Wall clock time and date at job start Tue Mar 31 2020 10:53:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 120.00597 * 2 1 4 4 H 1.48496 * 109.47146 * 240.00368 * 3 2 1 5 5 H 1.48509 * 109.46906 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47003 * 120.00117 * 3 2 1 7 7 C 1.37885 * 119.99382 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99384 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00252 * 359.97438 * 7 2 1 10 10 N 1.46497 * 109.47445 * 180.02562 * 9 7 2 11 11 S 1.65594 * 120.00313 * 165.00356 * 10 9 7 12 12 O 1.42102 * 106.40408 * 311.46032 * 11 10 9 13 13 O 1.42100 * 106.40421 * 178.53775 * 11 10 9 14 14 C 1.76202 * 107.21981 * 64.99855 * 11 10 9 15 15 C 1.33606 * 125.12416 * 89.99852 * 14 11 10 16 16 C 1.37976 * 115.06241 * 180.02562 * 15 14 11 17 17 C 1.34741 * 114.70929 * 359.97438 * 16 15 14 18 18 C 1.47924 * 125.26280 * 180.02562 * 17 16 15 19 19 N 1.34199 * 126.70297 * 359.68354 * 18 17 16 20 20 N 1.28983 * 107.25309 * 180.26617 * 19 18 17 21 21 N 1.28719 * 108.98937 * 0.02562 * 20 19 18 22 22 H 0.97010 * 125.31616 * 179.97438 * 21 20 19 23 23 N 1.28866 * 109.36898 * 359.97438 * 21 20 19 24 24 S 1.75856 * 125.12546 * 270.34803 * 14 11 10 25 25 H 0.97007 * 119.99534 * 359.97438 * 1 2 3 26 26 H 1.09011 * 109.46784 * 60.00210 * 9 7 2 27 27 H 1.09001 * 109.47361 * 300.00328 * 9 7 2 28 28 H 0.97000 * 119.99699 * 345.00208 * 10 9 7 29 29 H 1.08000 * 122.46846 * 0.05875 * 15 14 11 30 30 H 1.07998 * 122.64533 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2843 2.7465 0.0006 6 1 3.1030 1.6961 1.2125 7 6 2.0044 -1.1942 -0.0005 8 1 3.0844 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 7 2.2027 -3.6128 -0.0005 11 16 1.6878 -5.1423 0.3705 12 8 0.9247 -5.0303 1.5640 13 8 2.8232 -5.9882 0.2505 14 6 0.5641 -5.6355 -0.8939 15 6 0.9039 -6.2694 -2.0198 16 6 -0.1454 -6.5568 -2.8683 17 6 -1.3529 -6.1527 -2.4277 18 6 -2.6315 -6.3407 -3.1475 19 7 -2.8006 -6.9293 -4.3417 20 7 -4.0603 -6.8845 -4.6152 21 7 -4.6778 -6.2974 -3.6504 22 1 -5.6337 -6.1365 -3.6120 23 7 -3.8280 -5.9568 -2.7436 24 16 -1.1725 -5.3598 -0.8682 25 1 -0.4850 0.8401 0.0004 26 1 0.6239 -2.5567 -0.8904 27 1 0.6245 -2.5571 0.8896 28 1 3.1346 -3.4542 -0.2179 29 1 1.9248 -6.5376 -2.2487 30 1 -0.0097 -7.0656 -3.8113 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001609495371.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:53:19 Heat of formation + Delta-G solvation = 83.340357 kcal Electronic energy + Delta-G solvation = -20746.829611 eV Core-core repulsion = 17220.285225 eV Total energy + Delta-G solvation = -3526.544386 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 315.025 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -44.72944 -38.03386 -36.73947 -35.43949 -34.70081 -34.61543 -33.71452 -32.19705 -29.87329 -26.78868 -25.50736 -24.87094 -22.98056 -22.55137 -20.54435 -19.69682 -18.46103 -18.24250 -17.43824 -17.37525 -16.09624 -15.88100 -15.51057 -15.20924 -14.57236 -14.26753 -13.63272 -13.52660 -13.47830 -12.83157 -12.65067 -12.36090 -12.16830 -11.87392 -11.69363 -11.68193 -11.60316 -11.48334 -11.31380 -11.21747 -10.94553 -10.81977 -10.77632 -10.15581 -9.49763 -9.09515 -8.93632 -8.55931 -8.28688 -6.20538 -4.25578 0.01771 0.80062 0.86732 1.29521 1.70577 1.78831 1.94886 2.63283 3.25503 3.30131 3.32022 3.37107 3.61468 4.05188 4.12339 4.32334 4.89794 4.93385 5.06950 5.16487 5.22874 5.39206 5.75167 5.83789 6.06847 6.17691 6.36247 7.22463 7.27858 7.72913 7.76628 7.82501 8.12577 8.77946 9.39506 10.89685 Molecular weight = 315.02amu Principal moments of inertia in cm(-1) A = 0.013751 B = 0.004296 C = 0.003532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2035.683703 B = 6516.089672 C = 7926.648251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.063 3.937 3 Si 0.904 3.096 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.531 4.531 8 H 0.067 0.933 9 C 0.243 3.757 10 N -1.097 6.097 11 S 2.710 3.290 12 O -0.954 6.954 13 O -0.969 6.969 14 C -0.775 4.775 15 C -0.008 4.008 16 C -0.106 4.106 17 C -0.114 4.114 18 C 0.246 3.754 19 N -0.257 5.257 20 N -0.047 5.047 21 N -0.222 5.222 22 H 0.478 0.522 23 N -0.286 5.286 24 S 0.316 5.684 25 H 0.267 0.733 26 H 0.024 0.976 27 H 0.040 0.960 28 H 0.413 0.587 29 H 0.162 0.838 30 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.889 -12.417 -6.886 15.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.571 4.571 8 H 0.085 0.915 9 C 0.120 3.880 10 N -0.861 5.861 11 S 2.793 3.207 12 O -0.944 6.944 13 O -0.959 6.959 14 C -0.975 4.975 15 C -0.043 4.043 16 C -0.143 4.143 17 C -0.237 4.237 18 C -0.035 4.035 19 N -0.131 5.131 20 N -0.042 5.042 21 N -0.069 5.069 22 H 0.333 0.667 23 N -0.138 5.138 24 S 0.586 5.414 25 H 0.076 0.924 26 H 0.041 0.959 27 H 0.058 0.942 28 H 0.248 0.752 29 H 0.179 0.821 30 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -8.494 -12.316 -5.581 15.968 hybrid contribution 0.895 0.731 -1.529 1.916 sum -7.599 -11.584 -7.109 15.572 Atomic orbital electron populations 1.69929 1.06055 1.27509 1.49222 1.24964 0.94978 0.99439 0.94705 0.86468 0.79439 0.82191 0.78802 1.20066 1.21122 1.19973 1.21134 0.93461 0.89770 1.52711 0.91536 1.19155 0.87830 0.83536 0.97491 1.55451 1.19685 1.23478 1.87465 1.01495 0.72896 0.72888 0.73384 1.93594 1.72700 1.86435 1.41669 1.93543 1.48629 1.66761 1.86957 1.36588 1.15592 1.21755 1.23609 1.19769 1.01163 0.93277 0.90055 1.20468 0.89777 1.02004 1.02006 1.21831 0.91587 1.08934 1.01350 1.22429 0.91058 0.98508 0.91457 1.76171 1.06210 1.18210 1.12503 1.78908 1.00395 1.11884 1.13034 1.47687 1.13032 1.36183 1.09983 0.66733 1.75105 0.99633 1.21946 1.17119 1.84537 0.96618 1.49657 1.10572 0.92367 0.95858 0.94192 0.75195 0.82075 0.82456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.87 13.29 55.43 0.74 -24.14 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.90 20.43 29.54 -169.99 -5.02 15.41 16 4 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 5 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 6 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 7 C -0.53 -13.88 9.27 -34.44 -0.32 -14.20 16 8 H 0.07 1.65 7.65 -52.49 -0.40 1.25 16 9 C 0.24 5.83 5.98 -5.20 -0.03 5.80 16 10 N -1.10 -21.41 5.99 -11.66 -0.07 -21.48 16 11 S 2.71 49.11 5.88 -107.50 -0.63 48.48 16 12 O -0.95 -19.98 17.38 -57.17 -0.99 -20.98 16 13 O -0.97 -17.94 17.79 -57.17 -1.02 -18.96 16 14 C -0.77 -12.38 6.55 29.11 0.19 -12.19 16 15 C -0.01 -0.11 9.82 -41.30 -0.41 -0.51 16 16 C -0.11 -1.35 10.07 -40.92 -0.41 -1.76 16 17 C -0.11 -1.61 6.44 -36.86 -0.24 -1.84 16 18 C 0.25 3.32 8.16 -156.25 -1.28 2.05 16 19 N -0.26 -3.35 12.51 32.08 0.40 -2.95 16 20 N -0.05 -0.51 13.46 60.35 0.81 0.30 16 21 N -0.22 -1.90 7.89 60.35 0.48 -1.43 16 22 H 0.48 1.62 8.96 -340.33 -3.05 -1.43 16 23 N -0.29 -3.43 12.41 32.10 0.40 -3.03 16 24 S 0.32 4.97 23.19 -107.50 -2.49 2.48 16 25 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 26 H 0.02 0.57 8.14 -51.92 -0.42 0.15 16 27 H 0.04 1.04 7.75 -51.93 -0.40 0.64 16 28 H 0.41 7.24 8.54 -34.46 -0.29 6.94 16 29 H 0.16 1.78 8.05 -52.49 -0.42 1.35 16 30 H 0.16 1.62 8.06 -52.49 -0.42 1.19 16 LS Contribution 307.87 15.07 4.64 4.64 Total: -1.00 -33.47 307.87 -9.90 -43.37 By element: Atomic # 1 Polarization: 3.91 SS G_CDS: -4.55 Total: -0.64 kcal Atomic # 6 Polarization: -18.50 SS G_CDS: -2.59 Total: -21.08 kcal Atomic # 7 Polarization: -55.48 SS G_CDS: 2.76 Total: -52.72 kcal Atomic # 8 Polarization: -37.92 SS G_CDS: -2.01 Total: -39.94 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Atomic # 16 Polarization: 54.08 SS G_CDS: -3.13 Total: 50.96 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -33.47 -9.90 -43.37 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609495371.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.713 kcal (2) G-P(sol) polarization free energy of solvation -33.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.373 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds