Wall clock time and date at job start Tue Mar 31 2020 11:26:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86802 * 119.99896 * 2 1 4 4 H 1.48500 * 109.46765 * 269.99513 * 3 2 1 5 5 H 1.48497 * 109.47360 * 29.99913 * 3 2 1 6 6 H 1.48503 * 109.46786 * 149.99912 * 3 2 1 7 7 C 1.38817 * 120.00026 * 179.97438 * 2 1 3 8 8 H 1.07990 * 119.99837 * 161.12057 * 7 2 1 9 9 N 1.36936 * 119.99734 * 341.12425 * 7 2 1 10 10 C 1.46495 * 120.00374 * 320.25101 * 9 7 2 11 11 C 1.53005 * 109.46687 * 269.99525 * 10 9 7 12 12 O 1.42903 * 109.46569 * 65.00309 * 11 10 9 13 13 C 1.35957 * 116.99561 * 179.97438 * 12 11 10 14 14 C 1.38692 * 120.04557 * 359.72280 * 13 12 11 15 15 C 1.38146 * 119.96790 * 180.25143 * 14 13 12 16 16 C 1.38384 * 120.06613 * 0.04556 * 15 14 13 17 17 Cl 1.73593 * 119.95407 * 179.97438 * 16 15 14 18 18 C 1.38339 * 120.08828 * 359.95694 * 16 15 14 19 19 C 1.38248 * 120.03410 * 0.02562 * 18 16 15 20 20 Cl 1.73600 * 120.03523 * 179.97438 * 19 18 16 21 21 C 1.46503 * 119.99586 * 140.24761 * 9 7 2 22 22 C 1.52998 * 117.50067 * 3.16417 * 21 9 7 23 23 C 1.52999 * 117.49923 * 294.50563 * 21 9 7 24 24 H 0.96997 * 119.99779 * 355.02696 * 1 2 3 25 25 H 1.09000 * 109.47385 * 149.99974 * 10 9 7 26 26 H 1.08994 * 109.47249 * 29.99843 * 10 9 7 27 27 H 1.08990 * 109.47504 * 305.00386 * 11 10 9 28 28 H 1.09003 * 109.47168 * 184.99698 * 11 10 9 29 29 H 1.07996 * 120.01648 * 0.25527 * 14 13 12 30 30 H 1.08004 * 119.97046 * 180.02562 * 15 14 13 31 31 H 1.08006 * 119.98541 * 180.02562 * 18 16 15 32 32 H 1.08999 * 115.55034 * 148.83486 * 21 9 7 33 33 H 1.09006 * 117.50100 * 0.02562 * 22 21 9 34 34 H 1.09000 * 117.50039 * 145.02127 * 22 21 9 35 35 H 1.09002 * 117.50000 * 214.97852 * 23 21 9 36 36 H 1.08998 * 117.50060 * 359.97438 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4401 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0467 -1.2274 -0.3021 9 7 1.3808 -2.3560 0.3847 10 6 0.4494 -2.3408 1.5153 11 6 1.2132 -2.6294 2.8092 12 8 2.1353 -1.5680 3.0647 13 6 2.8984 -1.6698 4.1854 14 6 2.7578 -2.7655 5.0240 15 6 3.5303 -2.8647 6.1651 16 6 4.4435 -1.8715 6.4726 17 17 5.4122 -1.9988 7.9075 18 6 4.5857 -0.7775 5.6379 19 6 3.8150 -0.6744 4.4949 20 17 3.9929 0.6987 3.4478 21 6 1.6389 -3.6057 -0.3350 22 6 2.6768 -3.5725 -1.4586 23 6 1.1878 -3.6862 -1.7948 24 1 -0.4850 0.8369 0.0728 25 1 -0.3149 -3.1036 1.3668 26 1 -0.0235 -1.3611 1.5833 27 1 1.7583 -3.5677 2.7078 28 1 0.5089 -2.7060 3.6376 29 1 2.0449 -3.5407 4.7852 30 1 3.4211 -3.7181 6.8179 31 1 5.2993 -0.0035 5.8794 32 1 1.5733 -4.5147 0.2629 33 1 3.1681 -2.6209 -1.6621 34 1 3.2939 -4.4598 -1.6001 35 1 0.8260 -4.6484 -2.1574 36 1 0.6988 -2.8097 -2.2196 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063516415.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:00 Heat of formation + Delta-G solvation = 11.917692 kcal Electronic energy + Delta-G solvation = -21897.678830 eV Core-core repulsion = 18435.197504 eV Total energy + Delta-G solvation = -3462.481326 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 315.053 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.14589 -39.05618 -38.32319 -37.55878 -36.99459 -35.25500 -32.99992 -32.00502 -30.80079 -29.45522 -26.33283 -24.54395 -23.52774 -23.00712 -22.55432 -21.39321 -19.36606 -18.31395 -17.69780 -17.27991 -17.01269 -16.81783 -16.19798 -15.86531 -15.57536 -15.08870 -14.73498 -14.70963 -14.18851 -13.82979 -13.55197 -13.39501 -13.30757 -13.06199 -12.73669 -12.57800 -12.52830 -12.20799 -12.05934 -11.96021 -11.89827 -11.70416 -11.53236 -11.39702 -11.29908 -10.84922 -10.40175 -10.02592 -9.05491 -8.42998 -7.73138 -5.40823 0.00434 0.11761 0.92785 1.32665 1.42634 1.46779 1.56080 2.37684 2.44177 2.54326 3.24565 3.48130 3.53032 3.68618 3.85866 4.01094 4.24563 4.33249 4.37052 4.45937 4.51919 4.60336 4.62981 4.67538 4.73890 4.96859 4.98692 5.05074 5.10120 5.12828 5.40447 5.44517 5.59905 5.71143 5.80498 6.47077 6.60621 7.24361 7.91459 8.40182 9.17209 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.015588 B = 0.004726 C = 0.003995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1795.868006 B = 5923.394959 C = 7007.586502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.014 4.014 3 Si 0.918 3.082 4 H -0.296 1.296 5 H -0.299 1.299 6 H -0.258 1.258 7 C -0.222 4.222 8 H 0.044 0.956 9 N -0.562 5.562 10 C 0.144 3.856 11 C 0.047 3.953 12 O -0.292 6.292 13 C 0.135 3.865 14 C -0.190 4.190 15 C -0.053 4.053 16 C -0.077 4.077 17 Cl -0.056 7.056 18 C -0.065 4.065 19 C -0.090 4.090 20 Cl -0.067 7.067 21 C 0.105 3.895 22 C -0.186 4.186 23 C -0.216 4.216 24 H 0.246 0.754 25 H 0.070 0.930 26 H 0.068 0.932 27 H 0.067 0.933 28 H 0.076 0.924 29 H 0.165 0.835 30 H 0.170 0.830 31 H 0.155 0.845 32 H 0.118 0.882 33 H 0.068 0.932 34 H 0.109 0.891 35 H 0.102 0.898 36 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.257 -8.713 13.934 17.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.211 4.211 3 Si 0.748 3.252 4 H -0.224 1.224 5 H -0.226 1.226 6 H -0.182 1.182 7 C -0.353 4.353 8 H 0.062 0.938 9 N -0.279 5.279 10 C 0.018 3.982 11 C -0.030 4.030 12 O -0.204 6.204 13 C 0.086 3.914 14 C -0.209 4.209 15 C -0.072 4.072 16 C -0.104 4.104 17 Cl -0.028 7.028 18 C -0.084 4.084 19 C -0.118 4.118 20 Cl -0.038 7.038 21 C -0.003 4.003 22 C -0.224 4.224 23 C -0.257 4.257 24 H 0.055 0.945 25 H 0.088 0.912 26 H 0.086 0.914 27 H 0.085 0.915 28 H 0.094 0.906 29 H 0.183 0.817 30 H 0.187 0.813 31 H 0.173 0.827 32 H 0.136 0.864 33 H 0.087 0.913 34 H 0.127 0.873 35 H 0.120 0.880 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 6.229 -8.299 13.763 17.236 hybrid contribution 0.291 1.493 -0.366 1.565 sum 6.520 -6.805 13.397 16.380 Atomic orbital electron populations 1.70092 1.06257 1.25727 1.53990 1.25410 0.95162 1.00057 1.00456 0.86034 0.80115 0.82175 0.76877 1.22384 1.22556 1.18225 1.18744 0.91862 0.85755 1.38936 0.93798 1.43462 1.49780 1.03806 1.30896 1.20978 0.90914 1.02655 0.83682 1.23845 0.90841 0.88613 0.99683 1.86530 1.49588 1.46684 1.37552 1.19379 0.90769 0.93459 0.87743 1.21434 1.04700 0.98725 0.96027 1.21217 0.92032 0.97994 0.95935 1.20584 0.99803 0.97858 0.92159 1.98359 1.70075 1.97954 1.36370 1.20811 0.98243 0.98309 0.91037 1.20303 1.02659 0.92407 0.96428 1.98407 1.96996 1.42414 1.66010 1.21577 1.01394 0.90438 0.86861 1.23002 0.92074 1.01958 1.05413 1.23261 0.97151 1.00919 1.04355 0.94477 0.91179 0.91387 0.91512 0.90646 0.81713 0.81279 0.82704 0.86405 0.91327 0.87328 0.87984 0.92933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.91 11.46 21.65 0.25 -52.66 16 2 C -0.01 -0.77 5.00 84.86 0.42 -0.34 16 3 Si 0.92 46.16 29.60 68.60 2.03 48.19 16 4 H -0.30 -14.95 7.11 99.48 0.71 -14.24 16 5 H -0.30 -15.29 7.11 99.48 0.71 -14.59 16 6 H -0.26 -12.48 6.79 99.48 0.68 -11.80 16 7 C -0.22 -11.78 7.97 84.03 0.67 -11.11 16 8 H 0.04 2.45 6.76 -2.92 -0.02 2.43 16 9 N -0.56 -25.95 2.72 -678.05 -1.85 -27.80 16 10 C 0.14 6.01 5.76 86.38 0.50 6.51 16 11 C 0.05 1.56 5.08 71.98 0.37 1.93 16 12 O -0.29 -11.49 9.07 -93.06 -0.84 -12.34 16 13 C 0.14 4.41 6.68 22.51 0.15 4.56 16 14 C -0.19 -4.56 9.04 22.36 0.20 -4.36 16 15 C -0.05 -1.07 9.82 22.28 0.22 -0.85 16 16 C -0.08 -1.71 6.32 22.33 0.14 -1.57 16 17 Cl -0.06 -1.07 28.95 -2.72 -0.08 -1.15 16 18 C -0.06 -1.68 9.61 22.30 0.21 -1.47 16 19 C -0.09 -2.94 6.33 22.41 0.14 -2.80 16 20 Cl -0.07 -2.53 28.19 -2.72 -0.08 -2.61 16 21 C 0.11 4.08 6.56 44.99 0.30 4.38 16 22 C -0.19 -6.93 9.80 30.62 0.30 -6.63 16 23 C -0.22 -8.28 10.36 30.62 0.32 -7.96 16 24 H 0.25 14.06 8.32 -92.71 -0.77 13.28 16 25 H 0.07 2.61 8.07 -2.39 -0.02 2.59 16 26 H 0.07 3.44 5.58 -2.39 -0.01 3.43 16 27 H 0.07 1.96 7.67 -2.39 -0.02 1.94 16 28 H 0.08 2.04 7.65 -2.39 -0.02 2.02 16 29 H 0.17 3.17 6.30 -2.91 -0.02 3.15 16 30 H 0.17 2.26 8.06 -2.91 -0.02 2.24 16 31 H 0.16 3.51 8.06 -2.91 -0.02 3.49 16 32 H 0.12 3.76 8.14 -2.39 -0.02 3.74 16 33 H 0.07 2.96 6.47 -2.38 -0.02 2.95 16 34 H 0.11 3.25 8.14 -2.39 -0.02 3.23 16 35 H 0.10 3.20 8.14 -2.39 -0.02 3.18 16 36 H 0.05 2.44 8.14 -2.39 -0.02 2.42 16 Total: -1.00 -63.06 334.85 4.44 -58.62 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: 1.07 Total: 9.46 kcal Atomic # 6 Polarization: -23.65 SS G_CDS: 3.94 Total: -19.72 kcal Atomic # 7 Polarization: -78.87 SS G_CDS: -1.60 Total: -80.47 kcal Atomic # 8 Polarization: -11.49 SS G_CDS: -0.84 Total: -12.34 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 2.03 Total: 48.19 kcal Atomic # 17 Polarization: -3.60 SS G_CDS: -0.16 Total: -3.75 kcal Total: -63.06 4.44 -58.62 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063516415.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.539 kcal (2) G-P(sol) polarization free energy of solvation -63.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.621 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds