Wall clock time and date at job start Tue Mar 31 2020 10:53:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38240 * 120.01140 * 2 1 4 4 C 1.38217 * 120.01733 * 179.72523 * 3 2 1 5 5 C 1.38262 * 120.02169 * 0.51485 * 4 3 2 6 6 S 1.76209 * 119.99098 * 179.76270 * 5 4 3 7 7 O 1.42106 * 106.40066 * 156.18322 * 6 5 4 8 8 O 1.42098 * 106.40141 * 23.26825 * 6 5 4 9 9 N 1.65600 * 107.21889 * 269.72634 * 6 5 4 10 10 C 1.36928 * 119.99898 * 90.00108 * 9 6 5 11 11 H 1.08003 * 120.00062 * 228.28362 * 10 9 6 12 12 C 1.38818 * 120.00489 * 48.28567 * 10 9 6 13 13 N 1.31616 * 119.99544 * 25.31361 * 12 10 9 14 14 Si 1.86792 * 120.00259 * 205.31337 * 12 10 9 15 15 H 1.48503 * 109.47393 * 0.02562 * 14 12 10 16 16 H 1.48501 * 109.46989 * 119.99964 * 14 12 10 17 17 H 1.48500 * 109.47257 * 239.99585 * 14 12 10 18 18 C 1.46497 * 119.99824 * 269.72256 * 9 6 5 19 19 C 1.52998 * 117.49996 * 188.20031 * 18 9 6 20 20 C 1.53002 * 117.49957 * 119.54087 * 18 9 6 21 21 C 1.38189 * 120.01838 * 359.48990 * 5 4 3 22 22 C 1.38339 * 120.00730 * 179.97438 * 2 1 3 23 23 Cl 1.73603 * 120.01100 * 359.97438 * 22 2 1 24 24 H 1.09005 * 109.46838 * 270.01740 * 1 2 3 25 25 H 1.08997 * 109.47114 * 30.01109 * 1 2 3 26 26 H 1.08996 * 109.47228 * 150.01977 * 1 2 3 27 27 H 1.07995 * 119.98734 * 359.96954 * 3 2 1 28 28 H 1.07993 * 119.99154 * 180.28293 * 4 3 2 29 29 H 0.97000 * 120.00062 * 174.21092 * 13 12 10 30 30 H 1.09000 * 115.55115 * 333.87315 * 18 9 6 31 31 H 1.09001 * 117.49818 * 359.97438 * 19 18 9 32 32 H 1.08994 * 117.50122 * 145.01971 * 19 18 9 33 33 H 1.08992 * 117.49901 * 214.98072 * 20 18 9 34 34 H 1.09007 * 117.49620 * 359.97438 * 20 18 9 35 35 H 1.08002 * 120.01116 * 180.23182 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1971 0.0000 4 6 3.5806 1.1972 0.0057 5 6 4.2725 0.0002 0.0007 6 16 6.0346 0.0014 0.0017 7 8 6.4363 -1.2480 0.5468 8 8 6.4347 1.2515 0.5461 9 7 6.5257 0.0013 -1.5798 10 6 6.7280 1.1871 -2.2339 11 1 6.3010 1.3430 -3.2136 12 6 7.4818 2.1889 -1.6379 13 7 8.3897 1.8810 -0.7362 14 14 7.2076 3.9737 -2.1156 15 1 6.1379 4.0526 -3.1427 16 1 6.8004 4.7500 -0.9170 17 1 8.4660 4.5377 -2.6665 18 6 6.7496 -1.2675 -2.2771 19 6 7.3839 -1.2067 -3.6681 20 6 5.9001 -1.5514 -3.5176 21 6 3.5825 -1.1971 0.0006 22 6 2.1988 -1.1980 0.0005 23 17 1.3313 -2.7017 0.0019 24 1 -0.3633 0.0003 1.0277 25 1 -0.3633 0.8899 -0.5140 26 1 -0.3633 -0.8901 -0.5135 27 1 1.6584 2.1323 -0.0005 28 1 4.1203 2.1326 0.0104 29 1 8.9737 2.5693 -0.3812 30 1 7.0106 -2.1136 -1.6415 31 1 7.6342 -0.2227 -4.0645 32 1 8.0619 -2.0130 -3.9477 33 1 5.6026 -2.5842 -3.6982 34 1 5.1743 -0.7942 -3.8145 35 1 4.1231 -2.1321 0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063518839.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:53:19 Heat of formation + Delta-G solvation = -36.970585 kcal Electronic energy + Delta-G solvation = -22618.827032 eV Core-core repulsion = 19156.269458 eV Total energy + Delta-G solvation = -3462.557574 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 315.048 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.39583 -38.78391 -37.68857 -37.50046 -36.16063 -35.09343 -33.94894 -32.45569 -31.83520 -28.11378 -26.82503 -23.91265 -23.05126 -22.87828 -22.20589 -20.76760 -19.42218 -18.12494 -17.70172 -17.08284 -16.90206 -16.41667 -16.00224 -15.72233 -15.53125 -15.16096 -15.12089 -14.75102 -14.09762 -13.59772 -13.41904 -13.37022 -13.14961 -13.09120 -12.95137 -12.65393 -12.57384 -12.52203 -12.34646 -12.26361 -12.13808 -12.11186 -11.96835 -11.64794 -11.30496 -10.97384 -10.53835 -10.08060 -9.82203 -9.32431 -8.43152 -6.08174 -0.25683 0.08908 0.12849 1.00991 1.48553 1.54561 1.64750 2.25622 2.37075 2.83030 3.00004 3.21129 3.47081 3.63482 3.75177 3.92873 4.08585 4.19118 4.28818 4.36955 4.39849 4.51982 4.62385 4.72020 4.74506 4.85738 4.94868 4.95665 5.14548 5.22336 5.26159 5.26755 5.48198 5.54455 5.71797 5.79411 6.28580 7.01239 7.43967 8.62803 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.015758 B = 0.005922 C = 0.005184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.478516 B = 4726.905424 C = 5399.977753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.040 4.040 3 C -0.128 4.128 4 C -0.032 4.032 5 C -0.673 4.673 6 S 2.565 3.435 7 O -1.041 7.041 8 O -0.977 6.977 9 N -0.797 5.797 10 C -0.288 4.288 11 H 0.095 0.905 12 C 0.020 3.980 13 N -0.819 5.819 14 Si 0.971 3.029 15 H -0.241 1.241 16 H -0.286 1.286 17 H -0.268 1.268 18 C 0.052 3.948 19 C -0.151 4.151 20 C -0.184 4.184 21 C -0.034 4.034 22 C -0.068 4.068 23 Cl -0.056 7.056 24 H 0.092 0.908 25 H 0.096 0.904 26 H 0.078 0.922 27 H 0.171 0.829 28 H 0.132 0.868 29 H 0.279 0.721 30 H 0.109 0.891 31 H 0.097 0.903 32 H 0.111 0.889 33 H 0.113 0.887 34 H 0.089 0.911 35 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.391 -2.066 -4.173 14.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.041 4.041 3 C -0.146 4.146 4 C -0.052 4.052 5 C -0.754 4.754 6 S 2.668 3.332 7 O -1.031 7.031 8 O -0.966 6.966 9 N -0.619 5.619 10 C -0.434 4.434 11 H 0.113 0.887 12 C -0.195 4.195 13 N -0.455 5.455 14 Si 0.794 3.206 15 H -0.164 1.164 16 H -0.212 1.212 17 H -0.193 1.193 18 C -0.056 4.056 19 C -0.191 4.191 20 C -0.224 4.224 21 C -0.054 4.054 22 C -0.096 4.096 23 Cl -0.027 7.027 24 H 0.111 0.889 25 H 0.115 0.885 26 H 0.097 0.903 27 H 0.188 0.812 28 H 0.150 0.850 29 H 0.089 0.911 30 H 0.127 0.873 31 H 0.115 0.885 32 H 0.129 0.871 33 H 0.132 0.868 34 H 0.107 0.893 35 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -13.021 -2.302 -3.021 13.563 hybrid contribution -0.126 0.471 0.196 0.525 sum -13.146 -1.831 -2.826 13.571 Atomic orbital electron populations 1.21032 0.87121 1.04982 1.04335 1.20379 0.98664 0.90619 0.94458 1.21503 0.93110 0.98870 1.01164 1.21123 0.95541 0.96634 0.91857 1.32127 1.31309 0.98494 1.13460 1.09991 0.74464 0.71916 0.76826 1.93247 1.83040 1.46544 1.80232 1.93387 1.80483 1.43963 1.78762 1.52261 1.69922 1.08282 1.31437 1.19275 1.29458 0.91068 1.03621 0.88700 1.26596 0.92699 1.05065 0.95140 1.69920 1.14013 1.36987 1.24573 0.85218 0.79700 0.77250 0.78475 1.16404 1.21190 1.19322 1.21614 1.06850 0.87613 0.89537 1.23153 0.95559 1.03536 0.96803 1.23373 0.94235 1.02658 1.02118 1.20735 0.92992 0.97335 0.94293 1.21005 0.91860 0.88035 1.08652 1.98326 1.76075 1.31303 1.97031 0.88909 0.88497 0.90270 0.81183 0.85007 0.91128 0.87291 0.88459 0.87077 0.86841 0.89291 0.85147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.10 9.62 71.23 0.68 -1.42 16 2 C -0.04 -1.09 5.88 -19.84 -0.12 -1.21 16 3 C -0.13 -3.67 9.70 22.27 0.22 -3.45 16 4 C -0.03 -1.22 9.52 22.27 0.21 -1.00 16 5 C -0.67 -28.75 5.97 22.26 0.13 -28.62 16 6 S 2.56 131.54 5.45 -56.49 -0.31 131.23 16 7 O -1.04 -57.48 16.06 -128.00 -2.06 -59.54 16 8 O -0.98 -55.76 13.27 -128.00 -1.70 -57.46 16 9 N -0.80 -38.46 3.05 -322.95 -0.99 -39.45 16 10 C -0.29 -13.92 7.69 84.04 0.65 -13.27 16 11 H 0.10 4.25 7.72 -2.91 -0.02 4.22 16 12 C 0.02 0.99 4.00 84.86 0.34 1.33 16 13 N -0.82 -45.64 11.52 21.65 0.25 -45.39 16 14 Si 0.97 39.35 29.63 68.60 2.03 41.38 16 15 H -0.24 -8.78 7.11 99.48 0.71 -8.08 16 16 H -0.29 -12.12 7.11 99.48 0.71 -11.42 16 17 H -0.27 -10.32 7.11 99.48 0.71 -9.61 16 18 C 0.05 2.17 6.38 44.99 0.29 2.45 16 19 C -0.15 -5.22 9.84 30.62 0.30 -4.92 16 20 C -0.18 -6.02 10.29 30.62 0.31 -5.71 16 21 C -0.03 -1.30 9.31 22.29 0.21 -1.09 16 22 C -0.07 -2.16 6.32 22.33 0.14 -2.02 16 23 Cl -0.06 -1.48 27.30 -2.72 -0.07 -1.55 16 24 H 0.09 1.41 8.14 -2.38 -0.02 1.39 16 25 H 0.10 1.29 8.09 -2.39 -0.02 1.27 16 26 H 0.08 1.36 6.90 -2.39 -0.02 1.34 16 27 H 0.17 3.46 8.06 -2.91 -0.02 3.44 16 28 H 0.13 5.10 7.61 -2.91 -0.02 5.08 16 29 H 0.28 14.70 8.32 -92.71 -0.77 13.93 16 30 H 0.11 4.64 7.38 -2.39 -0.02 4.62 16 31 H 0.10 3.59 6.96 -2.39 -0.02 3.57 16 32 H 0.11 3.19 8.14 -2.39 -0.02 3.17 16 33 H 0.11 3.03 8.14 -2.39 -0.02 3.02 16 34 H 0.09 2.97 8.14 -2.38 -0.02 2.95 16 35 H 0.13 5.10 7.62 -2.91 -0.02 5.08 16 Total: -1.00 -67.37 323.34 1.64 -65.73 By element: Atomic # 1 Polarization: 22.86 SS G_CDS: 1.11 Total: 23.97 kcal Atomic # 6 Polarization: -62.30 SS G_CDS: 3.37 Total: -58.93 kcal Atomic # 7 Polarization: -84.10 SS G_CDS: -0.74 Total: -84.84 kcal Atomic # 8 Polarization: -113.24 SS G_CDS: -3.75 Total: -117.00 kcal Atomic # 14 Polarization: 39.35 SS G_CDS: 2.03 Total: 41.38 kcal Atomic # 16 Polarization: 131.54 SS G_CDS: -0.31 Total: 131.23 kcal Atomic # 17 Polarization: -1.48 SS G_CDS: -0.07 Total: -1.55 kcal Total: -67.37 1.64 -65.73 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063518839.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.763 kcal (2) G-P(sol) polarization free energy of solvation -67.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds