Wall clock time and date at job start Tue Mar 31 2020 11:26:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86802 * 119.99896 * 2 1 4 4 H 1.48500 * 109.46765 * 269.99513 * 3 2 1 5 5 H 1.48497 * 109.47360 * 29.99913 * 3 2 1 6 6 H 1.48503 * 109.46786 * 149.99912 * 3 2 1 7 7 C 1.38817 * 120.00026 * 179.97438 * 2 1 3 8 8 H 1.07990 * 119.99837 * 161.12057 * 7 2 1 9 9 N 1.36936 * 119.99734 * 341.12425 * 7 2 1 10 10 C 1.46495 * 120.00374 * 320.25101 * 9 7 2 11 11 C 1.53005 * 109.46687 * 269.99525 * 10 9 7 12 12 O 1.42903 * 109.46569 * 65.00309 * 11 10 9 13 13 C 1.35957 * 116.99561 * 179.97438 * 12 11 10 14 14 C 1.38692 * 120.04557 * 359.72280 * 13 12 11 15 15 C 1.38146 * 119.96790 * 180.25143 * 14 13 12 16 16 C 1.38384 * 120.06613 * 0.04556 * 15 14 13 17 17 Cl 1.73593 * 119.95407 * 179.97438 * 16 15 14 18 18 C 1.38339 * 120.08828 * 359.95694 * 16 15 14 19 19 C 1.38248 * 120.03410 * 0.02562 * 18 16 15 20 20 Cl 1.73600 * 120.03523 * 179.97438 * 19 18 16 21 21 C 1.46503 * 119.99586 * 140.24761 * 9 7 2 22 22 C 1.52998 * 117.50067 * 3.16417 * 21 9 7 23 23 C 1.52999 * 117.49923 * 294.50563 * 21 9 7 24 24 H 0.96997 * 119.99779 * 355.02696 * 1 2 3 25 25 H 1.09000 * 109.47385 * 149.99974 * 10 9 7 26 26 H 1.08994 * 109.47249 * 29.99843 * 10 9 7 27 27 H 1.08990 * 109.47504 * 305.00386 * 11 10 9 28 28 H 1.09003 * 109.47168 * 184.99698 * 11 10 9 29 29 H 1.07996 * 120.01648 * 0.25527 * 14 13 12 30 30 H 1.08004 * 119.97046 * 180.02562 * 15 14 13 31 31 H 1.08006 * 119.98541 * 180.02562 * 18 16 15 32 32 H 1.08999 * 115.55034 * 148.83486 * 21 9 7 33 33 H 1.09006 * 117.50100 * 0.02562 * 22 21 9 34 34 H 1.09000 * 117.50039 * 145.02127 * 22 21 9 35 35 H 1.09002 * 117.50000 * 214.97852 * 23 21 9 36 36 H 1.08998 * 117.50060 * 359.97438 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4401 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0467 -1.2274 -0.3021 9 7 1.3808 -2.3560 0.3847 10 6 0.4494 -2.3408 1.5153 11 6 1.2132 -2.6294 2.8092 12 8 2.1353 -1.5680 3.0647 13 6 2.8984 -1.6698 4.1854 14 6 2.7578 -2.7655 5.0240 15 6 3.5303 -2.8647 6.1651 16 6 4.4435 -1.8715 6.4726 17 17 5.4122 -1.9988 7.9075 18 6 4.5857 -0.7775 5.6379 19 6 3.8150 -0.6744 4.4949 20 17 3.9929 0.6987 3.4478 21 6 1.6389 -3.6057 -0.3350 22 6 2.6768 -3.5725 -1.4586 23 6 1.1878 -3.6862 -1.7948 24 1 -0.4850 0.8369 0.0728 25 1 -0.3149 -3.1036 1.3668 26 1 -0.0235 -1.3611 1.5833 27 1 1.7583 -3.5677 2.7078 28 1 0.5089 -2.7060 3.6376 29 1 2.0449 -3.5407 4.7852 30 1 3.4211 -3.7181 6.8179 31 1 5.2993 -0.0035 5.8794 32 1 1.5733 -4.5147 0.2629 33 1 3.1681 -2.6209 -1.6621 34 1 3.2939 -4.4598 -1.6001 35 1 0.8260 -4.6484 -2.1574 36 1 0.6988 -2.8097 -2.2196 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063516415.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:01 Heat of formation + Delta-G solvation = 24.999474 kcal Electronic energy + Delta-G solvation = -21897.111561 eV Core-core repulsion = 18435.197504 eV Total energy + Delta-G solvation = -3461.914057 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 315.053 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.95902 -37.71487 -36.85783 -36.35167 -35.85582 -33.51324 -31.24458 -30.88731 -29.50768 -27.90982 -24.54341 -23.22157 -22.36546 -21.49072 -21.12332 -19.67310 -18.17849 -16.64594 -16.42679 -16.02567 -15.48270 -15.16594 -14.79358 -14.51185 -13.98072 -13.80196 -13.50508 -13.34195 -12.60538 -12.53086 -12.16508 -12.04555 -11.88929 -11.42665 -11.22412 -10.98929 -10.88313 -10.79922 -10.73656 -10.50837 -10.34300 -10.12603 -10.07220 -9.77418 -9.59772 -9.28222 -8.92756 -8.40910 -7.87927 -6.52487 -5.75207 -3.39771 1.07582 1.21820 1.98923 2.55337 3.40585 3.48362 3.52461 3.54626 3.62046 4.51148 4.71241 4.84659 4.93591 5.06500 5.15822 5.35660 5.42046 5.59815 5.64300 5.78303 5.81866 5.89456 6.02381 6.05646 6.13441 6.23940 6.31635 6.42703 6.49944 6.60955 6.63665 7.03934 7.23441 7.45498 7.78824 7.86335 8.53470 9.16678 9.79017 10.34315 11.22329 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.015588 B = 0.004726 C = 0.003995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1795.868006 B = 5923.394959 C = 7007.586502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.025 3.975 3 Si 0.885 3.115 4 H -0.291 1.291 5 H -0.290 1.290 6 H -0.266 1.266 7 C -0.240 4.240 8 H 0.060 0.940 9 N -0.546 5.546 10 C 0.147 3.853 11 C 0.038 3.962 12 O -0.253 6.253 13 C 0.162 3.838 14 C -0.199 4.199 15 C -0.065 4.065 16 C -0.080 4.080 17 Cl -0.075 7.075 18 C -0.066 4.066 19 C -0.071 4.071 20 Cl -0.035 7.035 21 C 0.117 3.883 22 C -0.194 4.194 23 C -0.220 4.220 24 H 0.253 0.747 25 H 0.054 0.946 26 H 0.107 0.893 27 H 0.049 0.951 28 H 0.047 0.953 29 H 0.143 0.857 30 H 0.135 0.865 31 H 0.143 0.857 32 H 0.083 0.917 33 H 0.097 0.903 34 H 0.072 0.928 35 H 0.068 0.932 36 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.396 -5.886 11.935 14.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.175 4.175 3 Si 0.715 3.285 4 H -0.218 1.218 5 H -0.216 1.216 6 H -0.190 1.190 7 C -0.369 4.369 8 H 0.078 0.922 9 N -0.262 5.262 10 C 0.020 3.980 11 C -0.040 4.040 12 O -0.163 6.163 13 C 0.112 3.888 14 C -0.218 4.218 15 C -0.084 4.084 16 C -0.107 4.107 17 Cl -0.047 7.047 18 C -0.085 4.085 19 C -0.099 4.099 20 Cl -0.006 7.006 21 C 0.009 3.991 22 C -0.232 4.232 23 C -0.261 4.261 24 H 0.063 0.937 25 H 0.072 0.928 26 H 0.125 0.875 27 H 0.067 0.933 28 H 0.065 0.935 29 H 0.161 0.839 30 H 0.153 0.847 31 H 0.161 0.839 32 H 0.101 0.899 33 H 0.116 0.884 34 H 0.091 0.909 35 H 0.086 0.914 36 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 5.345 -5.453 11.746 14.010 hybrid contribution 0.480 0.727 0.134 0.881 sum 5.825 -4.726 11.879 14.050 Atomic orbital electron populations 1.69998 1.05562 1.26078 1.51658 1.25065 0.94809 0.98459 0.99158 0.86571 0.80499 0.83996 0.77481 1.21802 1.21640 1.19045 1.18813 0.92578 0.84510 1.41024 0.92208 1.43287 1.49637 1.03649 1.29621 1.21044 0.90460 1.04155 0.82370 1.24092 0.90498 0.88533 1.00834 1.86615 1.48446 1.45528 1.35708 1.19132 0.90226 0.91909 0.87505 1.21200 1.04507 0.99613 0.96472 1.20839 0.93571 0.97531 0.96432 1.20432 0.99894 0.98368 0.91980 1.98344 1.70600 1.98060 1.37677 1.20676 0.98571 0.97456 0.91793 1.20106 1.01136 0.92938 0.95687 1.98430 1.96806 1.40686 1.64705 1.21245 1.00905 0.90539 0.86451 1.23012 0.92105 1.01840 1.06227 1.23356 0.96964 1.00958 1.04789 0.93689 0.92800 0.87544 0.93311 0.93523 0.83897 0.84689 0.83930 0.89887 0.88419 0.90923 0.91366 0.88921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.79 11.46 55.49 0.64 -24.15 16 2 C 0.03 0.67 5.00 -17.43 -0.09 0.59 16 3 Si 0.89 21.73 29.60 -169.99 -5.03 16.70 16 4 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 6 H -0.27 -6.31 6.79 56.52 0.38 -5.93 16 7 C -0.24 -6.22 7.97 -15.06 -0.12 -6.34 16 8 H 0.06 1.61 6.76 -52.49 -0.35 1.26 16 9 N -0.55 -12.66 2.72 -165.67 -0.45 -13.11 16 10 C 0.15 3.10 5.76 -4.04 -0.02 3.07 16 11 C 0.04 0.67 5.08 37.16 0.19 0.86 16 12 O -0.25 -5.04 9.07 -19.60 -0.18 -5.22 16 13 C 0.16 2.75 6.68 -39.20 -0.26 2.49 16 14 C -0.20 -2.71 9.04 -39.45 -0.36 -3.07 16 15 C -0.06 -0.78 9.82 -39.56 -0.39 -1.17 16 16 C -0.08 -1.01 6.32 -39.49 -0.25 -1.26 16 17 Cl -0.08 -0.84 28.95 -51.86 -1.50 -2.34 16 18 C -0.07 -0.90 9.61 -39.54 -0.38 -1.28 16 19 C -0.07 -1.17 6.33 -39.37 -0.25 -1.42 16 20 Cl -0.04 -0.65 28.19 -51.86 -1.46 -2.11 16 21 C 0.12 2.39 6.56 -67.93 -0.45 1.95 16 22 C -0.19 -3.76 9.80 -26.70 -0.26 -4.02 16 23 C -0.22 -4.36 10.36 -26.70 -0.28 -4.64 16 24 H 0.25 6.92 8.32 -40.82 -0.34 6.58 16 25 H 0.05 1.04 8.07 -51.93 -0.42 0.62 16 26 H 0.11 2.63 5.58 -51.93 -0.29 2.34 16 27 H 0.05 0.79 7.67 -51.93 -0.40 0.40 16 28 H 0.05 0.69 7.65 -51.93 -0.40 0.30 16 29 H 0.14 1.69 6.30 -52.49 -0.33 1.36 16 30 H 0.14 1.27 8.06 -52.48 -0.42 0.85 16 31 H 0.14 1.71 8.06 -52.48 -0.42 1.29 16 32 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 33 H 0.10 2.10 6.47 -51.93 -0.34 1.76 16 34 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 36 H 0.09 2.13 8.14 -51.93 -0.42 1.70 16 LS Contribution 334.85 15.07 5.05 5.05 Total: -1.00 -27.89 334.85 -10.07 -37.96 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: -4.22 Total: 1.47 kcal Atomic # 6 Polarization: -11.34 SS G_CDS: -2.91 Total: -14.25 kcal Atomic # 7 Polarization: -37.44 SS G_CDS: 0.18 Total: -37.26 kcal Atomic # 8 Polarization: -5.04 SS G_CDS: -0.18 Total: -5.22 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.03 Total: 16.70 kcal Atomic # 17 Polarization: -1.49 SS G_CDS: -2.96 Total: -4.45 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -27.89 -10.07 -37.96 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063516415.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.961 kcal (2) G-P(sol) polarization free energy of solvation -27.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.962 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds