Wall clock time and date at job start Tue Mar 31 2020 11:21:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 120.00270 * 2 1 4 4 H 1.48500 * 109.46971 * 270.00083 * 3 2 1 5 5 H 1.48505 * 109.46977 * 29.99620 * 3 2 1 6 6 H 1.48493 * 109.47395 * 149.99515 * 3 2 1 7 7 C 1.37878 * 119.99703 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99695 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00161 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46983 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47273 * 180.02562 * 10 9 7 12 12 N 1.46499 * 109.47555 * 179.97438 * 11 10 9 13 13 C 1.34777 * 120.00199 * 180.02562 * 12 11 10 14 14 O 1.21283 * 119.99750 * 359.97438 * 13 12 11 15 15 C 1.50702 * 119.99928 * 180.27479 * 13 12 11 16 16 C 1.50700 * 109.46869 * 179.72354 * 15 13 12 17 17 C 1.38266 * 119.97806 * 269.71974 * 16 15 13 18 18 C 1.38206 * 120.03765 * 179.77096 * 17 16 15 19 19 C 1.38347 * 119.99606 * 0.50738 * 18 17 16 20 20 Cl 1.73602 * 120.01713 * 179.72717 * 19 18 17 21 21 C 1.38447 * 119.96347 * 359.74726 * 19 18 17 22 22 Cl 1.73599 * 120.01568 * 180.02562 * 21 19 18 23 23 C 1.38204 * 119.97954 * 90.00188 * 16 15 13 24 24 H 0.97003 * 120.00173 * 359.97438 * 1 2 3 25 25 H 1.08992 * 109.47217 * 60.00007 * 9 7 2 26 26 H 1.08997 * 109.47150 * 299.99540 * 9 7 2 27 27 H 1.08998 * 109.47307 * 59.99537 * 10 9 7 28 28 H 1.09005 * 109.46653 * 299.99472 * 10 9 7 29 29 H 1.08998 * 109.47382 * 59.99521 * 11 10 9 30 30 H 1.09002 * 109.47216 * 299.99958 * 11 10 9 31 31 H 0.97000 * 119.99484 * 359.97438 * 12 11 10 32 32 H 1.09004 * 109.46965 * 299.72211 * 15 13 12 33 33 H 1.08994 * 109.46990 * 59.72065 * 15 13 12 34 34 H 1.08002 * 119.98400 * 0.02562 * 17 16 15 35 35 H 1.07997 * 120.00293 * 180.25702 * 18 17 16 36 36 H 1.07999 * 120.00293 * 359.94871 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0018 11 6 1.4802 -4.9871 0.0012 12 7 2.4322 -6.1007 0.0018 13 6 1.9829 -7.3714 0.0009 14 8 0.7905 -7.5929 0.0000 15 6 2.9622 -8.5168 0.0078 16 6 2.2086 -9.8219 0.0120 17 6 1.8659 -10.4178 1.2117 18 6 1.1707 -11.6123 1.2170 19 6 0.8264 -12.2176 0.0216 20 17 -0.0407 -13.7215 0.0277 21 6 1.1742 -11.6235 -1.1796 22 17 0.7424 -12.3815 -2.6805 23 6 1.8656 -10.4252 -1.1831 24 1 -0.4850 0.8401 0.0004 25 1 0.6247 -2.5571 -0.8896 26 1 0.6240 -2.5568 0.8903 27 1 2.8712 -3.6040 0.8922 28 1 2.8725 -3.6047 -0.8878 29 1 0.8545 -5.0450 -0.8894 30 1 0.8526 -5.0448 0.8905 31 1 3.3858 -5.9234 0.0021 32 1 3.5905 -8.4630 -0.8813 33 1 3.5871 -8.4551 0.8986 34 1 2.1380 -9.9476 2.1451 35 1 0.8996 -12.0752 2.1544 36 1 2.1369 -9.9610 -2.1198 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070940555.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:46 Heat of formation + Delta-G solvation = -50.818969 kcal Electronic energy + Delta-G solvation = -19994.055501 eV Core-core repulsion = 16528.853710 eV Total energy + Delta-G solvation = -3465.201791 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 315.053 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.30959 -39.09544 -36.89481 -36.81936 -35.47100 -33.39757 -32.97483 -31.30138 -31.19460 -28.29045 -26.37573 -23.38912 -23.28747 -22.06258 -20.79389 -19.96766 -17.68071 -16.97306 -16.53648 -16.52589 -16.06368 -15.36005 -15.31453 -14.49344 -14.37450 -14.32309 -14.03515 -13.93626 -13.52160 -12.63682 -12.33804 -12.23756 -12.18179 -11.97509 -11.85797 -11.64856 -11.59107 -11.31292 -11.16344 -10.93324 -10.78158 -10.62911 -10.00244 -9.91500 -9.46215 -9.27507 -9.16166 -8.91176 -8.86013 -8.40437 -6.04893 -4.08281 0.59195 0.76752 1.52882 1.89395 2.66478 2.97319 3.28454 3.34964 3.37261 3.46790 4.19455 4.26301 4.41472 4.68428 4.71884 4.81370 4.90399 5.08343 5.19554 5.30881 5.39389 5.55376 5.65646 5.68715 5.72051 6.01036 6.10625 6.22864 6.40787 6.54309 6.76763 6.95284 7.59667 7.61003 7.71851 7.93485 8.28623 8.34901 8.98406 9.56098 11.06351 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.033453 B = 0.001925 C = 0.001905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.791719 B =14539.379557 C =14696.091112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.056 3.944 3 Si 0.894 3.106 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.523 4.523 8 H 0.055 0.945 9 C 0.023 3.977 10 C -0.121 4.121 11 C 0.116 3.884 12 N -0.726 5.726 13 C 0.507 3.493 14 O -0.535 6.535 15 C -0.106 4.106 16 C -0.044 4.044 17 C -0.088 4.088 18 C -0.097 4.097 19 C -0.033 4.033 20 Cl -0.054 7.054 21 C -0.028 4.028 22 Cl -0.051 7.051 23 C -0.085 4.085 24 H 0.261 0.739 25 H 0.019 0.981 26 H 0.019 0.981 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.399 0.601 32 H 0.107 0.893 33 H 0.109 0.891 34 H 0.138 0.862 35 H 0.143 0.857 36 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.118 -27.089 0.329 28.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.561 4.561 8 H 0.074 0.926 9 C -0.014 4.014 10 C -0.159 4.159 11 C -0.006 4.006 12 N -0.377 5.377 13 C 0.292 3.708 14 O -0.412 6.412 15 C -0.146 4.146 16 C -0.045 4.045 17 C -0.107 4.107 18 C -0.116 4.116 19 C -0.061 4.061 20 Cl -0.025 7.025 21 C -0.056 4.056 22 Cl -0.022 7.022 23 C -0.104 4.104 24 H 0.071 0.929 25 H 0.037 0.963 26 H 0.037 0.963 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.233 0.767 32 H 0.126 0.874 33 H 0.127 0.873 34 H 0.156 0.844 35 H 0.161 0.839 36 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 5.961 -27.318 0.193 27.961 hybrid contribution 0.711 0.931 -0.161 1.182 sum 6.672 -26.387 0.032 27.218 Atomic orbital electron populations 1.69965 1.06066 1.26732 1.50464 1.25039 0.94871 0.99346 0.95261 0.86574 0.79780 0.83402 0.78110 1.20645 1.21195 1.19896 1.21194 0.92976 0.90924 1.51040 0.92639 1.19031 0.93858 0.90877 0.97666 1.21888 0.99765 0.93326 1.00876 1.21659 0.91867 0.85074 1.02039 1.46211 1.10887 1.05835 1.74722 1.20369 0.89549 0.83888 0.76992 1.90752 1.16693 1.84690 1.49042 1.20740 0.97743 0.90170 1.05970 1.19340 0.97670 0.94849 0.92631 1.21088 0.96989 0.94346 0.98250 1.20997 0.98361 0.95688 0.96515 1.20768 1.00895 0.90812 0.93596 1.98387 1.74828 1.30395 1.98882 1.20691 1.02416 0.95872 0.86607 1.98391 1.91746 1.81115 1.30985 1.20878 0.97413 0.92878 0.99191 0.92893 0.96283 0.96283 0.92700 0.92713 0.91755 0.91743 0.76725 0.87439 0.87306 0.84383 0.83935 0.84074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.57 13.29 55.43 0.74 -25.83 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.52 -14.36 9.11 -34.44 -0.31 -14.67 16 8 H 0.06 1.46 7.74 -52.49 -0.41 1.06 16 9 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 10 C -0.12 -2.25 5.27 -26.73 -0.14 -2.39 16 11 C 0.12 1.93 5.67 -4.04 -0.02 1.91 16 12 N -0.73 -9.09 5.56 -60.29 -0.33 -9.43 16 13 C 0.51 6.43 7.82 -10.98 -0.09 6.34 16 14 O -0.54 -9.28 16.03 5.55 0.09 -9.19 16 15 C -0.11 -0.83 5.83 -29.03 -0.17 -1.00 16 16 C -0.04 -0.41 4.37 -104.62 -0.46 -0.87 16 17 C -0.09 -0.76 9.70 -39.58 -0.38 -1.15 16 18 C -0.10 -0.84 9.83 -39.55 -0.39 -1.23 16 19 C -0.03 -0.33 6.32 -39.46 -0.25 -0.58 16 20 Cl -0.05 -0.51 27.96 -51.86 -1.45 -1.96 16 21 C -0.03 -0.30 6.32 -39.46 -0.25 -0.55 16 22 Cl -0.05 -0.52 27.96 -51.86 -1.45 -1.97 16 23 C -0.08 -0.84 9.48 -39.55 -0.38 -1.21 16 24 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 25 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 28 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 29 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 30 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.40 3.74 8.47 -40.82 -0.35 3.40 16 32 H 0.11 0.59 8.09 -51.93 -0.42 0.17 16 33 H 0.11 0.56 8.08 -51.93 -0.42 0.14 16 34 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16 35 H 0.14 0.93 8.06 -52.49 -0.42 0.51 16 36 H 0.14 1.21 8.06 -52.49 -0.42 0.78 16 LS Contribution 345.54 15.07 5.21 5.21 Total: -1.00 -32.80 345.54 -9.83 -42.63 By element: Atomic # 1 Polarization: 2.35 SS G_CDS: -4.53 Total: -2.18 kcal Atomic # 6 Polarization: -10.39 SS G_CDS: -3.07 Total: -13.46 kcal Atomic # 7 Polarization: -35.66 SS G_CDS: 0.40 Total: -35.26 kcal Atomic # 8 Polarization: -9.28 SS G_CDS: 0.09 Total: -9.19 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 17 Polarization: -1.03 SS G_CDS: -2.90 Total: -3.93 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -32.80 -9.83 -42.63 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070940555.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.188 kcal (2) G-P(sol) polarization free energy of solvation -32.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds