Wall clock time and date at job start Tue Mar 31 2020 10:26:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46890 * 109.47180 * 2 1 4 4 C 1.46900 * 111.00325 * 71.49832 * 3 2 1 5 5 C 1.50701 * 109.46942 * 285.08066 * 4 3 2 6 6 H 1.07997 * 119.99999 * 358.00097 * 5 4 3 7 7 C 1.37881 * 119.99757 * 178.00427 * 5 4 3 8 8 N 1.31517 * 119.99899 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 120.00048 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.47153 * 59.99603 * 9 7 5 11 11 H 1.48495 * 109.47258 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.46850 * 300.00334 * 9 7 5 13 13 C 1.46901 * 111.00198 * 195.45307 * 3 2 1 14 14 C 1.50706 * 109.46883 * 66.04630 * 13 3 2 15 15 C 1.38465 * 120.01816 * 90.00427 * 14 13 3 16 16 F 1.35096 * 120.01958 * 0.02562 * 15 14 13 17 17 C 1.38439 * 119.95488 * 180.02562 * 15 14 13 18 18 C 1.38220 * 120.00132 * 359.97438 * 17 15 14 19 19 C 1.38210 * 120.03243 * 0.02562 * 18 17 15 20 20 C 1.38263 * 120.01497 * 269.72247 * 14 13 3 21 21 Br 1.89108 * 119.99907 * 359.97438 * 20 14 13 22 22 H 1.09000 * 109.46891 * 50.54811 * 1 2 3 23 23 H 1.09004 * 109.46701 * 170.54393 * 1 2 3 24 24 H 1.08999 * 109.47253 * 290.54395 * 1 2 3 25 25 H 1.09004 * 109.46910 * 239.99588 * 2 1 3 26 26 H 1.09000 * 109.47198 * 120.00138 * 2 1 3 27 27 H 1.08997 * 109.46814 * 45.07715 * 4 3 2 28 28 H 1.08997 * 109.47555 * 165.08167 * 4 3 2 29 29 H 0.97004 * 119.99436 * 179.97438 * 8 7 5 30 30 H 1.08997 * 109.47271 * 186.04144 * 13 3 2 31 31 H 1.09000 * 109.47344 * 306.04721 * 13 3 2 32 32 H 1.08003 * 119.99894 * 179.97438 * 17 15 14 33 33 H 1.07993 * 119.98966 * 180.02562 * 18 17 15 34 34 H 1.08002 * 119.98121 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.7849 2.0264 1.3005 5 6 0.3233 2.3680 1.4355 6 1 -0.3568 2.1617 0.6224 7 6 -0.1455 2.9441 2.5971 8 7 0.6827 3.1950 3.5875 9 14 -1.9573 3.3670 2.7648 10 1 -2.7691 2.1315 2.6240 11 1 -2.2032 3.9710 4.0989 12 1 -2.3400 4.3341 1.7048 13 6 3.4414 1.4406 -0.3654 14 6 3.6097 1.0009 -1.7970 15 6 3.5490 1.9325 -2.8196 16 9 3.3394 3.2363 -2.5345 17 6 3.7032 1.5270 -4.1342 18 6 3.9182 0.1930 -4.4253 19 6 3.9787 -0.7367 -3.4045 20 6 3.8306 -0.3323 -2.0896 21 35 3.9224 -1.6042 -0.6931 22 1 -0.3633 0.6530 -0.7935 23 1 -0.3633 -1.0138 -0.1688 24 1 -0.3634 0.3606 0.9623 25 1 1.8933 -0.5139 -0.8900 26 1 1.8934 -0.5139 0.8900 27 1 2.0737 1.3438 2.0997 28 1 2.3788 2.9378 1.3687 29 1 0.3529 3.6007 4.4045 30 1 3.8054 2.4620 -0.2540 31 1 4.0106 0.7787 0.2873 32 1 3.6556 2.2530 -4.9324 33 1 4.0389 -0.1231 -5.4509 34 1 4.1472 -1.7788 -3.6328 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093178329.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:26:54 Heat of formation + Delta-G solvation = -3.091543 kcal Electronic energy + Delta-G solvation = -18846.579980 eV Core-core repulsion = 15740.683744 eV Total energy + Delta-G solvation = -3105.896236 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 315.033 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -48.69247 -39.38383 -36.82040 -33.01154 -32.14888 -31.52900 -29.62660 -29.14017 -27.23267 -24.76939 -22.72704 -22.15075 -21.57650 -19.82212 -17.38346 -16.58663 -16.48521 -15.74210 -15.61994 -14.87794 -14.48613 -14.14467 -13.83422 -13.65093 -13.27054 -12.93835 -12.64682 -12.33142 -12.04487 -11.59270 -11.42150 -11.17311 -11.12372 -10.85402 -10.62916 -10.52271 -10.46559 -10.14576 -9.95599 -9.39340 -9.00100 -8.74882 -8.65511 -8.33428 -7.22350 -5.97045 -3.95167 0.90500 1.09361 1.55966 3.36609 3.37599 3.40635 3.44086 4.30122 4.46556 4.63261 4.79295 4.82577 5.08702 5.19737 5.37318 5.41950 5.67525 5.85356 5.97244 5.99856 6.09971 6.13395 6.20389 6.35319 6.45216 6.64904 6.73336 6.97255 7.21248 7.38153 7.44703 7.87526 8.14463 8.23646 8.57791 9.09997 9.65721 11.13704 Molecular weight = 315.03amu Principal moments of inertia in cm(-1) A = 0.018128 B = 0.005382 C = 0.004625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.225381 B = 5201.318445 C = 6052.952286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.059 3.941 3 N -0.525 5.525 4 C 0.194 3.806 5 C -0.501 4.501 6 H 0.073 0.927 7 C 0.053 3.947 8 N -0.901 5.901 9 Si 0.894 3.106 10 H -0.277 1.277 11 H -0.289 1.289 12 H -0.277 1.277 13 C 0.079 3.921 14 C -0.069 4.069 15 C 0.125 3.875 16 F -0.124 7.124 17 C -0.143 4.143 18 C -0.095 4.095 19 C -0.106 4.106 20 C -0.066 4.066 21 Br -0.032 7.032 22 H 0.051 0.949 23 H 0.029 0.971 24 H 0.088 0.912 25 H 0.054 0.946 26 H 0.027 0.973 27 H -0.004 1.004 28 H 0.026 0.974 29 H 0.260 0.740 30 H 0.084 0.916 31 H 0.049 0.951 32 H 0.139 0.861 33 H 0.138 0.862 34 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.154 -9.915 -14.459 19.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.069 4.069 3 N -0.250 5.250 4 C 0.069 3.931 5 C -0.539 4.539 6 H 0.091 0.909 7 C -0.148 4.148 8 N -0.540 5.540 9 Si 0.722 3.278 10 H -0.203 1.203 11 H -0.215 1.215 12 H -0.202 1.202 13 C -0.049 4.049 14 C -0.073 4.073 15 C 0.105 3.895 16 F -0.102 7.102 17 C -0.163 4.163 18 C -0.114 4.114 19 C -0.126 4.126 20 C -0.147 4.147 21 Br 0.054 6.946 22 H 0.070 0.930 23 H 0.048 0.952 24 H 0.107 0.893 25 H 0.072 0.928 26 H 0.045 0.955 27 H 0.014 0.986 28 H 0.044 0.956 29 H 0.070 0.930 30 H 0.103 0.897 31 H 0.067 0.933 32 H 0.157 0.843 33 H 0.155 0.845 34 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 8.916 -10.001 -14.052 19.415 hybrid contribution -0.574 0.392 0.523 0.870 sum 8.342 -9.609 -13.528 18.572 Atomic orbital electron populations 1.22080 0.95330 0.98517 1.04647 1.22293 0.96558 0.89336 0.98756 1.62283 1.11283 1.16334 1.35133 1.19786 0.97623 0.93414 0.82258 1.21326 0.93429 1.38869 1.00315 0.90884 1.24992 0.97763 0.96088 0.95955 1.69957 1.34613 1.43952 1.05526 0.86615 0.85359 0.78742 0.77042 1.20253 1.21465 1.20224 1.21127 0.93184 1.01693 0.88908 1.19969 0.98545 0.91331 0.97446 1.17355 1.00775 0.78730 0.92679 1.91552 1.91882 1.32481 1.94278 1.21260 1.02438 0.97555 0.94999 1.20899 0.99369 0.91832 0.99347 1.21085 1.00455 1.00542 0.90508 1.21648 1.06655 0.92784 0.93566 1.96696 1.96914 1.53525 1.47490 0.92991 0.95161 0.89298 0.92819 0.95509 0.98577 0.95607 0.93004 0.89733 0.93338 0.84333 0.84460 0.84668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.04 8.51 37.16 0.32 -2.72 16 2 C 0.06 1.19 4.16 -3.83 -0.02 1.17 16 3 N -0.53 -11.60 4.48 -237.52 -1.06 -12.66 16 4 C 0.19 5.08 4.75 -4.98 -0.02 5.05 16 5 C -0.50 -13.93 6.97 -34.44 -0.24 -14.17 16 6 H 0.07 2.00 5.65 -52.49 -0.30 1.71 16 7 C 0.05 1.50 5.46 -17.82 -0.10 1.40 16 8 N -0.90 -26.84 13.29 55.43 0.74 -26.10 16 9 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 12 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 13 C 0.08 1.50 4.71 -4.97 -0.02 1.47 16 14 C -0.07 -1.13 4.93 -104.53 -0.52 -1.64 16 15 C 0.13 1.92 7.24 -39.42 -0.29 1.63 16 16 F -0.12 -2.12 16.48 2.25 0.04 -2.09 16 17 C -0.14 -1.66 10.03 -39.51 -0.40 -2.06 16 18 C -0.10 -0.94 10.04 -39.60 -0.40 -1.34 16 19 C -0.11 -1.18 9.79 -39.55 -0.39 -1.56 16 20 C -0.07 -0.93 5.15 -39.53 -0.20 -1.14 16 21 Br -0.03 -0.45 28.27 -68.01 -1.92 -2.37 16 22 H 0.05 1.08 7.76 -51.93 -0.40 0.68 16 23 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 24 H 0.09 2.06 5.67 -51.93 -0.29 1.77 16 25 H 0.05 0.97 4.10 -51.93 -0.21 0.76 16 26 H 0.03 0.56 7.44 -51.93 -0.39 0.17 16 27 H 0.00 -0.10 7.81 -51.93 -0.41 -0.51 16 28 H 0.03 0.72 7.75 -51.93 -0.40 0.32 16 29 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 30 H 0.08 1.64 7.33 -51.93 -0.38 1.26 16 31 H 0.05 0.90 6.61 -51.93 -0.34 0.55 16 32 H 0.14 1.27 8.06 -52.48 -0.42 0.85 16 33 H 0.14 0.89 8.06 -52.49 -0.42 0.46 16 34 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16 LS Contribution 295.86 15.07 4.46 4.46 Total: -1.00 -30.04 295.86 -9.00 -39.04 By element: Atomic # 1 Polarization: 0.80 SS G_CDS: -3.95 Total: -3.15 kcal Atomic # 6 Polarization: -11.63 SS G_CDS: -2.27 Total: -13.90 kcal Atomic # 7 Polarization: -38.44 SS G_CDS: -0.33 Total: -38.76 kcal Atomic # 9 Polarization: -2.12 SS G_CDS: 0.04 Total: -2.09 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Atomic # 35 Polarization: -0.45 SS G_CDS: -1.92 Total: -2.37 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -30.04 -9.00 -39.04 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093178329.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.950 kcal (2) G-P(sol) polarization free energy of solvation -30.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds