Wall clock time and date at job start Tue Mar 31 2020 10:47:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86806 * 120.00375 * 2 1 4 4 H 1.48503 * 109.46899 * 270.00019 * 3 2 1 5 5 H 1.48502 * 109.46808 * 29.99934 * 3 2 1 6 6 H 1.48495 * 109.47437 * 149.99852 * 3 2 1 7 7 C 1.37877 * 120.00004 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00181 * 173.70412 * 7 2 1 9 9 C 1.50707 * 119.99858 * 353.69946 * 7 2 1 10 10 C 1.53002 * 115.54598 * 86.10900 * 9 7 2 11 11 O 1.45201 * 109.47093 * 65.10919 * 10 9 7 12 12 C 1.34685 * 116.99760 * 179.97438 * 11 10 9 13 13 O 1.21446 * 120.00039 * 0.02562 * 12 11 10 14 14 C 1.47890 * 120.00000 * 179.97438 * 12 11 10 15 15 C 1.40024 * 120.94588 * 89.72300 * 14 12 11 16 16 Cl 1.73597 * 120.51399 * 359.97438 * 15 14 12 17 17 C 1.38293 * 118.97289 * 179.71105 * 15 14 12 18 18 N 1.31793 * 120.91769 * 0.58093 * 17 15 14 19 19 C 1.31788 * 122.10890 * 359.71479 * 18 17 15 20 20 C 1.38296 * 120.91863 * 359.97438 * 19 18 17 21 21 Cl 1.73600 * 120.51051 * 180.02562 * 20 19 18 22 22 C 1.52996 * 117.49770 * 231.78351 * 9 7 2 23 23 C 1.53002 * 117.49598 * 300.44207 * 9 7 2 24 24 H 0.97006 * 119.99826 * 0.02562 * 1 2 3 25 25 H 1.08996 * 109.47273 * 305.10343 * 10 9 7 26 26 H 1.09004 * 109.46555 * 185.10627 * 10 9 7 27 27 H 1.08004 * 119.54183 * 180.31914 * 17 15 14 28 28 H 1.07999 * 119.54156 * 179.97438 * 19 18 17 29 29 H 1.09002 * 117.49494 * 215.00294 * 22 9 7 30 30 H 1.09005 * 117.50308 * 0.02562 * 22 9 7 31 31 H 1.08996 * 117.50168 * 359.97438 * 23 9 7 32 32 H 1.09004 * 117.49483 * 144.97610 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0796 -1.1969 -0.1031 9 6 1.2578 -2.4953 0.1421 10 6 0.7191 -3.0930 -1.1592 11 8 1.8298 -3.4642 -2.0176 12 6 1.5248 -4.0097 -3.2107 13 8 0.3630 -4.1706 -3.5256 14 6 2.6047 -4.4118 -4.1376 15 6 3.1525 -5.6996 -4.0896 16 17 2.5753 -6.8605 -2.9351 17 6 4.1567 -6.0340 -4.9797 18 7 4.6052 -5.1570 -5.8553 19 6 4.1225 -3.9331 -5.9310 20 6 3.1125 -3.5139 -5.0844 21 17 2.4840 -1.8993 -5.1939 22 6 1.7340 -3.4683 1.2226 23 6 0.4252 -2.6967 1.4099 24 1 -0.4850 0.8401 -0.0004 25 1 0.0974 -2.3560 -1.6676 26 1 0.1231 -3.9773 -0.9335 27 1 4.5822 -7.0264 -4.9542 28 1 4.5212 -3.2478 -6.6645 29 1 1.6635 -4.5343 1.0063 30 1 2.5871 -3.1671 1.8306 31 1 0.4180 -1.8883 2.1410 32 1 -0.5064 -3.2548 1.3168 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000849784684.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:47:13 Heat of formation + Delta-G solvation = -47.955264 kcal Electronic energy + Delta-G solvation = -21382.018495 eV Core-core repulsion = 17781.107789 eV Total energy + Delta-G solvation = -3600.910706 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 315.022 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.11279 -40.97262 -38.67293 -38.16446 -37.88713 -37.12073 -34.13642 -34.02532 -32.33786 -29.05753 -27.50037 -26.29388 -24.98595 -23.07569 -22.55757 -21.25140 -19.57403 -18.76603 -18.64793 -18.10578 -17.66844 -17.03756 -16.58036 -16.37485 -15.88732 -15.87827 -15.61536 -14.93808 -14.16012 -14.05044 -13.72302 -13.67847 -13.62864 -13.13529 -12.95827 -12.89700 -12.87415 -12.45570 -12.33588 -12.21508 -12.09592 -11.82250 -11.56103 -11.14555 -11.02631 -10.81363 -10.51607 -10.21888 -10.13165 -8.16165 -6.26877 -0.79113 -0.59911 0.37143 0.69785 0.76469 1.37423 1.40279 1.41018 1.50450 2.11507 2.40073 3.03851 3.11459 3.16426 3.21881 3.33670 3.52681 3.70494 4.01501 4.06768 4.31960 4.40526 4.44320 4.60250 4.73673 4.94115 4.94873 5.15770 5.25681 5.48075 5.58197 5.72865 6.30046 6.30862 6.42834 6.77821 7.41952 8.92685 Molecular weight = 315.02amu Principal moments of inertia in cm(-1) A = 0.014328 B = 0.005272 C = 0.004292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1953.722109 B = 5309.944120 C = 6522.249192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.028 3.972 3 Si 0.945 3.055 4 H -0.279 1.279 5 H -0.281 1.281 6 H -0.265 1.265 7 C -0.503 4.503 8 H 0.053 0.947 9 C 0.003 3.997 10 C 0.128 3.872 11 O -0.328 6.328 12 C 0.506 3.494 13 O -0.513 6.513 14 C -0.060 4.060 15 C -0.057 4.057 16 Cl -0.024 7.024 17 C 0.141 3.859 18 N -0.440 5.440 19 C 0.140 3.860 20 C -0.062 4.062 21 Cl -0.032 7.032 22 C -0.178 4.178 23 C -0.141 4.141 24 H 0.262 0.738 25 H 0.045 0.955 26 H 0.054 0.946 27 H 0.221 0.779 28 H 0.216 0.784 29 H 0.091 0.909 30 H 0.086 0.914 31 H 0.072 0.928 32 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.847 -11.499 -10.816 18.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.173 4.173 3 Si 0.770 3.230 4 H -0.205 1.205 5 H -0.206 1.206 6 H -0.190 1.190 7 C -0.540 4.540 8 H 0.072 0.928 9 C 0.002 3.998 10 C 0.055 3.945 11 O -0.243 6.243 12 C 0.349 3.651 13 O -0.403 6.403 14 C -0.070 4.070 15 C -0.086 4.086 16 Cl 0.006 6.994 17 C -0.017 4.017 18 N -0.149 5.149 19 C -0.017 4.017 20 C -0.092 4.092 21 Cl -0.003 7.003 22 C -0.215 4.215 23 C -0.179 4.179 24 H 0.071 0.929 25 H 0.064 0.936 26 H 0.072 0.928 27 H 0.238 0.762 28 H 0.233 0.767 29 H 0.109 0.891 30 H 0.105 0.895 31 H 0.090 0.910 32 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 8.874 -11.598 -11.313 18.473 hybrid contribution -1.190 1.524 0.888 2.128 sum 7.683 -10.074 -10.425 16.408 Atomic orbital electron populations 1.70089 1.07021 1.27328 1.50006 1.25649 0.95541 1.01881 0.94217 0.85761 0.79176 0.79835 0.78218 1.20458 1.20645 1.18953 1.20580 0.92846 0.89725 1.50893 0.92838 1.18870 1.00893 0.94821 0.85205 1.22711 0.85189 0.96591 0.90022 1.86668 1.41097 1.70134 1.26372 1.21117 0.87983 0.74322 0.81725 1.90834 1.21289 1.51936 1.76212 1.19517 0.96536 0.94737 0.96229 1.22287 0.99209 0.89892 0.97249 1.98437 1.87674 1.56124 1.57213 1.23545 0.89692 1.01328 0.87088 1.68017 1.25394 1.01896 1.19559 1.23462 0.89320 0.93445 0.95499 1.22360 0.99397 0.88350 0.99076 1.98467 1.85842 1.18701 1.97245 1.23030 0.97760 0.96396 1.04302 1.22478 0.93627 1.01228 1.00534 0.92940 0.93632 0.92770 0.76240 0.76725 0.89109 0.89547 0.90977 0.90264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.35 12.88 21.45 0.28 -51.07 16 2 C 0.03 1.51 5.38 84.66 0.46 1.97 16 3 Si 0.94 43.08 29.54 68.60 2.03 45.11 16 4 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 5 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 6 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 7 C -0.50 -27.34 8.78 25.60 0.22 -27.12 16 8 H 0.05 2.93 7.82 -2.91 -0.02 2.91 16 9 C 0.00 0.13 1.62 -52.93 -0.09 0.04 16 10 C 0.13 6.12 5.29 71.98 0.38 6.50 16 11 O -0.33 -14.62 10.17 -55.95 -0.57 -15.19 16 12 C 0.51 20.15 5.78 70.38 0.41 20.56 16 13 O -0.51 -22.60 16.89 20.01 0.34 -22.27 16 14 C -0.06 -1.86 5.80 -19.86 -0.12 -1.98 16 15 C -0.06 -1.39 6.38 22.72 0.14 -1.25 16 16 Cl -0.02 -0.57 28.17 -2.72 -0.08 -0.65 16 17 C 0.14 2.46 10.98 84.71 0.93 3.39 16 18 N -0.44 -8.09 10.33 -195.80 -2.02 -10.11 16 19 C 0.14 2.67 10.98 84.71 0.93 3.60 16 20 C -0.06 -1.67 6.38 22.72 0.14 -1.53 16 21 Cl -0.03 -0.96 28.17 -2.72 -0.08 -1.03 16 22 C -0.18 -7.41 9.96 30.62 0.30 -7.10 16 23 C -0.14 -6.41 9.37 30.62 0.29 -6.12 16 24 H 0.26 14.18 8.31 -92.70 -0.77 13.41 16 25 H 0.05 2.45 8.14 -2.39 -0.02 2.43 16 26 H 0.05 2.40 8.09 -2.38 -0.02 2.38 16 27 H 0.22 2.00 8.06 -2.91 -0.02 1.98 16 28 H 0.22 2.51 8.06 -2.91 -0.02 2.49 16 29 H 0.09 3.33 8.14 -2.39 -0.02 3.31 16 30 H 0.09 3.51 8.14 -2.38 -0.02 3.49 16 31 H 0.07 3.49 8.14 -2.39 -0.02 3.47 16 32 H 0.08 3.33 8.14 -2.38 -0.02 3.31 16 Total: -1.00 -64.86 325.21 5.07 -59.79 By element: Atomic # 1 Polarization: 3.30 SS G_CDS: 1.16 Total: 4.47 kcal Atomic # 6 Polarization: -13.05 SS G_CDS: 4.01 Total: -9.04 kcal Atomic # 7 Polarization: -59.44 SS G_CDS: -1.75 Total: -61.19 kcal Atomic # 8 Polarization: -37.23 SS G_CDS: -0.23 Total: -37.46 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.11 kcal Atomic # 17 Polarization: -1.53 SS G_CDS: -0.15 Total: -1.68 kcal Total: -64.86 5.07 -59.79 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849784684.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.833 kcal (2) G-P(sol) polarization free energy of solvation -64.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds