Wall clock time and date at job start Tue Mar 31 2020 11:21:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 120.00270 * 2 1 4 4 H 1.48500 * 109.46971 * 270.00083 * 3 2 1 5 5 H 1.48505 * 109.46977 * 29.99620 * 3 2 1 6 6 H 1.48493 * 109.47395 * 149.99515 * 3 2 1 7 7 C 1.37878 * 119.99703 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99695 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00161 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46983 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47273 * 180.02562 * 10 9 7 12 12 N 1.46499 * 109.47555 * 179.97438 * 11 10 9 13 13 C 1.34777 * 120.00199 * 180.02562 * 12 11 10 14 14 O 1.21283 * 119.99750 * 359.97438 * 13 12 11 15 15 C 1.50702 * 119.99928 * 180.27479 * 13 12 11 16 16 C 1.50700 * 109.46869 * 179.72354 * 15 13 12 17 17 C 1.38266 * 119.97806 * 269.71974 * 16 15 13 18 18 C 1.38206 * 120.03765 * 179.77096 * 17 16 15 19 19 C 1.38347 * 119.99606 * 0.50738 * 18 17 16 20 20 Cl 1.73602 * 120.01713 * 179.72717 * 19 18 17 21 21 C 1.38447 * 119.96347 * 359.74726 * 19 18 17 22 22 Cl 1.73599 * 120.01568 * 180.02562 * 21 19 18 23 23 C 1.38204 * 119.97954 * 90.00188 * 16 15 13 24 24 H 0.97003 * 120.00173 * 359.97438 * 1 2 3 25 25 H 1.08992 * 109.47217 * 60.00007 * 9 7 2 26 26 H 1.08997 * 109.47150 * 299.99540 * 9 7 2 27 27 H 1.08998 * 109.47307 * 59.99537 * 10 9 7 28 28 H 1.09005 * 109.46653 * 299.99472 * 10 9 7 29 29 H 1.08998 * 109.47382 * 59.99521 * 11 10 9 30 30 H 1.09002 * 109.47216 * 299.99958 * 11 10 9 31 31 H 0.97000 * 119.99484 * 359.97438 * 12 11 10 32 32 H 1.09004 * 109.46965 * 299.72211 * 15 13 12 33 33 H 1.08994 * 109.46990 * 59.72065 * 15 13 12 34 34 H 1.08002 * 119.98400 * 0.02562 * 17 16 15 35 35 H 1.07997 * 120.00293 * 180.25702 * 18 17 16 36 36 H 1.07999 * 120.00293 * 359.94871 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0018 11 6 1.4802 -4.9871 0.0012 12 7 2.4322 -6.1007 0.0018 13 6 1.9829 -7.3714 0.0009 14 8 0.7905 -7.5929 0.0000 15 6 2.9622 -8.5168 0.0078 16 6 2.2086 -9.8219 0.0120 17 6 1.8659 -10.4178 1.2117 18 6 1.1707 -11.6123 1.2170 19 6 0.8264 -12.2176 0.0216 20 17 -0.0407 -13.7215 0.0277 21 6 1.1742 -11.6235 -1.1796 22 17 0.7424 -12.3815 -2.6805 23 6 1.8656 -10.4252 -1.1831 24 1 -0.4850 0.8401 0.0004 25 1 0.6247 -2.5571 -0.8896 26 1 0.6240 -2.5568 0.8903 27 1 2.8712 -3.6040 0.8922 28 1 2.8725 -3.6047 -0.8878 29 1 0.8545 -5.0450 -0.8894 30 1 0.8526 -5.0448 0.8905 31 1 3.3858 -5.9234 0.0021 32 1 3.5905 -8.4630 -0.8813 33 1 3.5871 -8.4551 0.8986 34 1 2.1380 -9.9476 2.1451 35 1 0.8996 -12.0752 2.1544 36 1 2.1369 -9.9610 -2.1198 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070940555.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:46 Heat of formation + Delta-G solvation = -70.236663 kcal Electronic energy + Delta-G solvation = -19994.897516 eV Core-core repulsion = 16528.853710 eV Total energy + Delta-G solvation = -3466.043806 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 315.053 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.14859 -40.00345 -37.64454 -37.56180 -36.89906 -35.16292 -33.82061 -32.87752 -31.93393 -29.40097 -27.85089 -24.96943 -24.02876 -22.96442 -22.28143 -21.13896 -18.60512 -18.33696 -17.90726 -17.27427 -17.02443 -16.54714 -16.53461 -16.24132 -15.42257 -15.15592 -14.90358 -14.75314 -14.53009 -14.20387 -13.74710 -13.66306 -13.17018 -12.93319 -12.90200 -12.74742 -12.53220 -12.49429 -12.36264 -12.31229 -12.01920 -11.90050 -11.65086 -11.57394 -11.23140 -10.86089 -10.55030 -10.04777 -9.96978 -9.64532 -8.19063 -6.30549 -0.11831 0.08618 0.79363 1.17415 1.42499 1.43664 1.54608 1.69583 2.14534 2.42224 2.59678 3.14823 3.52458 3.62039 3.98309 4.07325 4.12223 4.19420 4.24232 4.26854 4.51939 4.57891 4.64323 4.78096 4.88701 4.96927 5.01710 5.05353 5.19282 5.35025 5.47457 5.55467 5.59606 5.72117 5.85280 6.22770 6.64836 6.87709 7.33659 7.39297 8.93003 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.033453 B = 0.001925 C = 0.001905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.791719 B =14539.379557 C =14696.091112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.006 4.006 3 Si 0.967 3.033 4 H -0.273 1.273 5 H -0.286 1.286 6 H -0.259 1.259 7 C -0.539 4.539 8 H 0.068 0.932 9 C 0.022 3.978 10 C -0.101 4.101 11 C 0.130 3.870 12 N -0.714 5.714 13 C 0.506 3.494 14 O -0.587 6.587 15 C -0.093 4.093 16 C -0.055 4.055 17 C -0.090 4.090 18 C -0.100 4.100 19 C -0.047 4.047 20 Cl -0.056 7.056 21 C -0.045 4.045 22 Cl -0.058 7.058 23 C -0.095 4.095 24 H 0.263 0.737 25 H -0.010 1.010 26 H -0.009 1.009 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.044 0.956 30 H 0.047 0.953 31 H 0.419 0.581 32 H 0.138 0.862 33 H 0.146 0.854 34 H 0.161 0.839 35 H 0.162 0.838 36 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.866 -27.151 0.940 28.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.203 4.203 3 Si 0.792 3.208 4 H -0.199 1.199 5 H -0.212 1.212 6 H -0.183 1.183 7 C -0.577 4.577 8 H 0.086 0.914 9 C -0.016 4.016 10 C -0.139 4.139 11 C 0.006 3.994 12 N -0.367 5.367 13 C 0.294 3.706 14 O -0.467 6.467 15 C -0.132 4.132 16 C -0.056 4.056 17 C -0.108 4.108 18 C -0.119 4.119 19 C -0.074 4.074 20 Cl -0.027 7.027 21 C -0.073 4.073 22 Cl -0.029 7.029 23 C -0.114 4.114 24 H 0.071 0.929 25 H 0.008 0.992 26 H 0.009 0.991 27 H 0.089 0.911 28 H 0.087 0.913 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.256 0.744 32 H 0.156 0.844 33 H 0.164 0.836 34 H 0.179 0.821 35 H 0.180 0.820 36 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 8.768 -27.398 0.803 28.778 hybrid contribution -0.185 0.911 -0.339 0.989 sum 8.583 -26.487 0.464 27.846 Atomic orbital electron populations 1.70116 1.07982 1.27765 1.51785 1.26047 0.95749 1.03639 0.94872 0.85411 0.78722 0.78266 0.78426 1.19886 1.21191 1.18263 1.21695 0.93798 0.91967 1.50264 0.91374 1.18959 0.94536 0.93193 0.94919 1.21587 0.98339 0.91735 1.02242 1.21172 0.92072 0.85808 1.00373 1.45965 1.11222 1.04945 1.74524 1.21224 0.89681 0.84549 0.75171 1.90742 1.19337 1.85375 1.51255 1.20786 0.96551 0.86685 1.09227 1.19594 0.97895 0.95480 0.92602 1.21443 0.96205 0.94124 0.99076 1.21296 0.97942 0.95811 0.96830 1.20976 1.01322 0.91034 0.94086 1.98380 1.74915 1.30526 1.98898 1.20871 1.03291 0.96495 0.86616 1.98381 1.91868 1.81262 1.31347 1.21091 0.97430 0.92805 1.00038 0.92864 0.99201 0.99088 0.91137 0.91281 0.93708 0.93468 0.74412 0.84424 0.83647 0.82102 0.82039 0.83301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.84 13.29 21.45 0.28 -56.56 16 2 C -0.01 -0.32 5.46 84.65 0.46 0.15 16 3 Si 0.97 43.16 29.54 68.60 2.03 45.19 16 4 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 5 H -0.29 -12.67 7.11 99.48 0.71 -11.96 16 6 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 7 C -0.54 -29.50 9.11 25.60 0.23 -29.27 16 8 H 0.07 3.47 7.74 -2.91 -0.02 3.45 16 9 C 0.02 1.10 4.97 29.85 0.15 1.25 16 10 C -0.10 -3.67 5.27 30.59 0.16 -3.51 16 11 C 0.13 4.28 5.67 86.38 0.49 4.77 16 12 N -0.71 -16.27 5.56 -463.06 -2.57 -18.84 16 13 C 0.51 11.76 7.82 87.66 0.69 12.44 16 14 O -0.59 -20.06 16.03 -3.04 -0.05 -20.11 16 15 C -0.09 -1.11 5.83 29.10 0.17 -0.94 16 16 C -0.05 -0.89 4.37 -19.87 -0.09 -0.98 16 17 C -0.09 -1.35 9.70 22.27 0.22 -1.13 16 18 C -0.10 -1.59 9.83 22.29 0.22 -1.37 16 19 C -0.05 -0.90 6.32 22.35 0.14 -0.76 16 20 Cl -0.06 -1.05 27.96 -2.72 -0.08 -1.12 16 21 C -0.05 -0.92 6.32 22.35 0.14 -0.78 16 22 Cl -0.06 -1.16 27.96 -2.72 -0.08 -1.24 16 23 C -0.09 -1.75 9.48 22.29 0.21 -1.54 16 24 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 25 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 26 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 27 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 28 H 0.07 2.32 8.14 -2.38 -0.02 2.30 16 29 H 0.04 1.64 8.14 -2.39 -0.02 1.63 16 30 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.42 6.31 8.47 -92.71 -0.79 5.52 16 32 H 0.14 0.88 8.09 -2.38 -0.02 0.86 16 33 H 0.15 0.74 8.08 -2.39 -0.02 0.72 16 34 H 0.16 1.57 8.06 -2.91 -0.02 1.55 16 35 H 0.16 1.81 8.06 -2.91 -0.02 1.79 16 36 H 0.15 2.36 8.06 -2.91 -0.02 2.34 16 Total: -1.00 -73.29 345.54 3.05 -70.25 By element: Atomic # 1 Polarization: 3.81 SS G_CDS: 0.32 Total: 4.12 kcal Atomic # 6 Polarization: -24.87 SS G_CDS: 3.19 Total: -21.68 kcal Atomic # 7 Polarization: -73.11 SS G_CDS: -2.29 Total: -75.40 kcal Atomic # 8 Polarization: -20.06 SS G_CDS: -0.05 Total: -20.11 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Atomic # 17 Polarization: -2.21 SS G_CDS: -0.15 Total: -2.36 kcal Total: -73.29 3.05 -70.25 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070940555.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.008 kcal (2) G-P(sol) polarization free energy of solvation -73.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds