Wall clock time and date at job start Tue Mar 31 2020 10:53:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 120.00597 * 2 1 4 4 H 1.48496 * 109.47146 * 240.00368 * 3 2 1 5 5 H 1.48509 * 109.46906 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47003 * 120.00117 * 3 2 1 7 7 C 1.37885 * 119.99382 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99384 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00252 * 359.97438 * 7 2 1 10 10 N 1.46497 * 109.47445 * 180.02562 * 9 7 2 11 11 S 1.65594 * 120.00313 * 165.00356 * 10 9 7 12 12 O 1.42102 * 106.40408 * 311.46032 * 11 10 9 13 13 O 1.42100 * 106.40421 * 178.53775 * 11 10 9 14 14 C 1.76202 * 107.21981 * 64.99855 * 11 10 9 15 15 C 1.33606 * 125.12416 * 89.99852 * 14 11 10 16 16 C 1.37976 * 115.06241 * 180.02562 * 15 14 11 17 17 C 1.34741 * 114.70929 * 359.97438 * 16 15 14 18 18 C 1.47924 * 125.26280 * 180.02562 * 17 16 15 19 19 N 1.34199 * 126.70297 * 359.68354 * 18 17 16 20 20 N 1.28983 * 107.25309 * 180.26617 * 19 18 17 21 21 N 1.28719 * 108.98937 * 0.02562 * 20 19 18 22 22 H 0.97010 * 125.31616 * 179.97438 * 21 20 19 23 23 N 1.28866 * 109.36898 * 359.97438 * 21 20 19 24 24 S 1.75856 * 125.12546 * 270.34803 * 14 11 10 25 25 H 0.97007 * 119.99534 * 359.97438 * 1 2 3 26 26 H 1.09011 * 109.46784 * 60.00210 * 9 7 2 27 27 H 1.09001 * 109.47361 * 300.00328 * 9 7 2 28 28 H 0.97000 * 119.99699 * 345.00208 * 10 9 7 29 29 H 1.08000 * 122.46846 * 0.05875 * 15 14 11 30 30 H 1.07998 * 122.64533 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2843 2.7465 0.0006 6 1 3.1030 1.6961 1.2125 7 6 2.0044 -1.1942 -0.0005 8 1 3.0844 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 7 2.2027 -3.6128 -0.0005 11 16 1.6878 -5.1423 0.3705 12 8 0.9247 -5.0303 1.5640 13 8 2.8232 -5.9882 0.2505 14 6 0.5641 -5.6355 -0.8939 15 6 0.9039 -6.2694 -2.0198 16 6 -0.1454 -6.5568 -2.8683 17 6 -1.3529 -6.1527 -2.4277 18 6 -2.6315 -6.3407 -3.1475 19 7 -2.8006 -6.9293 -4.3417 20 7 -4.0603 -6.8845 -4.6152 21 7 -4.6778 -6.2974 -3.6504 22 1 -5.6337 -6.1365 -3.6120 23 7 -3.8280 -5.9568 -2.7436 24 16 -1.1725 -5.3598 -0.8682 25 1 -0.4850 0.8401 0.0004 26 1 0.6239 -2.5567 -0.8904 27 1 0.6245 -2.5571 0.8896 28 1 3.1346 -3.4542 -0.2179 29 1 1.9248 -6.5376 -2.2487 30 1 -0.0097 -7.0656 -3.8113 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001609495371.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:53:19 Heat of formation + Delta-G solvation = 56.119946 kcal Electronic energy + Delta-G solvation = -20748.009977 eV Core-core repulsion = 17220.285225 eV Total energy + Delta-G solvation = -3527.724752 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 315.025 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -45.63481 -39.14518 -38.25677 -36.98390 -36.48693 -35.53783 -34.66973 -34.12537 -30.96514 -28.72782 -26.59569 -25.77175 -24.49764 -23.98653 -21.67454 -20.82451 -19.80386 -19.42808 -18.99865 -18.32906 -17.76656 -17.28696 -16.98282 -16.62577 -16.17852 -15.28742 -15.18626 -14.78279 -14.61660 -14.38460 -14.07486 -13.82050 -13.60201 -13.41529 -13.21376 -13.16972 -12.72937 -12.63464 -12.58337 -12.53277 -12.38138 -12.28426 -12.06958 -11.97036 -11.43093 -10.84517 -10.20653 -10.10617 -9.72999 -8.22688 -6.34728 -1.10309 -0.60132 -0.04243 0.10894 0.55779 0.74581 1.24417 1.47152 1.49351 1.56763 1.58022 2.12479 2.42204 2.44270 2.67761 3.09215 3.12611 3.51147 3.89809 4.07442 4.20856 4.35825 4.59678 4.68553 4.79483 5.14740 5.28724 5.31074 5.46732 5.75946 5.98314 6.32352 6.79130 6.90929 7.34859 8.88109 Molecular weight = 315.02amu Principal moments of inertia in cm(-1) A = 0.013751 B = 0.004296 C = 0.003532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2035.683703 B = 6516.089672 C = 7926.648251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.010 3.990 3 Si 0.971 3.029 4 H -0.264 1.264 5 H -0.285 1.285 6 H -0.269 1.269 7 C -0.550 4.550 8 H 0.077 0.923 9 C 0.256 3.744 10 N -1.097 6.097 11 S 2.731 3.269 12 O -0.988 6.988 13 O -0.970 6.970 14 C -0.796 4.796 15 C 0.013 3.987 16 C -0.100 4.100 17 C -0.103 4.103 18 C 0.229 3.771 19 N -0.270 5.270 20 N -0.044 5.044 21 N -0.192 5.192 22 H 0.498 0.502 23 N -0.295 5.295 24 S 0.266 5.734 25 H 0.268 0.732 26 H 0.015 0.985 27 H 0.012 0.988 28 H 0.422 0.578 29 H 0.191 0.809 30 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.407 -12.834 -8.524 16.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.190 4.190 3 Si 0.795 3.205 4 H -0.189 1.189 5 H -0.210 1.210 6 H -0.194 1.194 7 C -0.589 4.589 8 H 0.095 0.905 9 C 0.131 3.869 10 N -0.860 5.860 11 S 2.818 3.182 12 O -0.979 6.979 13 O -0.961 6.961 14 C -1.000 5.000 15 C -0.022 4.022 16 C -0.136 4.136 17 C -0.226 4.226 18 C -0.052 4.052 19 N -0.144 5.144 20 N -0.039 5.039 21 N -0.043 5.043 22 H 0.358 0.642 23 N -0.148 5.148 24 S 0.536 5.464 25 H 0.077 0.923 26 H 0.033 0.967 27 H 0.030 0.970 28 H 0.258 0.742 29 H 0.208 0.792 30 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -7.984 -12.734 -7.201 16.666 hybrid contribution 0.615 0.734 -1.123 1.475 sum -7.369 -12.000 -8.324 16.359 Atomic orbital electron populations 1.70054 1.07633 1.28413 1.50281 1.25861 0.95778 1.03095 0.94268 0.85416 0.78160 0.77723 0.79210 1.18906 1.21020 1.19395 1.21595 0.94261 0.90804 1.52284 0.90505 1.18729 0.88027 0.84399 0.95736 1.55251 1.19715 1.23275 1.87768 1.00547 0.72565 0.72090 0.72981 1.93548 1.73358 1.86691 1.44260 1.93534 1.49084 1.66275 1.87182 1.36090 1.14902 1.24589 1.24400 1.20228 1.02800 0.90634 0.88561 1.20795 0.88785 1.01286 1.02746 1.21931 0.92649 1.07954 1.00082 1.22387 0.91188 0.99641 0.91956 1.76156 1.07129 1.18736 1.12363 1.78852 0.99922 1.11903 1.13194 1.47742 1.13781 1.34229 1.08588 0.64211 1.75080 0.99782 1.22031 1.17912 1.84695 0.97272 1.51594 1.12864 0.92297 0.96670 0.96976 0.74180 0.79165 0.79397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.53 13.29 21.45 0.28 -52.25 16 2 C 0.01 0.54 5.46 84.66 0.46 1.01 16 3 Si 0.97 41.58 29.54 68.60 2.03 43.60 16 4 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 5 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 6 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 7 C -0.55 -28.85 9.27 25.60 0.24 -28.62 16 8 H 0.08 3.76 7.65 -2.91 -0.02 3.74 16 9 C 0.26 12.56 5.98 85.63 0.51 13.07 16 10 N -1.10 -43.06 5.99 -190.79 -1.14 -44.20 16 11 S 2.73 99.27 5.88 -56.49 -0.33 98.94 16 12 O -0.99 -42.67 17.38 -128.00 -2.22 -44.89 16 13 O -0.97 -34.94 17.79 -128.00 -2.28 -37.22 16 14 C -0.80 -25.09 6.55 66.77 0.44 -24.65 16 15 C 0.01 0.32 9.82 21.16 0.21 0.53 16 16 C -0.10 -2.31 10.07 21.40 0.22 -2.10 16 17 C -0.10 -2.79 6.44 24.04 0.15 -2.64 16 18 C 0.23 5.87 8.16 137.12 1.12 6.99 16 19 N -0.27 -6.54 12.51 -52.41 -0.66 -7.20 16 20 N -0.04 -0.86 13.46 37.02 0.50 -0.36 16 21 N -0.19 -2.92 7.89 37.02 0.29 -2.62 16 22 H 0.50 2.30 8.96 -347.50 -3.12 -0.81 16 23 N -0.29 -6.71 12.41 -52.36 -0.65 -7.36 16 24 S 0.27 8.51 23.19 -56.49 -1.31 7.20 16 25 H 0.27 14.36 8.31 -92.70 -0.77 13.59 16 26 H 0.02 0.78 8.14 -2.38 -0.02 0.76 16 27 H 0.01 0.67 7.75 -2.39 -0.02 0.65 16 28 H 0.42 14.61 8.54 -96.75 -0.83 13.79 16 29 H 0.19 3.54 8.05 -2.91 -0.02 3.52 16 30 H 0.19 3.18 8.06 -2.91 -0.02 3.16 16 Total: -1.00 -71.47 307.87 -4.84 -76.31 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: -2.70 Total: 6.46 kcal Atomic # 6 Polarization: -39.76 SS G_CDS: 3.35 Total: -36.41 kcal Atomic # 7 Polarization: -112.61 SS G_CDS: -1.37 Total: -113.99 kcal Atomic # 8 Polarization: -77.61 SS G_CDS: -4.50 Total: -82.11 kcal Atomic # 14 Polarization: 41.58 SS G_CDS: 2.03 Total: 43.60 kcal Atomic # 16 Polarization: 107.78 SS G_CDS: -1.64 Total: 106.14 kcal Total: -71.47 -4.84 -76.31 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609495371.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.428 kcal (2) G-P(sol) polarization free energy of solvation -71.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.308 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds