Wall clock time and date at job start Tue Mar 31 2020 11:06:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.36002 * 117.00692 * 2 1 4 4 C 1.38560 * 120.06207 * 359.97438 * 3 2 1 5 5 C 1.38239 * 120.01023 * 180.02562 * 4 3 2 6 6 C 1.50700 * 119.93213 * 179.97438 * 5 4 3 7 7 N 1.46501 * 109.47331 * 98.39837 * 6 5 4 8 8 C 1.46493 * 120.00421 * 275.73825 * 7 6 5 9 9 C 1.36939 * 119.99750 * 95.73567 * 7 6 5 10 10 H 1.08000 * 119.99846 * 25.67396 * 9 7 6 11 11 C 1.38812 * 119.99986 * 205.66813 * 9 7 6 12 12 N 1.31610 * 120.00218 * 12.64317 * 11 9 7 13 13 Si 1.86801 * 119.99912 * 192.63952 * 11 9 7 14 14 H 1.48503 * 109.47200 * 359.97438 * 13 11 9 15 15 H 1.48495 * 109.47178 * 120.00084 * 13 11 9 16 16 H 1.48499 * 109.47301 * 240.00502 * 13 11 9 17 17 C 1.38330 * 120.13639 * 359.94905 * 5 4 3 18 18 Br 1.89104 * 119.93476 * 180.02562 * 17 5 4 19 19 C 1.38315 * 120.12946 * 0.04396 * 17 5 4 20 20 C 1.38568 * 119.98699 * 359.97438 * 19 17 5 21 21 O 1.35993 * 120.06696 * 180.02562 * 20 19 17 22 22 H 1.08995 * 109.47870 * 180.02562 * 1 2 3 23 23 H 1.09011 * 109.46579 * 300.00056 * 1 2 3 24 24 H 1.08999 * 109.47352 * 59.99373 * 1 2 3 25 25 H 1.08005 * 119.99672 * 0.02562 * 4 3 2 26 26 H 1.08991 * 109.47293 * 218.40199 * 6 5 4 27 27 H 1.09003 * 109.47147 * 338.40202 * 6 5 4 28 28 H 1.09006 * 109.47175 * 90.65712 * 8 7 6 29 29 H 1.08994 * 109.47652 * 210.65697 * 8 7 6 30 30 H 1.09000 * 109.47356 * 330.65826 * 8 7 6 31 31 H 0.97002 * 120.00591 * 179.97438 * 12 11 9 32 32 H 1.07994 * 120.00908 * 180.25274 * 19 17 5 33 33 H 0.96698 * 113.99809 * 89.99424 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 1.2933 2.3747 -0.0005 5 6 1.9221 3.6058 -0.0011 6 6 1.1012 4.8695 -0.0022 7 7 1.0037 5.3898 1.3638 8 6 -0.0220 4.8730 2.2731 9 6 1.8714 6.3594 1.7906 10 1 2.3297 7.0267 1.0757 11 6 2.1620 6.4846 3.1422 12 7 1.8109 5.5337 3.9816 13 14 3.0515 8.0027 3.7696 14 1 3.3342 8.9158 2.6332 15 1 2.1986 8.7000 4.7652 16 1 4.3295 7.5987 4.4090 17 6 3.3034 3.6800 0.0000 18 35 4.1577 5.3671 0.0000 19 6 4.0609 2.5228 0.0007 20 6 3.4360 1.2860 0.0008 21 8 4.1792 0.1471 0.0020 22 1 -0.3635 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 0.2146 2.3194 -0.0005 26 1 1.5788 5.6125 -0.6408 27 1 0.1021 4.6534 -0.3808 28 1 0.3795 4.0263 2.8301 29 1 -0.3194 5.6574 2.9690 30 1 -0.8893 4.5505 1.6970 31 1 2.0143 5.6209 4.9261 32 1 5.1392 2.5830 0.0056 33 1 4.3935 -0.1817 0.8858 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001231473607.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:19 Heat of formation + Delta-G solvation = -20.949661 kcal Electronic energy + Delta-G solvation = -19019.718241 eV Core-core repulsion = 15900.674829 eV Total energy + Delta-G solvation = -3119.043412 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 315.026 amu Computer time = 1.78 seconds Orbital eigenvalues (eV) -40.12102 -37.65752 -36.88903 -35.02397 -31.64896 -31.13691 -29.76934 -28.51519 -27.24860 -25.95220 -25.13658 -22.12486 -21.82544 -20.42292 -18.26660 -16.97791 -16.85626 -16.18905 -15.69701 -14.97324 -14.82055 -14.14283 -13.99180 -13.70788 -13.57468 -13.12829 -12.52998 -12.06618 -11.92748 -11.69183 -11.33652 -11.20373 -10.90029 -10.84463 -10.63986 -10.43466 -10.31353 -10.14754 -9.94201 -9.61837 -9.15122 -8.43294 -8.39144 -7.56667 -6.75114 -5.74944 -3.16512 1.55461 1.58826 2.41391 3.37055 3.40267 3.45305 3.46154 3.85256 4.50573 4.53861 5.03613 5.18048 5.24729 5.36248 5.46027 5.55168 5.59760 5.65901 5.81584 6.05978 6.17155 6.26790 6.48680 6.56618 6.69688 6.85579 6.97631 7.28186 7.39177 7.63797 7.86411 7.96422 8.38147 9.21128 9.81072 10.30737 11.31103 Molecular weight = 315.03amu Principal moments of inertia in cm(-1) A = 0.016877 B = 0.006841 C = 0.005641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1658.618320 B = 4092.115086 C = 4962.190101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.312 6.312 3 C 0.112 3.888 4 C -0.190 4.190 5 C -0.024 4.024 6 C 0.169 3.831 7 N -0.580 5.580 8 C 0.162 3.838 9 C -0.236 4.236 10 H 0.077 0.923 11 C 0.008 3.992 12 N -0.903 5.903 13 Si 0.893 3.107 14 H -0.276 1.276 15 H -0.290 1.290 16 H -0.289 1.289 17 C -0.089 4.089 18 Br -0.035 7.035 19 C -0.082 4.082 20 C 0.052 3.948 21 O -0.487 6.487 22 H 0.096 0.904 23 H 0.057 0.943 24 H 0.054 0.946 25 H 0.131 0.869 26 H 0.070 0.930 27 H 0.047 0.953 28 H 0.025 0.975 29 H 0.050 0.950 30 H -0.003 1.003 31 H 0.251 0.749 32 H 0.135 0.865 33 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.171 -7.032 -8.138 10.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.225 6.225 3 C 0.066 3.934 4 C -0.210 4.210 5 C -0.031 4.031 6 C 0.042 3.958 7 N -0.299 5.299 8 C 0.017 3.983 9 C -0.366 4.366 10 H 0.094 0.906 11 C -0.191 4.191 12 N -0.547 5.547 13 Si 0.723 3.277 14 H -0.201 1.201 15 H -0.216 1.216 16 H -0.216 1.216 17 C -0.170 4.170 18 Br 0.050 6.950 19 C -0.103 4.103 20 C 0.006 3.994 21 O -0.295 6.295 22 H 0.114 0.886 23 H 0.075 0.925 24 H 0.073 0.927 25 H 0.149 0.851 26 H 0.088 0.912 27 H 0.065 0.935 28 H 0.043 0.957 29 H 0.069 0.931 30 H 0.015 0.985 31 H 0.062 0.938 32 H 0.153 0.847 33 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 0.511 -6.469 -8.532 10.719 hybrid contribution 0.256 0.201 1.288 1.328 sum 0.767 -6.267 -7.245 9.610 Atomic orbital electron populations 1.23048 0.78772 1.03486 1.01608 1.86089 1.21043 1.26620 1.88766 1.19435 0.91606 0.84662 0.97667 1.20914 0.99750 0.90880 1.09493 1.20999 0.92985 0.97487 0.91603 1.20228 0.95714 0.89951 0.89900 1.44182 1.34679 1.42104 1.08950 1.20802 0.87305 0.98606 0.91562 1.19349 1.20553 1.05215 0.91511 0.90556 1.25014 0.99308 0.97533 0.97232 1.70044 1.50389 1.31491 1.02776 0.86334 0.79386 0.83061 0.78879 1.20121 1.21648 1.21621 1.21289 0.94391 0.91454 1.09847 1.96633 1.78136 1.22683 1.97504 1.21059 1.00060 0.89914 0.99267 1.17370 0.86005 0.85991 1.10064 1.84869 1.72007 1.39688 1.32984 0.88558 0.92459 0.92712 0.85125 0.91180 0.93451 0.95701 0.93093 0.98458 0.93846 0.84705 0.76578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 9.81 101.05 0.99 1.29 16 2 O -0.31 -4.86 10.28 -34.26 -0.35 -5.21 16 3 C 0.11 1.95 6.70 -39.12 -0.26 1.68 16 4 C -0.19 -3.33 8.66 -39.46 -0.34 -3.67 16 5 C -0.02 -0.47 5.46 -104.59 -0.57 -1.05 16 6 C 0.17 3.41 5.37 -5.19 -0.03 3.38 16 7 N -0.58 -13.86 2.90 -182.51 -0.53 -14.38 16 8 C 0.16 3.81 9.02 59.84 0.54 4.35 16 9 C -0.24 -6.11 7.56 -15.06 -0.11 -6.22 16 10 H 0.08 1.95 6.91 -52.49 -0.36 1.59 16 11 C 0.01 0.21 5.07 -17.43 -0.09 0.12 16 12 N -0.90 -25.64 10.89 55.49 0.60 -25.03 16 13 Si 0.89 21.63 29.57 -169.99 -5.03 16.60 16 14 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 15 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 16 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 17 C -0.09 -1.74 6.22 -39.52 -0.25 -1.99 16 18 Br -0.04 -0.69 28.98 -68.01 -1.97 -2.66 16 19 C -0.08 -1.47 9.72 -39.43 -0.38 -1.85 16 20 C 0.05 0.91 6.72 -39.12 -0.26 0.65 16 21 O -0.49 -7.49 13.29 -34.23 -0.45 -7.95 16 22 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 23 H 0.06 0.65 7.66 -51.92 -0.40 0.25 16 24 H 0.05 0.56 7.66 -51.93 -0.40 0.16 16 25 H 0.13 2.02 6.28 -52.48 -0.33 1.69 16 26 H 0.07 1.39 6.89 -51.93 -0.36 1.04 16 27 H 0.05 0.85 7.85 -51.93 -0.41 0.44 16 28 H 0.02 0.64 7.55 -51.93 -0.39 0.25 16 29 H 0.05 1.29 7.21 -51.93 -0.37 0.92 16 30 H 0.00 -0.06 7.94 -51.93 -0.41 -0.48 16 31 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 32 H 0.14 2.16 8.06 -52.49 -0.42 1.73 16 33 H 0.38 4.23 9.06 45.56 0.41 4.65 16 LS Contribution 297.06 15.07 4.48 4.48 Total: -1.00 -30.63 297.06 -7.02 -37.65 By element: Atomic # 1 Polarization: 2.82 SS G_CDS: -3.00 Total: -0.18 kcal Atomic # 6 Polarization: -2.54 SS G_CDS: -0.76 Total: -3.31 kcal Atomic # 7 Polarization: -39.49 SS G_CDS: 0.08 Total: -39.42 kcal Atomic # 8 Polarization: -12.35 SS G_CDS: -0.81 Total: -13.16 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.03 Total: 16.60 kcal Atomic # 35 Polarization: -0.69 SS G_CDS: -1.97 Total: -2.66 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -30.63 -7.02 -37.65 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231473607.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.697 kcal (2) G-P(sol) polarization free energy of solvation -30.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.78 seconds