Wall clock time and date at job start Tue Mar 31 2020 10:29:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 S 1.75882 * 125.20593 * 2 1 4 4 C 1.75879 * 90.98130 * 180.02562 * 3 2 1 5 5 C 1.50696 * 125.19719 * 179.97438 * 4 3 2 6 6 N 1.46498 * 109.47115 * 269.69833 * 5 4 3 7 7 C 1.36932 * 120.00314 * 90.00214 * 6 5 4 8 8 H 1.08005 * 120.00094 * 215.28010 * 7 6 5 9 9 C 1.38816 * 120.00145 * 35.27109 * 7 6 5 10 10 N 1.31618 * 119.99457 * 21.64709 * 9 7 6 11 11 Si 1.86799 * 120.00262 * 201.64914 * 9 7 6 12 12 H 1.48486 * 109.47306 * 180.02562 * 11 9 7 13 13 H 1.48501 * 109.46840 * 300.00442 * 11 9 7 14 14 H 1.48505 * 109.46958 * 59.99549 * 11 9 7 15 15 C 1.46505 * 119.99858 * 269.99685 * 6 5 4 16 16 C 1.52996 * 117.49852 * 191.59883 * 15 6 5 17 17 C 1.53004 * 60.00258 * 252.51329 * 16 15 6 18 18 C 1.33396 * 109.60293 * 359.65734 * 4 3 2 19 19 C 1.33441 * 125.20001 * 179.69126 * 2 1 3 20 20 Br 1.89093 * 122.54718 * 359.97438 * 19 2 1 21 21 H 1.08997 * 109.47232 * 270.30659 * 1 2 3 22 22 H 1.09001 * 109.46968 * 30.30243 * 1 2 3 23 23 H 1.09004 * 109.47472 * 150.30453 * 1 2 3 24 24 H 1.09001 * 109.47034 * 149.69407 * 5 4 3 25 25 H 1.09003 * 109.47334 * 29.69520 * 5 4 3 26 26 H 0.97000 * 119.99339 * 178.98934 * 10 9 7 27 27 H 1.08994 * 115.55136 * 337.31145 * 15 6 5 28 28 H 1.08996 * 117.49945 * 359.97438 * 16 15 6 29 29 H 1.08997 * 117.50164 * 145.02447 * 16 15 6 30 30 H 1.09001 * 117.49772 * 252.51405 * 17 16 15 31 31 H 1.08997 * 117.49970 * 107.48484 * 17 16 15 32 32 H 1.08005 * 122.54266 * 180.28021 * 18 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.5209 1.4371 0.0000 4 6 3.9752 0.4479 -0.0008 5 6 5.3860 0.9776 -0.0017 6 7 5.8449 1.1422 -1.3832 7 6 5.6426 2.3294 -2.0350 8 1 5.4275 2.3345 -3.0934 9 6 5.7138 3.5262 -1.3354 10 7 6.3710 3.5846 -0.1966 11 14 4.8767 5.0538 -2.0102 12 1 5.1006 6.1915 -1.0826 13 1 5.4454 5.3823 -3.3421 14 1 3.4193 4.8019 -2.1429 15 6 6.5203 0.0368 -2.0674 16 6 7.2137 0.3463 -3.3956 17 6 5.9121 -0.4578 -3.3813 18 6 3.6385 -0.8429 0.0065 19 6 2.2762 -1.0904 0.0059 20 35 1.5601 -2.8405 0.0160 21 1 -0.3633 0.0055 1.0276 22 1 -0.3633 0.8873 -0.5185 23 1 -0.3634 -0.8927 -0.5091 24 1 6.0383 0.2747 0.5165 25 1 5.4127 1.9411 0.5073 26 1 6.4332 4.4244 0.2849 27 1 6.9850 -0.7046 -1.4174 28 1 7.1670 1.3723 -3.7606 29 1 8.1350 -0.1913 -3.6197 30 1 5.9771 -1.5245 -3.5959 31 1 5.0095 0.0393 -3.7366 32 1 4.3728 -1.6348 0.0119 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000876637975.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:29:52 Heat of formation + Delta-G solvation = 64.801071 kcal Electronic energy + Delta-G solvation = -16472.577902 eV Core-core repulsion = 13800.005792 eV Total energy + Delta-G solvation = -2672.572110 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 314.999 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -39.35929 -38.45095 -35.55234 -33.73562 -32.00256 -31.60069 -28.84243 -26.36785 -24.89019 -23.16416 -22.94854 -21.69031 -19.62076 -18.42493 -17.89579 -17.10923 -16.29475 -16.09219 -15.62168 -15.20796 -14.70552 -14.25940 -13.92829 -13.82063 -13.55593 -13.13142 -12.96763 -12.83405 -12.71650 -12.34296 -12.18935 -12.15715 -11.91316 -11.64077 -11.56286 -11.40237 -11.12000 -10.94900 -10.44754 -9.36144 -9.24573 -8.55989 -7.89719 -5.47549 0.03305 0.27012 0.94929 1.40898 1.45017 1.47266 1.50864 1.61759 2.45166 3.12465 3.42710 3.54552 3.89614 4.18504 4.28716 4.40391 4.47713 4.59260 4.67879 4.68902 4.72792 4.94271 5.00705 5.05528 5.08965 5.21679 5.32882 5.41276 5.53142 5.63135 5.68853 6.39896 7.08057 7.76662 8.27617 9.06019 Molecular weight = 315.00amu Principal moments of inertia in cm(-1) A = 0.018223 B = 0.005544 C = 0.004648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.139885 B = 5048.900967 C = 6022.740282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.171 4.171 3 S 0.110 5.890 4 C -0.156 4.156 5 C 0.204 3.796 6 N -0.553 5.553 7 C -0.255 4.255 8 H 0.051 0.949 9 C -0.021 4.021 10 N -0.909 5.909 11 Si 0.935 3.065 12 H -0.287 1.287 13 H -0.277 1.277 14 H -0.275 1.275 15 C 0.104 3.896 16 C -0.189 4.189 17 C -0.205 4.205 18 C -0.139 4.139 19 C -0.110 4.110 20 Br -0.026 7.026 21 H 0.093 0.907 22 H 0.078 0.922 23 H 0.088 0.912 24 H 0.058 0.942 25 H 0.086 0.914 26 H 0.256 0.744 27 H 0.107 0.893 28 H 0.073 0.927 29 H 0.104 0.896 30 H 0.103 0.897 31 H 0.062 0.938 32 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.238 -11.459 1.738 15.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.292 4.292 3 S 0.373 5.627 4 C -0.277 4.277 5 C 0.076 3.924 6 N -0.269 5.269 7 C -0.385 4.385 8 H 0.069 0.931 9 C -0.220 4.220 10 N -0.552 5.552 11 Si 0.763 3.237 12 H -0.213 1.213 13 H -0.203 1.203 14 H -0.201 1.201 15 C -0.004 4.004 16 C -0.228 4.228 17 C -0.245 4.245 18 C -0.170 4.170 19 C -0.202 4.202 20 Br 0.058 6.942 21 H 0.111 0.889 22 H 0.097 0.903 23 H 0.106 0.894 24 H 0.076 0.924 25 H 0.104 0.896 26 H 0.065 0.935 27 H 0.124 0.876 28 H 0.091 0.909 29 H 0.122 0.878 30 H 0.121 0.879 31 H 0.081 0.919 32 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -10.708 -10.369 1.883 15.024 hybrid contribution 0.340 0.002 -0.455 0.568 sum -10.368 -10.367 1.428 14.731 Atomic orbital electron populations 1.20519 0.85316 1.04164 1.04144 1.24822 1.01578 0.94721 1.08035 1.84605 0.97056 1.09074 1.71955 1.25764 1.00755 0.95926 1.05236 1.19513 0.85193 1.00936 0.86720 1.43473 1.62403 1.09577 1.11454 1.18930 1.42127 0.83666 0.93774 0.93099 1.25580 0.98794 0.99509 0.98087 1.70012 1.40806 1.26275 1.18093 0.85827 0.79646 0.80138 0.78089 1.21315 1.20257 1.20104 1.21386 0.98292 0.93069 0.87627 1.23072 0.96078 1.00355 1.03293 1.23258 0.95988 0.99161 1.06101 1.19814 0.94459 0.96154 1.06526 1.20631 0.94631 0.91732 1.13208 1.96546 1.84757 1.14992 1.97925 0.88889 0.90294 0.89386 0.92420 0.89616 0.93478 0.87552 0.90879 0.87755 0.87881 0.91927 0.83807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.89 10.02 71.23 0.71 -1.18 16 2 C -0.17 -5.31 6.51 24.60 0.16 -5.15 16 3 S 0.11 4.12 23.31 -56.49 -1.32 2.81 16 4 C -0.16 -6.22 6.09 24.59 0.15 -6.07 16 5 C 0.20 9.18 5.82 85.63 0.50 9.68 16 6 N -0.55 -26.20 2.78 -682.34 -1.90 -28.09 16 7 C -0.25 -13.28 8.20 84.04 0.69 -12.59 16 8 H 0.05 2.75 7.15 -2.91 -0.02 2.73 16 9 C -0.02 -1.13 4.97 84.86 0.42 -0.71 16 10 N -0.91 -50.08 11.32 21.65 0.25 -49.84 16 11 Si 0.94 43.03 29.61 68.60 2.03 45.07 16 12 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 13 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 14 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 15 C 0.10 4.24 6.61 44.99 0.30 4.53 16 16 C -0.19 -7.19 9.78 30.59 0.30 -6.89 16 17 C -0.20 -7.49 10.16 30.60 0.31 -7.18 16 18 C -0.14 -4.89 9.91 21.23 0.21 -4.68 16 19 C -0.11 -3.49 6.17 21.24 0.13 -3.36 16 20 Br -0.03 -0.65 32.71 -20.37 -0.67 -1.32 16 21 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 22 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 23 H 0.09 1.83 7.31 -2.38 -0.02 1.81 16 24 H 0.06 2.43 8.05 -2.39 -0.02 2.41 16 25 H 0.09 4.40 5.35 -2.39 -0.01 4.39 16 26 H 0.26 13.73 8.31 -92.71 -0.77 12.96 16 27 H 0.11 3.89 8.11 -2.39 -0.02 3.87 16 28 H 0.07 3.17 6.80 -2.39 -0.02 3.15 16 29 H 0.10 3.32 8.14 -2.39 -0.02 3.30 16 30 H 0.10 3.16 8.14 -2.39 -0.02 3.14 16 31 H 0.06 2.57 8.14 -2.39 -0.02 2.55 16 32 H 0.14 4.73 8.06 -2.91 -0.02 4.70 16 Total: -1.00 -55.96 305.14 3.40 -52.56 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: 1.12 Total: 12.41 kcal Atomic # 6 Polarization: -37.48 SS G_CDS: 3.88 Total: -33.60 kcal Atomic # 7 Polarization: -76.28 SS G_CDS: -1.65 Total: -77.93 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.07 kcal Atomic # 16 Polarization: 4.12 SS G_CDS: -1.32 Total: 2.81 kcal Atomic # 35 Polarization: -0.65 SS G_CDS: -0.67 Total: -1.32 kcal Total: -55.96 3.40 -52.56 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000876637975.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.361 kcal (2) G-P(sol) polarization free energy of solvation -55.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.560 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds