Wall clock time and date at job start Tue Mar 31 2020 11:17:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46491 * 109.47411 * 31.20277 * 3 2 1 5 5 C 1.36809 * 120.00037 * 262.46773 * 4 3 2 6 6 H 1.08001 * 120.00268 * 206.28851 * 5 4 3 7 7 C 1.39088 * 119.99931 * 26.28729 * 5 4 3 8 8 N 1.31342 * 120.00120 * 25.70041 * 7 5 4 9 9 Si 1.86802 * 119.99833 * 205.70447 * 7 5 4 10 10 H 1.48499 * 109.47087 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.47055 * 119.99904 * 9 7 5 12 12 H 1.48501 * 109.46845 * 239.99654 * 9 7 5 13 13 C 1.34774 * 120.00123 * 82.47074 * 4 3 2 14 14 O 1.21608 * 119.99977 * 181.50488 * 13 4 3 15 15 C 1.47771 * 120.00095 * 1.49848 * 13 4 3 16 16 C 1.38497 * 119.28277 * 172.31372 * 15 13 4 17 17 C 1.40548 * 118.53066 * 180.02562 * 16 15 13 18 18 C 1.40291 * 122.08476 * 179.97438 * 17 16 15 19 19 C 1.36278 * 119.48180 * 180.02562 * 18 17 16 20 20 C 1.39300 * 120.96838 * 359.97438 * 19 18 17 21 21 C 1.36308 * 121.09223 * 0.02562 * 20 19 18 22 22 C 1.40190 * 119.57882 * 0.26956 * 21 20 19 23 23 C 1.40877 * 121.85257 * 180.27455 * 22 21 20 24 24 Cl 1.73595 * 119.89553 * 359.43055 * 23 22 21 25 25 N 1.30989 * 120.20975 * 179.72748 * 23 22 21 26 26 H 1.09002 * 109.46839 * 271.19745 * 3 2 1 27 27 H 1.08997 * 109.47089 * 151.20312 * 3 2 1 28 28 H 0.96990 * 120.00176 * 180.02562 * 8 7 5 29 29 H 1.08002 * 120.73691 * 0.04091 * 16 15 13 30 30 H 1.08002 * 120.25896 * 0.04023 * 18 17 16 31 31 H 1.07999 * 119.51740 * 179.97438 * 19 18 17 32 32 H 1.08000 * 119.45215 * 180.02562 * 20 19 18 33 33 H 1.07998 * 120.21132 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0969 -1.1804 -0.7155 5 6 3.4719 -2.2961 -0.0181 6 1 4.1975 -2.9770 -0.4381 7 6 2.9187 -2.5535 1.2318 8 7 1.7341 -2.0752 1.5368 9 14 3.8606 -3.5794 2.4767 10 1 5.1605 -3.9965 1.8922 11 1 4.1032 -2.7734 3.7001 12 1 3.0666 -4.7844 2.8272 13 6 3.1774 -1.1680 -2.0608 14 8 3.5573 -2.1578 -2.6564 15 6 2.8039 0.0484 -2.8121 16 6 3.0423 0.1026 -4.1753 17 6 2.6814 1.2673 -4.8742 18 6 2.8893 1.4025 -6.2550 19 6 2.5194 2.5560 -6.8792 20 6 1.9376 3.6019 -6.1665 21 6 1.7210 3.5043 -4.8243 22 6 2.0941 2.3354 -4.1463 23 6 1.8875 2.1810 -2.7614 24 17 1.1654 3.4670 -1.8457 25 7 2.2438 1.0725 -2.1613 26 1 2.9713 -0.0207 1.0275 27 1 2.9710 0.9014 -0.4950 28 1 1.3485 -2.2544 2.4085 29 1 3.4954 -0.7318 -4.6900 30 1 3.3389 0.5985 -6.8189 31 1 2.6796 2.6608 -7.9421 32 1 1.6533 4.5051 -6.6860 33 1 1.2693 4.3242 -4.2857 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037372972.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:12 Heat of formation + Delta-G solvation = 52.718392 kcal Electronic energy + Delta-G solvation = -23088.574085 eV Core-core repulsion = 19526.754516 eV Total energy + Delta-G solvation = -3561.819568 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.052 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -42.10967 -40.44852 -38.35222 -37.72154 -37.55914 -36.11626 -33.98482 -33.78176 -32.30994 -30.78934 -29.16766 -27.34052 -25.27887 -25.02008 -23.25003 -21.93030 -19.76933 -19.24195 -18.86881 -18.23053 -17.74294 -17.16560 -16.57116 -16.29581 -16.09774 -15.89792 -15.33457 -15.14087 -14.93994 -14.77090 -14.61968 -13.96466 -13.88903 -13.51770 -13.38292 -13.14252 -12.89998 -12.83645 -12.68866 -12.46375 -12.41057 -12.11164 -12.06451 -12.02889 -11.22472 -11.07451 -10.99630 -10.30904 -10.14990 -9.94658 -9.11570 -8.49882 -6.06747 -0.91260 -0.40044 0.56973 0.77332 1.28795 1.46912 1.54666 1.61976 1.97854 2.28097 2.34357 2.44897 2.83114 2.87776 3.03522 3.33035 3.50937 3.64618 3.72376 3.76967 3.95625 4.11399 4.27751 4.33949 4.61589 4.63892 4.67525 4.76661 4.98466 5.02203 5.34837 5.38863 5.40287 5.44740 5.85142 5.96042 6.24496 6.48972 6.98437 7.13427 7.20759 7.80437 8.53191 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.020698 B = 0.004619 C = 0.003929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.475266 B = 6061.061882 C = 7124.830165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C 0.279 3.721 3 C 0.224 3.776 4 N -0.420 5.420 5 C -0.352 4.352 6 H 0.091 0.909 7 C 0.010 3.990 8 N -0.874 5.874 9 Si 0.994 3.006 10 H -0.262 1.262 11 H -0.261 1.261 12 H -0.284 1.284 13 C 0.481 3.519 14 O -0.609 6.609 15 C 0.063 3.937 16 C -0.087 4.087 17 C -0.034 4.034 18 C -0.109 4.109 19 C -0.084 4.084 20 C -0.094 4.094 21 C -0.101 4.101 22 C -0.098 4.098 23 C 0.201 3.799 24 Cl -0.011 7.011 25 N -0.481 5.481 26 H 0.103 0.897 27 H 0.142 0.858 28 H 0.278 0.722 29 H 0.157 0.843 30 H 0.157 0.843 31 H 0.171 0.829 32 H 0.169 0.831 33 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.457 15.849 -13.430 21.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.191 5.191 2 C -0.039 4.039 3 C 0.098 3.902 4 N -0.136 5.136 5 C -0.479 4.479 6 H 0.109 0.891 7 C -0.196 4.196 8 N -0.509 5.509 9 Si 0.816 3.184 10 H -0.186 1.186 11 H -0.185 1.185 12 H -0.210 1.210 13 C 0.272 3.728 14 O -0.496 6.496 15 C -0.061 4.061 16 C -0.109 4.109 17 C -0.039 4.039 18 C -0.126 4.126 19 C -0.102 4.102 20 C -0.112 4.112 21 C -0.120 4.120 22 C -0.101 4.101 23 C 0.021 3.979 24 Cl 0.018 6.982 25 N -0.195 5.195 26 H 0.121 0.879 27 H 0.159 0.841 28 H 0.088 0.912 29 H 0.174 0.826 30 H 0.175 0.825 31 H 0.188 0.812 32 H 0.187 0.813 33 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 1.705 15.215 -12.521 19.779 hybrid contribution 0.450 -0.853 0.519 1.095 sum 2.156 14.362 -12.003 18.841 Atomic orbital electron populations 1.80789 1.14453 1.11765 1.12118 1.29108 0.95244 0.89728 0.89794 1.19255 0.81325 0.90194 0.99465 1.43648 1.53081 1.12847 1.04006 1.19772 1.23585 1.04121 1.00399 0.89140 1.26262 0.94710 0.98505 1.00115 1.70027 1.13138 1.44849 1.22863 0.84891 0.78511 0.77437 0.77536 1.18561 1.18548 1.21017 1.18139 0.85092 0.87119 0.82492 1.90589 1.54369 1.36056 1.68547 1.20734 1.00462 0.92062 0.92861 1.22298 0.97095 0.98517 0.92964 1.18286 0.97815 0.91910 0.95878 1.21342 1.00106 1.00370 0.90826 1.21539 0.94710 0.91697 1.02283 1.21493 0.96194 1.00361 0.93167 1.21299 0.99010 0.95635 0.96072 1.18772 1.02342 0.97533 0.91486 1.22248 0.96179 0.90406 0.89077 1.98392 1.80350 1.44739 1.74719 1.67078 1.11957 1.00305 1.40131 0.87918 0.84136 0.91183 0.82568 0.82489 0.81191 0.81331 0.83274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -26.74 18.54 20.01 0.37 -26.37 16 2 C 0.28 13.80 11.76 89.44 1.05 14.85 16 3 C 0.22 10.19 4.77 84.58 0.40 10.60 16 4 N -0.42 -21.74 2.57 -648.81 -1.67 -23.41 16 5 C -0.35 -19.18 9.08 84.12 0.76 -18.42 16 6 H 0.09 5.16 7.58 -2.91 -0.02 5.14 16 7 C 0.01 0.49 4.68 84.97 0.40 0.89 16 8 N -0.87 -46.69 10.23 21.69 0.22 -46.47 16 9 Si 0.99 40.34 29.62 68.60 2.03 42.37 16 10 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 11 H -0.26 -9.88 7.11 99.48 0.71 -9.18 16 12 H -0.28 -11.65 7.11 99.48 0.71 -10.94 16 13 C 0.48 24.56 7.51 86.77 0.65 25.21 16 14 O -0.61 -34.26 16.04 -4.06 -0.07 -34.32 16 15 C 0.06 2.64 6.59 41.45 0.27 2.91 16 16 C -0.09 -2.98 9.41 22.90 0.22 -2.77 16 17 C -0.03 -0.91 5.74 -21.29 -0.12 -1.04 16 18 C -0.11 -1.95 9.81 22.31 0.22 -1.73 16 19 C -0.08 -0.99 9.95 22.07 0.22 -0.77 16 20 C -0.09 -1.15 9.95 22.08 0.22 -0.93 16 21 C -0.10 -1.86 9.45 22.29 0.21 -1.65 16 22 C -0.10 -2.63 5.75 -21.24 -0.12 -2.75 16 23 C 0.20 6.46 7.35 85.46 0.63 7.09 16 24 Cl -0.01 -0.29 27.72 -2.72 -0.08 -0.37 16 25 N -0.48 -18.69 4.70 -174.96 -0.82 -19.52 16 26 H 0.10 4.57 7.07 -2.39 -0.02 4.56 16 27 H 0.14 5.68 5.41 -2.39 -0.01 5.67 16 28 H 0.28 14.09 8.31 -92.72 -0.77 13.32 16 29 H 0.16 5.15 7.62 -2.91 -0.02 5.13 16 30 H 0.16 2.13 8.06 -2.91 -0.02 2.11 16 31 H 0.17 0.73 8.06 -2.91 -0.02 0.71 16 32 H 0.17 0.79 8.06 -2.91 -0.02 0.77 16 33 H 0.15 2.31 7.03 -2.91 -0.02 2.29 16 Total: -1.00 -72.95 309.74 6.19 -66.76 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: 1.19 Total: 9.84 kcal Atomic # 6 Polarization: 26.48 SS G_CDS: 5.01 Total: 31.49 kcal Atomic # 7 Polarization: -113.87 SS G_CDS: -1.90 Total: -115.77 kcal Atomic # 8 Polarization: -34.26 SS G_CDS: -0.07 Total: -34.32 kcal Atomic # 14 Polarization: 40.34 SS G_CDS: 2.03 Total: 42.37 kcal Atomic # 17 Polarization: -0.29 SS G_CDS: -0.08 Total: -0.37 kcal Total: -72.95 6.19 -66.76 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037372972.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.483 kcal (2) G-P(sol) polarization free energy of solvation -72.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.764 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds