29612 -13.08610 -13.05242 -12.75997 -12.55975 -12.21667 -12.09453 -11.98318 -11.77463 -11.40284 -10.93553 -10.06495 -9.88840 -9.58931 -9.15513 -8.28162 -6.83103 -0.18575 0.04478 0.41375 1.39109 1.40331 1.56863 2.20152 2.30956 2.46980 2.98749 3.16422 3.53474 3.57987 3.81255 3.87629 4.07896 4.35087 4.44349 4.55058 4.68916 4.75549 4.88815 4.92030 5.00366 5.04816 5.29352 5.37838 5.64934 5.73970 6.12314 6.35677 6.89228 7.38373 8.46993 8.67334 Molecular weight = 315.00amu Principal moments of inertia in cm(-1) A = 0.019732 B = 0.004042 C = 0.003721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.682830 B = 6925.475890 C = 7522.070462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.644 5.644 3 C 0.161 3.839 4 C -0.121 4.121 5 C -0.074 4.074 6 C -0.101 4.101 7 C -0.072 4.072 8 Br -0.024 7.024 9 C -0.127 4.127 10 C 0.107 3.893 11 F -0.131 7.131 12 C 0.542 3.458 13 O -0.617 6.617 14 C -0.569 4.569 15 H 0.089 0.911 16 C 0.033 3.967 17 N -0.817 5.817 18 Si 0.990 3.010 19 H -0.248 1.248 20 H -0.270 1.270 21 H -0.268 1.268 22 H 0.033 0.967 23 H 0.067 0.933 24 H 0.076 0.924 25 H 0.068 0.932 26 H 0.097 0.903 27 H 0.128 0.872 28 H 0.154 0.846 29 H 0.165 0.835 30 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.824 13.594 -9.612 17.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.379 5.379 3 C 0.037 3.963 4 C -0.124 4.124 5 C -0.094 4.094 6 C -0.120 4.120 7 C -0.152 4.152 8 Br 0.062 6.938 9 C -0.147 4.147 10 C 0.087 3.913 11 F -0.109 7.109 12 C 0.348 3.652 13 O -0.504 6.504 14 C -0.606 4.606 15 H 0.107 0.893 16 C -0.183 4.183 17 N -0.447 5.447 18 Si 0.810 3.190 19 H -0.171 1.171 20 H -0.195 1.195 21 H -0.193 1.193 22 H 0.052 0.948 23 H 0.085 0.915 24 H 0.094 0.906 25 H 0.086 0.914 26 H 0.115 0.885 27 H 0.146 0.854 28 H 0.171 0.829 29 H 0.182 0.818 30 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.961 13.732 -10.232 17.379 hybrid contribution -0.338 -0.879 0.597 1.115 sum -3.299 12.852 -9.635 16.398 Atomic orbital electron populations 1.21552 0.79635 1.02492 1.00319 1.47901 1.06744 1.04442 1.78854 1.20041 0.98476 0.86722 0.91064 1.20755 0.93918 0.98487 0.99247 1.21092 0.96613 0.96586 0.95125 1.21336 0.99853 0.97259 0.93597 1.21591 0.96097 1.04212 0.93264 1.96708 1.96263 1.89425 1.11438 1.21159 0.97764 1.02357 0.93456 1.17393 0.81026 1.00813 0.92103 1.91483 1.41832 1.92796 1.84799 1.18583 0.86778 0.83845 0.76028 1.90529 1.15638 1.87283 1.56908 1.21553 0.94793 0.89969 1.54260 0.89337 1.26885 0.95472 1.04611 0.91290 1.70169 1.09300 1.28742 1.36492 0.85082 0.79505 0.75957 0.78500 1.17106 1.19543 1.19309 0.94835 0.91460 0.90555 0.91381 0.88506 0.85431 0.82851 0.81760 0.91664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.77 9.34 127.77 1.19 4.96 16 2 N -0.64 -28.88 2.86 -856.27 -2.45 -31.33 16 3 C 0.16 6.16 5.30 85.64 0.45 6.61 16 4 C -0.12 -4.28 5.47 -19.81 -0.11 -4.39 16 5 C -0.07 -2.60 9.67 22.26 0.22 -2.39 16 6 C -0.10 -2.91 9.79 22.29 0.22 -2.69 16 7 C -0.07 -1.89 6.22 22.31 0.14 -1.75 16 8 Br -0.02 -0.51 33.70 -20.37 -0.69 -1.20 16 9 C -0.13 -3.36 9.77 22.33 0.22 -3.14 16 10 C 0.11 3.32 7.25 22.37 0.16 3.48 16 11 F -0.13 -3.88 15.80 44.97 0.71 -3.17 16 12 C 0.54 30.64 7.61 86.36 0.66 31.30 16 13 O -0.62 -39.33 14.60 -4.32 -0.06 -39.39 16 14 C -0.57 -31.77 8.74 24.83 0.22 -31.55 16 15 H 0.09 4.48 6.00 -2.91 -0.02 4.46 16 16 C 0.03 1.80 5.50 85.31 0.47 2.27 16 17 N -0.82 -49.04 11.83 21.84 0.26 -48.78 16 18 Si 0.99 40.58 29.56 68.60 2.03 42.61 16 19 H -0.25 -9.44 7.11 99.48 0.71 -8.73 16 20 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 21 H -0.27 -10.58 7.11 99.48 0.71 -9.88 16 22 H 0.03 1.20 8.13 -2.39 -0.02 1.18 16 23 H 0.07 2.52 6.09 -2.38 -0.01 2.51 16 24 H 0.08 2.27 7.89 -2.39 -0.02 2.25 16 25 H 0.07 2.87 7.28 -2.39 -0.02 2.85 16 26 H 0.10 3.07 7.70 -2.39 -0.02 3.05 16 27 H 0.13 4.92 8.04 -2.91 -0.02 4.89 16 28 H 0.15 3.77 8.06 -2.91 -0.02 3.75 16 29 H 0.16 3.47 8.06 -2.91 -0.02 3.45 16 30 H 0.27 14.87 8.29 -92.71 -0.77 14.10 16 Total: -1.00 -69.53 289.84 4.81 -64.72 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: 1.18 Total: 13.82 kcal Atomic # 6 Polarization: -1.13 SS G_CDS: 3.83 Total: 2.71 kcal Atomic # 7 Polarization: -77.92 SS G_CDS: -2.19 Total: -80.11 kcal Atomic # 8 Polarization: -39.33 SS G_CDS: -0.06 Total: -39.39 kcal Atomic # 9 Polarization: -3.88 SS G_CDS: 0.71 Total: -3.17 kcal Atomic # 14 Polarization: 40.58 SS G_CDS: 2.03 Total: 42.61 kcal Atomic # 35 Polarization: -0.51 SS G_CDS: -0.69 Total: -1.20 kcal Total: -69.53 4.81 -64.72 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601702248.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.634 kcal (2) G-P(sol) polarization free energy of solvation -69.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds